Wall clock time and date at job start Tue Mar 31 2020 18:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00057 * 2 1 4 4 H 1.48494 * 109.47062 * 269.99996 * 3 2 1 5 5 H 1.48499 * 109.47335 * 30.00156 * 3 2 1 6 6 H 1.48510 * 109.46916 * 149.99944 * 3 2 1 7 7 C 1.38818 * 119.99997 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99684 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99799 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00018 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47367 * 179.97438 * 10 9 7 12 12 H 1.08995 * 109.49834 * 304.94195 * 11 10 9 13 13 C 1.53039 * 109.52680 * 184.85317 * 11 10 9 14 14 C 1.53041 * 109.53942 * 178.66886 * 13 11 10 15 15 C 1.52764 * 109.38189 * 61.24151 * 14 13 11 16 16 N 1.46925 * 109.00692 * 305.58675 * 15 14 13 17 17 C 1.34769 * 120.63088 * 233.58148 * 16 15 14 18 18 O 1.21700 * 120.00343 * 183.29950 * 17 16 15 19 19 C 1.46583 * 120.00042 * 3.29900 * 17 16 15 20 20 C 1.35869 * 125.41728 * 135.07413 * 19 17 16 21 21 C 1.39171 * 114.00150 * 180.02562 * 20 19 17 22 22 C 1.34371 * 113.99710 * 0.02562 * 21 20 19 23 23 S 1.71473 * 111.07686 * 359.97438 * 22 21 20 24 24 C 1.52372 * 110.38405 * 179.76868 * 22 21 20 25 25 C 1.54028 * 104.97360 * 342.75351 * 24 22 21 26 26 C 1.52821 * 136.18887 * 180.02562 * 21 20 19 27 27 C 1.46926 * 118.73703 * 53.31365 * 16 15 14 28 28 H 0.96998 * 119.99586 * 359.97438 * 1 2 3 29 29 H 0.97005 * 120.00309 * 359.97438 * 9 7 2 30 30 H 1.09005 * 109.46939 * 59.99996 * 10 9 7 31 31 H 1.09002 * 109.47073 * 300.00198 * 10 9 7 32 32 H 1.09000 * 109.45847 * 298.69183 * 13 11 10 33 33 H 1.09007 * 109.45785 * 58.66487 * 13 11 10 34 34 H 1.09000 * 109.49828 * 181.32100 * 14 13 11 35 35 H 1.08997 * 109.49750 * 301.38439 * 14 13 11 36 36 H 1.09002 * 109.50579 * 185.70851 * 15 14 13 37 37 H 1.08998 * 109.42988 * 65.42635 * 15 14 13 38 38 H 1.08007 * 123.00169 * 359.97438 * 20 19 17 39 39 H 1.08998 * 110.35912 * 101.32487 * 24 22 21 40 40 H 1.08998 * 110.34876 * 223.61290 * 24 22 21 41 41 H 1.08996 * 110.79388 * 268.38421 * 25 24 22 42 42 H 1.09001 * 111.10180 * 144.68695 * 25 24 22 43 43 H 1.09002 * 110.32848 * 316.50241 * 26 21 20 44 44 H 1.08998 * 110.33358 * 78.63384 * 26 21 20 45 45 H 1.09004 * 109.59050 * 66.42993 * 27 16 15 46 46 H 1.08996 * 109.58249 * 186.70834 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5479 1.4401 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0638 -4.8197 0.0012 12 1 0.3804 -4.7137 0.8437 13 6 1.8238 -6.1424 0.1232 14 6 0.8278 -7.3038 0.1573 15 6 0.0277 -7.3238 -1.1439 16 7 -0.5886 -6.0056 -1.3470 17 6 -1.9146 -5.8930 -1.5601 18 8 -2.4041 -4.8021 -1.7866 19 6 -2.7673 -7.0846 -1.5191 20 6 -3.9667 -7.1733 -0.8869 21 6 -4.5755 -8.4196 -1.0001 22 6 -3.8673 -9.3110 -1.7138 23 16 -2.4010 -8.6239 -2.2779 24 6 -4.6041 -10.6431 -1.7804 25 6 -5.6459 -10.5786 -0.6477 26 6 -5.8744 -9.0607 -0.5130 27 6 0.2672 -4.8120 -1.3073 28 1 -0.4849 0.8401 0.0004 29 1 0.3555 -2.3881 0.0005 30 1 2.6847 -3.7145 0.8906 31 1 2.6847 -3.7145 -0.8894 32 1 2.4889 -6.2593 -0.7324 33 1 2.4107 -6.1406 1.0418 34 1 1.3686 -8.2438 0.2678 35 1 0.1470 -7.1747 0.9987 36 1 -0.7500 -8.0850 -1.0813 37 1 0.6947 -7.5476 -1.9764 38 1 -4.4078 -6.3502 -0.3441 39 1 -5.1040 -10.7523 -2.7428 40 1 -3.9109 -11.4681 -1.6165 41 1 -5.2409 -10.9948 0.2747 42 1 -6.5666 -11.0882 -0.9320 43 1 -6.0598 -8.7967 0.5282 44 1 -6.7100 -8.7452 -1.1377 45 1 0.9542 -4.8267 -2.1535 46 1 -0.3523 -3.9165 -1.3552 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731528964.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:42 Heat of formation + Delta-G solvation = -13.557103 kcal Electronic energy + Delta-G solvation = -26289.606241 eV Core-core repulsion = 22690.743409 eV Total energy + Delta-G solvation = -3598.862832 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.46116 -40.29777 -38.89001 -36.67319 -35.45010 -34.46326 -33.15818 -31.63489 -29.62527 -29.22657 -27.26892 -26.65679 -24.96035 -24.22356 -22.81586 -22.52790 -21.39393 -20.42942 -19.31854 -19.27028 -18.90817 -17.43588 -17.18116 -16.72973 -16.52393 -16.34966 -15.86236 -15.50823 -15.46011 -15.29044 -15.07929 -14.31446 -14.26614 -14.15097 -13.79947 -13.75405 -13.71737 -13.33767 -13.06242 -13.01781 -12.86094 -12.74480 -12.66639 -12.19996 -12.18684 -12.04495 -12.00669 -11.94895 -11.81742 -11.67832 -11.57836 -11.36618 -11.11730 -10.97240 -9.86715 -9.60028 -9.20835 -9.03002 -7.95804 -5.26640 -0.45905 0.21506 0.85818 1.30483 1.43987 1.47465 1.55851 1.66255 2.01644 2.54373 3.28844 3.37114 3.57568 3.62904 3.72464 3.83640 3.85841 4.03069 4.15246 4.17718 4.19979 4.24146 4.34537 4.38892 4.53146 4.65152 4.71381 4.74354 4.80930 4.81604 4.82784 4.87828 4.92536 4.97128 5.01983 5.08130 5.17339 5.18803 5.24573 5.30907 5.36902 5.38517 5.39942 5.44970 5.48976 6.21913 6.24609 6.92399 7.29798 8.06301 8.28296 9.27855 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.020630 B = 0.002592 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.890777 B =10800.761208 C =11656.790194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.083 4.083 3 Si 0.979 3.021 4 H -0.287 1.287 5 H -0.297 1.297 6 H -0.264 1.264 7 C -0.245 4.245 8 H 0.082 0.918 9 N -0.750 5.750 10 C 0.159 3.841 11 C -0.095 4.095 12 H 0.049 0.951 13 C -0.105 4.105 14 C -0.125 4.125 15 C 0.086 3.914 16 N -0.599 5.599 17 C 0.579 3.421 18 O -0.581 6.581 19 C -0.291 4.291 20 C -0.058 4.058 21 C -0.154 4.154 22 C -0.230 4.230 23 S 0.281 5.719 24 C -0.043 4.043 25 C -0.110 4.110 26 C -0.061 4.061 27 C 0.128 3.872 28 H 0.250 0.750 29 H 0.369 0.631 30 H 0.030 0.970 31 H 0.030 0.970 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.117 0.883 35 H 0.055 0.945 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.129 0.871 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.081 0.919 42 H 0.104 0.896 43 H 0.077 0.923 44 H 0.084 0.916 45 H 0.078 0.922 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.100 -32.456 -2.699 33.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.274 4.274 3 Si 0.807 3.193 4 H -0.214 1.214 5 H -0.224 1.224 6 H -0.189 1.189 7 C -0.377 4.377 8 H 0.099 0.901 9 N -0.393 5.393 10 C 0.032 3.968 11 C -0.114 4.114 12 H 0.068 0.932 13 C -0.143 4.143 14 C -0.163 4.163 15 C -0.036 4.036 16 N -0.330 5.330 17 C 0.367 3.633 18 O -0.463 6.463 19 C -0.410 4.410 20 C -0.092 4.092 21 C -0.166 4.166 22 C -0.349 4.349 23 S 0.551 5.449 24 C -0.082 4.082 25 C -0.149 4.149 26 C -0.100 4.100 27 C 0.006 3.994 28 H 0.058 0.942 29 H 0.201 0.799 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.136 0.864 35 H 0.074 0.926 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.147 0.853 39 H 0.115 0.885 40 H 0.115 0.885 41 H 0.100 0.900 42 H 0.122 0.878 43 H 0.095 0.905 44 H 0.102 0.898 45 H 0.096 0.904 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.917 -32.347 -3.709 32.928 hybrid contribution -1.449 2.688 0.927 3.191 sum -6.366 -29.659 -2.781 30.462 Atomic orbital electron populations 1.69881 1.06974 1.26039 1.59573 1.25706 0.96366 1.01593 1.03765 0.85060 0.77715 0.79037 0.77460 1.21369 1.22363 1.18858 1.19693 0.91639 0.85245 1.41077 0.90061 1.42705 1.05529 1.01578 1.89440 1.20849 0.93509 0.84026 0.98420 1.21556 0.97054 0.96667 0.96150 0.93201 1.21522 0.97640 0.91261 1.03888 1.21821 0.97953 1.00267 0.96221 1.22418 0.98570 0.82524 1.00117 1.48130 1.05983 1.09369 1.69512 1.17566 0.82150 0.87313 0.76309 1.90864 1.74635 1.29700 1.51055 1.23959 1.02255 1.00163 1.14635 1.20261 0.92380 0.98033 0.98496 1.20567 1.00536 0.92053 1.03446 1.26388 1.00515 1.04189 1.03817 1.82538 1.14374 0.97956 1.49983 1.21034 0.96337 0.89827 1.01016 1.22296 0.99713 0.94202 0.98692 1.21135 0.91922 0.95181 1.01726 1.21487 0.92720 0.86896 0.98327 0.94152 0.79903 0.95203 0.95203 0.89811 0.90121 0.86439 0.92645 0.88407 0.88357 0.85283 0.88535 0.88526 0.90000 0.87771 0.90450 0.89759 0.90373 0.93058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -64.37 13.06 21.65 0.28 -64.08 16 2 C -0.08 -5.03 5.50 84.86 0.47 -4.56 16 3 Si 0.98 48.42 29.55 68.60 2.03 50.45 16 4 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 5 H -0.30 -14.81 7.11 99.48 0.71 -14.10 16 6 H -0.26 -12.12 7.11 99.48 0.71 -11.41 16 7 C -0.24 -14.38 9.99 84.04 0.84 -13.54 16 8 H 0.08 4.48 7.83 -2.91 -0.02 4.46 16 9 N -0.75 -40.87 5.38 -343.45 -1.85 -42.71 16 10 C 0.16 6.50 5.66 86.38 0.49 6.99 16 11 C -0.09 -3.20 2.37 -10.72 -0.03 -3.23 16 12 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 13 C -0.11 -2.34 5.17 30.62 0.16 -2.18 16 14 C -0.12 -2.22 6.06 30.53 0.19 -2.04 16 15 C 0.09 1.72 5.85 86.22 0.50 2.22 16 16 N -0.60 -18.72 2.98 -824.55 -2.46 -21.18 16 17 C 0.58 21.25 7.53 86.42 0.65 21.91 16 18 O -0.58 -28.02 16.51 -4.35 -0.07 -28.09 16 19 C -0.29 -8.26 5.45 23.90 0.13 -8.13 16 20 C -0.06 -1.58 10.21 21.94 0.22 -1.36 16 21 C -0.15 -3.12 6.49 -19.84 -0.13 -3.25 16 22 C -0.23 -3.82 7.10 25.34 0.18 -3.64 16 23 S 0.28 5.11 19.88 -56.49 -1.12 3.98 16 24 C -0.04 -0.38 6.80 30.73 0.21 -0.18 16 25 C -0.11 -0.83 7.10 31.31 0.22 -0.61 16 26 C -0.06 -0.81 6.81 30.91 0.21 -0.59 16 27 C 0.13 4.71 5.51 86.36 0.48 5.19 16 28 H 0.25 15.99 8.31 -92.71 -0.77 15.22 16 29 H 0.37 22.22 6.89 -92.70 -0.64 21.58 16 30 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 31 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 34 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.10 1.72 4.00 -16.27 -0.07 1.66 16 37 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.13 3.80 8.06 -2.91 -0.02 3.78 16 39 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 43 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 46 H 0.05 2.46 6.23 -2.39 -0.01 2.44 16 Total: -1.00 -82.14 375.74 1.90 -80.25 By element: Atomic # 1 Polarization: 28.08 SS G_CDS: 0.29 Total: 28.38 kcal Atomic # 6 Polarization: -11.78 SS G_CDS: 4.79 Total: -6.99 kcal Atomic # 7 Polarization: -123.96 SS G_CDS: -4.02 Total: -127.98 kcal Atomic # 8 Polarization: -28.02 SS G_CDS: -0.07 Total: -28.09 kcal Atomic # 14 Polarization: 48.42 SS G_CDS: 2.03 Total: 50.45 kcal Atomic # 16 Polarization: 5.11 SS G_CDS: -1.12 Total: 3.98 kcal Total: -82.14 1.90 -80.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731528964.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.690 kcal (2) G-P(sol) polarization free energy of solvation -82.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds