Wall clock time and date at job start Tue Mar 31 2020 18:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 119.99669 * 2 1 4 4 H 1.48502 * 109.46881 * 269.99916 * 3 2 1 5 5 H 1.48499 * 109.47149 * 29.99553 * 3 2 1 6 6 H 1.48496 * 109.47418 * 149.99816 * 3 2 1 7 7 C 1.38813 * 120.00732 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00190 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99548 * 0.02562 * 7 2 1 10 10 C 1.47426 * 125.65098 * 0.03593 * 9 7 2 11 11 C 1.54909 * 104.83381 * 204.09440 * 10 9 7 12 12 C 1.55157 * 101.57958 * 322.98989 * 11 10 9 13 13 H 1.09002 * 110.72213 * 277.13898 * 12 11 10 14 14 C 1.53001 * 110.87088 * 153.93501 * 12 11 10 15 15 C 1.52996 * 109.47434 * 177.54647 * 14 12 11 16 16 N 1.46497 * 109.47458 * 179.97438 * 15 14 12 17 17 C 1.34777 * 120.00116 * 179.97438 * 16 15 14 18 18 O 1.21700 * 120.00066 * 0.02562 * 17 16 15 19 19 C 1.46580 * 119.99771 * 180.02562 * 17 16 15 20 20 C 1.35872 * 125.41633 * 179.72240 * 19 17 16 21 21 C 1.39171 * 113.99951 * 179.80222 * 20 19 17 22 22 C 1.34356 * 114.00039 * 0.47134 * 21 20 19 23 23 S 1.71486 * 111.07683 * 359.75743 * 22 21 20 24 24 C 1.52373 * 110.39053 * 179.77049 * 22 21 20 25 25 C 1.54166 * 104.89706 * 17.55862 * 24 22 21 26 26 C 1.52827 * 136.18603 * 180.11152 * 21 20 19 27 27 C 1.47018 * 125.64797 * 179.97438 * 9 7 2 28 28 H 0.96996 * 120.00556 * 0.02562 * 1 2 3 29 29 H 1.08998 * 110.36876 * 322.93757 * 10 9 7 30 30 H 1.09009 * 110.36320 * 85.14431 * 10 9 7 31 31 H 1.09000 * 111.00466 * 204.91585 * 11 10 9 32 32 H 1.08997 * 111.00194 * 81.06198 * 11 10 9 33 33 H 1.08999 * 109.47061 * 297.54951 * 14 12 11 34 34 H 1.09006 * 109.46767 * 57.54604 * 14 12 11 35 35 H 1.08999 * 109.47244 * 300.00191 * 15 14 12 36 36 H 1.09005 * 109.46729 * 59.99925 * 15 14 12 37 37 H 0.96998 * 119.99716 * 0.02562 * 16 15 14 38 38 H 1.08008 * 123.00058 * 0.02562 * 20 19 17 39 39 H 1.09005 * 110.35276 * 136.41313 * 24 22 21 40 40 H 1.08994 * 110.35679 * 258.70326 * 24 22 21 41 41 H 1.09000 * 110.95779 * 91.40596 * 25 24 22 42 42 H 1.08991 * 110.95799 * 215.10479 * 25 24 22 43 43 H 1.08998 * 110.32924 * 43.82542 * 26 21 20 44 44 H 1.08998 * 110.41396 * 281.64554 * 26 21 20 45 45 H 1.08998 * 109.88222 * 59.56024 * 27 9 7 46 46 H 1.09005 * 110.01447 * 298.46604 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4474 2.6527 0.6999 6 1 3.5476 1.4404 0.7000 7 6 2.0104 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 -0.1413 -2.5333 -0.0007 11 6 -0.4019 -3.9323 0.6111 12 6 0.7787 -4.7524 0.0271 13 1 0.5471 -5.0981 -0.9803 14 6 1.1246 -5.9333 0.9365 15 6 2.2493 -6.7536 0.3017 16 7 2.5809 -7.8839 1.1726 17 6 3.5497 -8.7494 0.8140 18 8 4.1494 -8.5918 -0.2332 19 6 3.8810 -9.8807 1.6852 20 6 4.8300 -10.8192 1.4305 21 6 4.9495 -11.7872 2.4232 22 6 4.0982 -11.6252 3.4499 23 16 3.1101 -10.2427 3.2194 24 6 4.2951 -12.7286 4.4821 25 6 5.6793 -13.3275 4.1628 26 6 5.8141 -13.0255 2.6576 27 6 1.9320 -3.7274 0.0005 28 1 -0.4851 0.8400 -0.0004 29 1 -0.5998 -1.7589 0.6142 30 1 -0.5264 -2.4851 -1.0194 31 1 -1.3589 -4.3329 0.2768 32 1 -0.3532 -3.8980 1.6994 33 1 1.4502 -5.5608 1.9077 34 1 0.2440 -6.5627 1.0653 35 1 1.9237 -7.1261 -0.6696 36 1 3.1298 -6.1241 0.1728 37 1 2.1026 -8.0098 2.0070 38 1 5.4397 -10.8124 0.5390 39 1 4.2855 -12.3117 5.4892 40 1 3.5203 -13.4880 4.3778 41 1 6.4618 -12.8265 4.7327 42 1 5.6916 -14.4015 4.3482 43 1 6.8533 -12.8151 2.4050 44 1 5.4442 -13.8645 2.0684 45 1 2.5580 -3.8509 0.8843 46 1 2.5306 -3.8659 -0.8999 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732058773.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:12 Heat of formation + Delta-G solvation = 12.147588 kcal Electronic energy + Delta-G solvation = -25064.003091 eV Core-core repulsion = 21466.254898 eV Total energy + Delta-G solvation = -3597.748193 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.14721 -39.40022 -37.79647 -35.32790 -34.67908 -33.04697 -30.96078 -29.24175 -28.93358 -28.39723 -26.53304 -24.88428 -23.69149 -22.36426 -21.95360 -20.68295 -20.07913 -19.43604 -18.89321 -18.14222 -16.87929 -16.47447 -16.14999 -15.82628 -15.72604 -15.00077 -14.84962 -14.57629 -14.08646 -13.76870 -13.61047 -13.38435 -13.05213 -12.78188 -12.51472 -12.38763 -12.26686 -12.17019 -11.91341 -11.69703 -11.67893 -11.56446 -11.30550 -11.25410 -11.06090 -10.88035 -10.74651 -10.31211 -10.12816 -9.97934 -9.88408 -9.72821 -9.43997 -9.24356 -8.95517 -8.68966 -8.61054 -6.78131 -5.61334 -3.02535 0.21915 0.99687 1.57245 1.99838 2.95689 3.03154 3.42602 3.47449 3.49398 4.00783 4.05094 4.48646 4.52270 4.53297 4.76419 4.94150 4.98891 5.03265 5.10505 5.18052 5.26880 5.29930 5.39137 5.44447 5.51121 5.57449 5.61424 5.65105 5.66237 5.79681 5.88852 5.91822 6.01158 6.03280 6.16222 6.23477 6.35018 6.41664 6.63562 6.66825 6.80416 7.01139 7.28973 7.56642 7.67651 7.89850 7.99877 8.40940 9.26783 9.87905 10.53353 11.42579 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.025991 B = 0.001838 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.046485 B =15230.696651 C =15458.090409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.014 4.014 3 Si 0.914 3.086 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.220 4.220 8 H 0.077 0.923 9 N -0.605 5.605 10 C 0.151 3.849 11 C -0.138 4.138 12 C -0.097 4.097 13 H 0.073 0.927 14 C -0.117 4.117 15 C 0.118 3.882 16 N -0.724 5.724 17 C 0.589 3.411 18 O -0.528 6.528 19 C -0.263 4.263 20 C -0.038 4.038 21 C -0.138 4.138 22 C -0.222 4.222 23 S 0.217 5.783 24 C -0.045 4.045 25 C -0.119 4.119 26 C -0.058 4.058 27 C 0.139 3.861 28 H 0.251 0.749 29 H 0.105 0.895 30 H 0.011 0.989 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.396 0.604 38 H 0.151 0.849 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.076 0.924 42 H 0.082 0.918 43 H 0.076 0.924 44 H 0.080 0.920 45 H 0.022 0.978 46 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.722 -29.281 10.179 31.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.209 4.209 3 Si 0.745 3.255 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.349 4.349 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.026 3.974 11 C -0.177 4.177 12 C -0.117 4.117 13 H 0.091 0.909 14 C -0.155 4.155 15 C -0.005 4.005 16 N -0.375 5.375 17 C 0.375 3.625 18 O -0.406 6.406 19 C -0.383 4.383 20 C -0.071 4.071 21 C -0.151 4.151 22 C -0.341 4.341 23 S 0.487 5.513 24 C -0.084 4.084 25 C -0.157 4.157 26 C -0.097 4.097 27 C 0.013 3.987 28 H 0.062 0.938 29 H 0.123 0.877 30 H 0.029 0.971 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.230 0.770 38 H 0.169 0.831 39 H 0.096 0.904 40 H 0.103 0.897 41 H 0.095 0.905 42 H 0.101 0.899 43 H 0.095 0.905 44 H 0.099 0.901 45 H 0.040 0.960 46 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 4.918 -28.175 10.255 30.384 hybrid contribution 1.355 0.124 -0.568 1.475 sum 6.273 -28.051 9.687 30.333 Atomic orbital electron populations 1.69800 1.04867 1.24663 1.57899 1.24787 0.95740 0.97701 1.02646 0.86073 0.78518 0.83376 0.77558 1.21671 1.21683 1.20723 1.19097 0.90519 0.82558 1.42685 0.90548 1.44518 1.02008 0.99805 1.86782 1.21925 0.84699 0.92646 0.98139 1.23035 0.95842 0.98836 0.99973 1.22091 0.97573 0.93691 0.98332 0.90907 1.21802 0.97085 0.96771 0.99868 1.21574 0.99171 0.86303 0.93406 1.45945 1.38058 1.28399 1.25065 1.16878 0.79893 0.80840 0.84897 1.90851 1.51705 1.74121 1.23879 1.24268 1.07644 1.04320 1.02032 1.20227 0.96311 0.91322 0.99242 1.20394 1.00935 0.99160 0.94628 1.25665 1.02633 1.02535 1.03308 1.82792 1.35133 1.18755 1.14607 1.20886 0.98139 0.93301 0.96051 1.22294 0.96422 1.01328 0.95687 1.21004 0.98891 0.93410 0.96379 1.21366 0.93671 0.85924 0.97711 0.93810 0.87690 0.97136 0.92477 0.92188 0.91086 0.91550 0.91118 0.90582 0.76963 0.83118 0.90391 0.89710 0.90536 0.89944 0.90525 0.90143 0.95984 0.96247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.32 10.09 55.49 0.56 -26.76 16 2 C -0.01 -0.39 5.49 -17.43 -0.10 -0.49 16 3 Si 0.91 22.49 29.55 -169.99 -5.02 17.46 16 4 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.22 -6.29 10.27 -15.06 -0.15 -6.45 16 8 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 9 N -0.61 -15.87 3.39 -170.07 -0.58 -16.45 16 10 C 0.15 3.71 5.89 -2.53 -0.01 3.69 16 11 C -0.14 -2.57 6.54 -24.58 -0.16 -2.73 16 12 C -0.10 -1.65 2.95 -88.79 -0.26 -1.91 16 13 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 14 C -0.12 -1.53 4.73 -26.73 -0.13 -1.65 16 15 C 0.12 1.57 5.54 -4.05 -0.02 1.54 16 16 N -0.72 -8.61 5.55 -61.65 -0.34 -8.95 16 17 C 0.59 8.08 7.78 -12.90 -0.10 7.98 16 18 O -0.53 -9.16 16.83 5.19 0.09 -9.08 16 19 C -0.26 -2.96 6.41 -37.07 -0.24 -3.20 16 20 C -0.04 -0.40 9.99 -40.08 -0.40 -0.80 16 21 C -0.14 -1.21 6.49 -104.58 -0.68 -1.89 16 22 C -0.22 -1.80 7.10 -34.85 -0.25 -2.05 16 23 S 0.22 1.82 22.15 -107.50 -2.38 -0.56 16 24 C -0.04 -0.24 6.81 -26.44 -0.18 -0.42 16 25 C -0.12 -0.52 7.11 -25.54 -0.18 -0.70 16 26 C -0.06 -0.34 6.81 -26.24 -0.18 -0.52 16 27 C 0.14 2.95 6.10 -3.07 -0.02 2.93 16 28 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 29 H 0.11 2.89 5.87 -51.93 -0.30 2.59 16 30 H 0.01 0.28 8.14 -51.92 -0.42 -0.14 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.06 1.09 8.05 -51.93 -0.42 0.67 16 33 H 0.07 0.93 8.00 -51.93 -0.42 0.52 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.08 1.14 7.58 -51.93 -0.39 0.75 16 37 H 0.40 3.71 7.58 -40.82 -0.31 3.40 16 38 H 0.15 1.58 8.05 -52.48 -0.42 1.16 16 39 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 42 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 43 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.02 0.47 7.73 -51.93 -0.40 0.06 16 46 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 381.60 15.07 5.75 5.75 Total: -1.00 -33.53 381.60 -12.27 -45.80 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -7.28 Total: -0.55 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -3.06 Total: -6.67 kcal Atomic # 7 Polarization: -51.80 SS G_CDS: -0.36 Total: -52.16 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: 0.09 Total: -9.08 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.46 kcal Atomic # 16 Polarization: 1.82 SS G_CDS: -2.38 Total: -0.56 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.53 -12.27 -45.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732058773.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.946 kcal (2) G-P(sol) polarization free energy of solvation -33.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds