Wall clock time and date at job start Tue Mar 31 2020 17:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 114.00329 * 2 1 4 4 C 1.53002 * 109.47282 * 179.97438 * 3 2 1 5 5 S 1.81395 * 109.46885 * 180.02562 * 4 3 2 6 6 O 1.42100 * 108.57913 * 65.51730 * 5 4 3 7 7 O 1.42095 * 108.58087 * 294.48703 * 5 4 3 8 8 C 1.81401 * 101.92119 * 180.02562 * 5 4 3 9 9 C 1.50695 * 109.47419 * 180.02562 * 8 5 4 10 10 O 1.21281 * 120.00176 * 0.02562 * 9 8 5 11 11 N 1.34776 * 120.00219 * 180.02562 * 9 8 5 12 12 C 1.46501 * 119.99687 * 0.02562 * 11 9 8 13 13 C 1.46501 * 120.00148 * 180.02562 * 11 9 8 14 14 H 1.08997 * 110.88772 * 350.51862 * 13 11 9 15 15 C 1.55159 * 111.00200 * 226.59868 * 13 11 9 16 16 C 1.54332 * 102.94088 * 277.42247 * 15 13 11 17 17 N 1.47015 * 107.27046 * 337.81224 * 16 15 13 18 18 C 1.36938 * 125.64960 * 178.96859 * 17 16 15 19 19 H 1.08003 * 120.00682 * 174.91674 * 18 17 16 20 20 C 1.38820 * 119.99661 * 354.92799 * 18 17 16 21 21 N 1.31618 * 120.00015 * 5.75512 * 20 18 17 22 22 Si 1.86800 * 119.99575 * 185.75373 * 20 18 17 23 23 H 1.48497 * 109.46783 * 94.99905 * 22 20 18 24 24 H 1.48511 * 109.46705 * 214.99303 * 22 20 18 25 25 H 1.48498 * 109.47415 * 334.99408 * 22 20 18 26 26 C 1.47428 * 108.70650 * 358.93702 * 17 16 15 27 27 H 1.09003 * 109.46613 * 59.99893 * 1 2 3 28 28 H 1.09001 * 109.47132 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.46850 * 299.99864 * 1 2 3 30 30 H 1.09005 * 109.46711 * 60.00282 * 3 2 1 31 31 H 1.08996 * 109.47352 * 300.00276 * 3 2 1 32 32 H 1.09005 * 109.46782 * 60.00614 * 4 3 2 33 33 H 1.08996 * 109.47388 * 300.00543 * 4 3 2 34 34 H 1.09006 * 109.46825 * 59.99750 * 8 5 4 35 35 H 1.09000 * 109.47392 * 300.00262 * 8 5 4 36 36 H 1.08999 * 109.47367 * 263.94014 * 12 11 9 37 37 H 1.08997 * 109.47279 * 23.94574 * 12 11 9 38 38 H 1.09010 * 109.47165 * 143.94466 * 12 11 9 39 39 H 1.09007 * 110.71659 * 159.06697 * 15 13 11 40 40 H 1.08994 * 110.72221 * 35.78885 * 15 13 11 41 41 H 1.08991 * 109.88259 * 218.39248 * 16 15 13 42 42 H 1.09001 * 109.87632 * 97.22762 * 16 15 13 43 43 H 0.96998 * 119.99488 * 179.97438 * 21 20 18 44 44 H 1.09005 * 110.36641 * 142.96807 * 26 17 16 45 45 H 1.08997 * 110.36504 * 265.28728 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1845 0.0006 5 16 4.2734 2.8417 0.0014 6 8 3.9470 3.4820 1.2273 7 8 3.9481 3.4827 -1.2243 8 6 6.0472 2.4621 0.0013 9 6 6.8358 3.7463 0.0025 10 8 6.2581 4.8126 0.0039 11 7 8.1830 3.7098 0.0022 12 6 8.8809 2.4217 0.0000 13 6 8.9496 4.9582 0.0039 14 1 8.2970 5.8153 -0.1623 15 6 10.0885 4.9130 -1.0489 16 6 11.2118 4.1547 -0.3105 17 7 10.9567 4.2921 1.1308 18 6 11.7152 3.7452 2.1312 19 1 11.4924 3.9717 3.1634 20 6 12.7709 2.8996 1.8186 21 7 13.1145 2.7128 0.5618 22 14 13.7038 2.0271 3.1816 23 1 13.1377 0.6683 3.3774 24 1 15.1371 1.9172 2.8086 25 1 13.5783 2.8021 4.4421 26 6 9.7496 5.1168 1.3209 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6887 1.8463 0.8901 31 1 1.6887 1.8464 -0.8899 32 1 3.8575 0.6435 -0.8892 33 1 3.8569 0.6437 0.8908 34 1 6.2950 1.8839 -0.8890 35 1 6.2950 1.8832 0.8910 36 1 9.1496 2.1523 1.0214 37 1 8.2281 1.6555 -0.4182 38 1 9.7844 2.4989 -0.6050 39 1 10.4114 5.9205 -1.3112 40 1 9.7719 4.3649 -1.9362 41 1 12.1791 4.5911 -0.5591 42 1 11.1946 3.1016 -0.5913 43 1 13.8524 2.1223 0.3435 44 1 9.1672 4.7479 2.1653 45 1 10.0236 6.1604 1.4751 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732161489.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:16 Heat of formation + Delta-G solvation = -99.890597 kcal Electronic energy + Delta-G solvation = -27699.145932 eV Core-core repulsion = 23653.397384 eV Total energy + Delta-G solvation = -4045.748548 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.144 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -40.06149 -38.40716 -37.63932 -37.14451 -36.15182 -34.50507 -32.48231 -32.32176 -30.55358 -29.16540 -28.10967 -26.99635 -25.93211 -24.45656 -23.86260 -21.27470 -20.18072 -19.10400 -18.75047 -17.84153 -17.20690 -16.98815 -16.94887 -16.54923 -16.22916 -15.80151 -15.56346 -15.31275 -15.11904 -14.71644 -14.07604 -14.00238 -13.86079 -13.52087 -12.95190 -12.69209 -12.57314 -12.28499 -12.23332 -12.18109 -12.11385 -11.97640 -11.88388 -11.83502 -11.72945 -11.23732 -11.01037 -10.98401 -10.94158 -10.82669 -10.46172 -10.21129 -10.19685 -10.01991 -9.80610 -9.71013 -8.76086 -8.33903 -6.89675 -5.82109 -3.14432 -0.42668 2.47339 2.50521 2.89790 3.19428 3.32833 3.39933 3.41138 3.71757 3.75428 4.17997 4.25313 4.29226 4.42121 4.63861 4.73768 4.88276 4.89735 4.92674 5.07657 5.19477 5.23630 5.27606 5.34364 5.37961 5.47361 5.66316 5.77760 5.95753 6.10479 6.24622 6.32930 6.43513 6.50795 6.56788 6.59977 6.86147 7.44044 7.45393 7.55934 7.72961 8.08233 8.14766 9.12415 9.71988 10.38249 11.29814 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.019308 B = 0.002701 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.819485 B =10363.750418 C =11158.361872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.384 6.384 3 C 0.074 3.926 4 C -0.630 4.630 5 S 2.460 3.540 6 O -0.915 6.915 7 O -0.917 6.917 8 C -0.651 4.651 9 C 0.538 3.462 10 O -0.544 6.544 11 N -0.573 5.573 12 C 0.064 3.936 13 C 0.120 3.880 14 H 0.104 0.896 15 C -0.156 4.156 16 C 0.170 3.830 17 N -0.603 5.603 18 C -0.226 4.226 19 H 0.077 0.923 20 C -0.006 4.006 21 N -0.922 5.922 22 Si 0.909 3.091 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.125 3.875 27 H 0.046 0.954 28 H 0.090 0.910 29 H 0.046 0.954 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.142 0.858 33 H 0.142 0.858 34 H 0.160 0.840 35 H 0.161 0.839 36 H 0.071 0.929 37 H 0.057 0.943 38 H 0.101 0.899 39 H 0.073 0.927 40 H 0.065 0.935 41 H 0.041 0.959 42 H 0.058 0.942 43 H 0.252 0.748 44 H 0.044 0.956 45 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.502 -6.189 -4.222 20.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.303 6.303 3 C -0.004 4.004 4 C -0.756 4.756 5 S 2.636 3.364 6 O -0.912 6.912 7 O -0.914 6.914 8 C -0.780 4.780 9 C 0.323 3.677 10 O -0.424 6.424 11 N -0.303 5.303 12 C -0.078 4.078 13 C 0.016 3.984 14 H 0.122 0.878 15 C -0.195 4.195 16 C 0.046 3.954 17 N -0.330 5.330 18 C -0.354 4.354 19 H 0.095 0.905 20 C -0.202 4.202 21 N -0.569 5.569 22 Si 0.740 3.260 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.207 1.207 26 C -0.002 4.002 27 H 0.064 0.936 28 H 0.109 0.891 29 H 0.065 0.935 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.160 0.840 33 H 0.161 0.839 34 H 0.178 0.822 35 H 0.179 0.821 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.119 0.881 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.059 0.941 42 H 0.076 0.924 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -19.860 -5.145 -4.195 20.940 hybrid contribution 1.054 -1.438 0.734 1.928 sum -18.806 -6.583 -3.461 20.223 Atomic orbital electron populations 1.22846 0.80332 1.03261 1.00581 1.87910 1.20234 1.26564 1.95543 1.22034 0.89514 0.86570 1.02241 1.30663 1.05911 1.26123 1.12933 1.07177 0.76974 0.76331 0.75900 1.93594 1.81386 1.70464 1.45758 1.93585 1.81465 1.70489 1.45835 1.30779 1.25712 1.07881 1.13610 1.19001 0.83215 0.88022 0.77484 1.90817 1.69213 1.30595 1.51745 1.47563 1.04191 1.08634 1.69945 1.22297 0.98447 0.82523 1.04540 1.22408 0.92517 0.85577 0.97887 0.87848 1.23274 0.96873 1.01792 0.97607 1.21371 0.93485 0.97869 0.82685 1.44498 1.27034 1.59244 1.02203 1.19053 1.08479 1.20885 0.86987 0.90485 1.24781 0.98914 1.00123 0.96423 1.69953 1.30610 1.40943 1.15425 0.86132 0.79090 0.79761 0.81004 1.21663 1.21780 1.20685 1.21930 0.88579 0.95176 0.94527 0.93559 0.89146 0.93534 0.91313 0.91328 0.83991 0.83939 0.82169 0.82085 0.90992 0.92435 0.88131 0.90865 0.91597 0.94053 0.92431 0.93726 0.93734 0.94977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.38 -3.49 10.70 -35.23 -0.38 -3.87 16 3 C 0.07 0.62 5.95 37.16 0.22 0.84 16 4 C -0.63 -4.43 6.18 37.16 0.23 -4.20 16 5 S 2.46 27.21 3.96 -107.50 -0.43 26.78 16 6 O -0.91 -13.55 17.95 -59.54 -1.07 -14.62 16 7 O -0.92 -13.21 17.95 -59.51 -1.07 -14.28 16 8 C -0.65 -6.58 4.76 36.00 0.17 -6.41 16 9 C 0.54 8.59 7.69 -10.99 -0.08 8.51 16 10 O -0.54 -10.54 15.03 2.56 0.04 -10.50 16 11 N -0.57 -9.47 2.91 -171.48 -0.50 -9.97 16 12 C 0.06 0.98 9.05 59.85 0.54 1.52 16 13 C 0.12 2.15 3.64 -65.78 -0.24 1.91 16 14 H 0.10 1.84 7.07 -51.93 -0.37 1.47 16 15 C -0.16 -2.76 6.07 -24.89 -0.15 -2.91 16 16 C 0.17 3.75 4.36 -3.06 -0.01 3.74 16 17 N -0.60 -14.22 2.87 -170.07 -0.49 -14.71 16 18 C -0.23 -5.90 10.27 -15.06 -0.15 -6.06 16 19 H 0.08 1.99 7.83 -52.48 -0.41 1.58 16 20 C -0.01 -0.16 5.48 -17.43 -0.10 -0.26 16 21 N -0.92 -25.20 10.35 55.49 0.57 -24.62 16 22 Si 0.91 21.09 29.56 -169.99 -5.02 16.06 16 23 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 C 0.12 2.54 6.76 -2.53 -0.02 2.52 16 27 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.14 0.69 8.14 -51.92 -0.42 0.27 16 33 H 0.14 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.16 1.02 7.42 -51.92 -0.39 0.63 16 35 H 0.16 1.15 8.11 -51.92 -0.42 0.72 16 36 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.06 0.63 6.23 -51.93 -0.32 0.31 16 38 H 0.10 1.74 4.19 -51.92 -0.22 1.52 16 39 H 0.07 1.21 8.14 -51.92 -0.42 0.79 16 40 H 0.07 1.06 8.07 -51.93 -0.42 0.64 16 41 H 0.04 1.04 7.63 -51.93 -0.40 0.64 16 42 H 0.06 1.34 4.99 -51.93 -0.26 1.09 16 43 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 44 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 373.20 15.07 5.62 5.62 Total: -1.00 -36.51 373.20 -8.18 -44.69 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -6.99 Total: -1.06 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: 1.52 Total: 0.48 kcal Atomic # 7 Polarization: -48.89 SS G_CDS: -0.41 Total: -49.30 kcal Atomic # 8 Polarization: -40.80 SS G_CDS: -2.48 Total: -43.27 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: 27.21 SS G_CDS: -0.43 Total: 26.78 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -36.51 -8.18 -44.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732161489.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.198 kcal (2) G-P(sol) polarization free energy of solvation -36.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds