Wall clock time and date at job start Tue Mar 31 2020 18:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 119.99669 * 2 1 4 4 H 1.48502 * 109.46881 * 269.99916 * 3 2 1 5 5 H 1.48499 * 109.47149 * 29.99553 * 3 2 1 6 6 H 1.48496 * 109.47418 * 149.99816 * 3 2 1 7 7 C 1.38813 * 120.00732 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00190 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99548 * 0.02562 * 7 2 1 10 10 C 1.47426 * 125.65098 * 0.03593 * 9 7 2 11 11 C 1.54909 * 104.83381 * 204.09440 * 10 9 7 12 12 C 1.55157 * 101.57958 * 322.98989 * 11 10 9 13 13 H 1.09002 * 110.72213 * 277.13898 * 12 11 10 14 14 C 1.53001 * 110.87088 * 153.93501 * 12 11 10 15 15 C 1.52996 * 109.47434 * 177.54647 * 14 12 11 16 16 N 1.46497 * 109.47458 * 179.97438 * 15 14 12 17 17 C 1.34777 * 120.00116 * 179.97438 * 16 15 14 18 18 O 1.21700 * 120.00066 * 0.02562 * 17 16 15 19 19 C 1.46580 * 119.99771 * 180.02562 * 17 16 15 20 20 C 1.35872 * 125.41633 * 179.72240 * 19 17 16 21 21 C 1.39171 * 113.99951 * 179.80222 * 20 19 17 22 22 C 1.34356 * 114.00039 * 0.47134 * 21 20 19 23 23 S 1.71486 * 111.07683 * 359.75743 * 22 21 20 24 24 C 1.52373 * 110.39053 * 179.77049 * 22 21 20 25 25 C 1.54166 * 104.89706 * 17.55862 * 24 22 21 26 26 C 1.52827 * 136.18603 * 180.11152 * 21 20 19 27 27 C 1.47018 * 125.64797 * 179.97438 * 9 7 2 28 28 H 0.96996 * 120.00556 * 0.02562 * 1 2 3 29 29 H 1.08998 * 110.36876 * 322.93757 * 10 9 7 30 30 H 1.09009 * 110.36320 * 85.14431 * 10 9 7 31 31 H 1.09000 * 111.00466 * 204.91585 * 11 10 9 32 32 H 1.08997 * 111.00194 * 81.06198 * 11 10 9 33 33 H 1.08999 * 109.47061 * 297.54951 * 14 12 11 34 34 H 1.09006 * 109.46767 * 57.54604 * 14 12 11 35 35 H 1.08999 * 109.47244 * 300.00191 * 15 14 12 36 36 H 1.09005 * 109.46729 * 59.99925 * 15 14 12 37 37 H 0.96998 * 119.99716 * 0.02562 * 16 15 14 38 38 H 1.08008 * 123.00058 * 0.02562 * 20 19 17 39 39 H 1.09005 * 110.35276 * 136.41313 * 24 22 21 40 40 H 1.08994 * 110.35679 * 258.70326 * 24 22 21 41 41 H 1.09000 * 110.95779 * 91.40596 * 25 24 22 42 42 H 1.08991 * 110.95799 * 215.10479 * 25 24 22 43 43 H 1.08998 * 110.32924 * 43.82542 * 26 21 20 44 44 H 1.08998 * 110.41396 * 281.64554 * 26 21 20 45 45 H 1.08998 * 109.88222 * 59.56024 * 27 9 7 46 46 H 1.09005 * 110.01447 * 298.46604 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4474 2.6527 0.6999 6 1 3.5476 1.4404 0.7000 7 6 2.0104 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 -0.1413 -2.5333 -0.0007 11 6 -0.4019 -3.9323 0.6111 12 6 0.7787 -4.7524 0.0271 13 1 0.5471 -5.0981 -0.9803 14 6 1.1246 -5.9333 0.9365 15 6 2.2493 -6.7536 0.3017 16 7 2.5809 -7.8839 1.1726 17 6 3.5497 -8.7494 0.8140 18 8 4.1494 -8.5918 -0.2332 19 6 3.8810 -9.8807 1.6852 20 6 4.8300 -10.8192 1.4305 21 6 4.9495 -11.7872 2.4232 22 6 4.0982 -11.6252 3.4499 23 16 3.1101 -10.2427 3.2194 24 6 4.2951 -12.7286 4.4821 25 6 5.6793 -13.3275 4.1628 26 6 5.8141 -13.0255 2.6576 27 6 1.9320 -3.7274 0.0005 28 1 -0.4851 0.8400 -0.0004 29 1 -0.5998 -1.7589 0.6142 30 1 -0.5264 -2.4851 -1.0194 31 1 -1.3589 -4.3329 0.2768 32 1 -0.3532 -3.8980 1.6994 33 1 1.4502 -5.5608 1.9077 34 1 0.2440 -6.5627 1.0653 35 1 1.9237 -7.1261 -0.6696 36 1 3.1298 -6.1241 0.1728 37 1 2.1026 -8.0098 2.0070 38 1 5.4397 -10.8124 0.5390 39 1 4.2855 -12.3117 5.4892 40 1 3.5203 -13.4880 4.3778 41 1 6.4618 -12.8265 4.7327 42 1 5.6916 -14.4015 4.3482 43 1 6.8533 -12.8151 2.4050 44 1 5.4442 -13.8645 2.0684 45 1 2.5580 -3.8509 0.8843 46 1 2.5306 -3.8659 -0.8999 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732058773.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:11 Heat of formation + Delta-G solvation = -7.694739 kcal Electronic energy + Delta-G solvation = -25064.863519 eV Core-core repulsion = 21466.254898 eV Total energy + Delta-G solvation = -3598.608621 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.03739 -40.16989 -39.39365 -36.58183 -35.35452 -34.80018 -32.59545 -30.84240 -29.59494 -29.22045 -27.98182 -26.59729 -24.75908 -23.44711 -22.67687 -21.92416 -21.56849 -20.72815 -19.68726 -18.98420 -18.85281 -17.29559 -17.15875 -16.84209 -16.72224 -16.47741 -16.23831 -15.64687 -15.45256 -15.03119 -14.92601 -14.27609 -13.88444 -13.78090 -13.72715 -13.53956 -13.39951 -13.27776 -13.13126 -12.97583 -12.84728 -12.70892 -12.69518 -12.27554 -12.05504 -12.00499 -11.94184 -11.78625 -11.71698 -11.61062 -11.45519 -11.30545 -11.14326 -10.74797 -10.30472 -9.66790 -9.32685 -8.88029 -7.78023 -5.22287 -0.54846 0.31055 0.87633 1.24749 1.44581 1.46703 1.55535 1.97774 2.06395 2.48747 3.30570 3.45285 3.56172 3.70628 3.73834 3.83336 3.91422 4.15417 4.15636 4.18543 4.29711 4.32482 4.36352 4.61370 4.63161 4.67667 4.73115 4.80804 4.82494 4.87592 4.90925 4.96863 5.00106 5.08898 5.15919 5.16725 5.23893 5.24364 5.29405 5.35582 5.37606 5.43231 5.50792 5.69341 5.83606 6.32255 6.33791 7.00471 7.11355 7.79280 8.43061 9.23539 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.025991 B = 0.001838 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.046485 B =15230.696651 C =15458.090409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.069 4.069 3 Si 0.980 3.020 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.271 1.271 7 C -0.241 4.241 8 H 0.076 0.924 9 N -0.629 5.629 10 C 0.148 3.852 11 C -0.121 4.121 12 C -0.083 4.083 13 H 0.080 0.920 14 C -0.101 4.101 15 C 0.123 3.877 16 N -0.712 5.712 17 C 0.587 3.413 18 O -0.576 6.576 19 C -0.297 4.297 20 C -0.045 4.045 21 C -0.158 4.158 22 C -0.220 4.220 23 S 0.259 5.741 24 C -0.046 4.046 25 C -0.113 4.113 26 C -0.060 4.060 27 C 0.133 3.867 28 H 0.247 0.753 29 H 0.072 0.928 30 H -0.017 1.017 31 H 0.087 0.913 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.100 0.900 35 H 0.068 0.932 36 H 0.053 0.947 37 H 0.411 0.589 38 H 0.140 0.860 39 H 0.091 0.909 40 H 0.100 0.900 41 H 0.078 0.922 42 H 0.104 0.896 43 H 0.078 0.922 44 H 0.089 0.911 45 H 0.025 0.975 46 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.593 -31.754 12.410 34.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.261 4.261 3 Si 0.809 3.191 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.195 1.195 7 C -0.370 4.370 8 H 0.094 0.906 9 N -0.355 5.355 10 C 0.024 3.976 11 C -0.159 4.159 12 C -0.103 4.103 13 H 0.098 0.902 14 C -0.139 4.139 15 C 0.000 4.000 16 N -0.363 5.363 17 C 0.375 3.625 18 O -0.458 6.458 19 C -0.417 4.417 20 C -0.079 4.079 21 C -0.170 4.170 22 C -0.340 4.340 23 S 0.529 5.471 24 C -0.085 4.085 25 C -0.151 4.151 26 C -0.098 4.098 27 C 0.008 3.992 28 H 0.057 0.943 29 H 0.090 0.910 30 H 0.001 0.999 31 H 0.105 0.895 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.118 0.882 35 H 0.086 0.914 36 H 0.071 0.929 37 H 0.248 0.752 38 H 0.158 0.842 39 H 0.109 0.891 40 H 0.118 0.882 41 H 0.096 0.904 42 H 0.123 0.877 43 H 0.096 0.904 44 H 0.107 0.893 45 H 0.043 0.957 46 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges 4.776 -30.676 12.523 33.477 hybrid contribution 1.419 0.843 -1.248 2.069 sum 6.195 -29.834 11.275 32.490 Atomic orbital electron populations 1.70056 1.06111 1.25006 1.58596 1.25643 0.96725 1.00967 1.02775 0.85048 0.77624 0.79064 0.77411 1.21504 1.21579 1.19550 1.19450 0.90910 0.84079 1.42581 0.90622 1.44861 1.02978 1.00944 1.86699 1.21774 0.83871 0.95601 0.96396 1.22874 0.97870 0.95043 1.00140 1.22000 0.94842 0.93702 0.99754 0.90190 1.21651 0.98174 0.95373 0.98709 1.21395 0.98395 0.86446 0.93772 1.45769 1.37659 1.27510 1.25344 1.17235 0.79419 0.81323 0.84565 1.90815 1.53431 1.75481 1.26065 1.24116 1.09438 1.04263 1.03894 1.20371 0.96088 0.91948 0.99541 1.20654 1.02115 0.99941 0.94275 1.26231 1.01489 1.02539 1.03698 1.82527 1.34098 1.18466 1.11961 1.21083 0.99112 0.92639 0.95707 1.22332 0.95879 1.02733 0.94203 1.21125 0.98514 0.92351 0.97858 1.21570 0.95284 0.85110 0.97247 0.94302 0.91011 0.99889 0.89456 0.91295 0.90597 0.88180 0.91383 0.92860 0.75248 0.84240 0.89098 0.88163 0.90354 0.87711 0.90350 0.89300 0.95668 0.97123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.67 10.09 21.65 0.22 -57.45 16 2 C -0.07 -4.02 5.49 84.86 0.47 -3.55 16 3 Si 0.98 46.95 29.55 68.60 2.03 48.98 16 4 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 5 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 6 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 7 C -0.24 -14.09 10.27 84.03 0.86 -13.23 16 8 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 9 N -0.63 -33.66 3.39 -691.98 -2.35 -36.01 16 10 C 0.15 7.45 5.89 86.85 0.51 7.96 16 11 C -0.12 -4.29 6.54 31.99 0.21 -4.08 16 12 C -0.08 -2.69 2.95 -9.61 -0.03 -2.72 16 13 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 14 C -0.10 -2.36 4.73 30.59 0.14 -2.21 16 15 C 0.12 3.15 5.54 86.38 0.48 3.63 16 16 N -0.71 -16.16 5.55 -467.19 -2.59 -18.75 16 17 C 0.59 16.26 7.78 86.42 0.67 16.94 16 18 O -0.58 -20.89 16.83 -4.35 -0.07 -20.96 16 19 C -0.30 -6.65 6.41 23.90 0.15 -6.50 16 20 C -0.05 -0.98 9.99 21.94 0.22 -0.76 16 21 C -0.16 -2.58 6.49 -19.84 -0.13 -2.71 16 22 C -0.22 -3.07 7.10 25.34 0.18 -2.89 16 23 S 0.26 3.82 22.15 -56.49 -1.25 2.57 16 24 C -0.05 -0.34 6.81 30.78 0.21 -0.13 16 25 C -0.11 -0.64 7.11 31.36 0.22 -0.42 16 26 C -0.06 -0.59 6.81 30.91 0.21 -0.38 16 27 C 0.13 5.66 6.10 86.73 0.53 6.19 16 28 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 29 H 0.07 4.09 5.87 -2.39 -0.01 4.07 16 30 H -0.02 -0.92 8.14 -2.38 -0.02 -0.94 16 31 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 32 H 0.07 2.34 8.05 -2.39 -0.02 2.32 16 33 H 0.08 1.76 8.00 -2.39 -0.02 1.74 16 34 H 0.10 1.77 8.14 -2.38 -0.02 1.75 16 35 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.05 1.62 7.58 -2.38 -0.02 1.60 16 37 H 0.41 6.80 7.58 -92.71 -0.70 6.09 16 38 H 0.14 3.16 8.05 -2.91 -0.02 3.14 16 39 H 0.09 0.47 8.14 -2.38 -0.02 0.45 16 40 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 41 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 42 H 0.10 0.17 8.14 -2.39 -0.02 0.15 16 43 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.03 1.06 7.73 -2.39 -0.02 1.04 16 46 H 0.01 0.47 8.14 -2.38 -0.02 0.45 16 Total: -1.00 -76.19 381.60 1.17 -75.02 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: 0.28 Total: 11.46 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: 4.91 Total: -4.85 kcal Atomic # 7 Polarization: -107.49 SS G_CDS: -4.72 Total: -112.21 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -0.07 Total: -20.96 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.98 kcal Atomic # 16 Polarization: 3.82 SS G_CDS: -1.25 Total: 2.57 kcal Total: -76.19 1.17 -75.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732058773.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.321 kcal (2) G-P(sol) polarization free energy of solvation -76.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds