Wall clock time and date at job start Tue Mar 31 2020 17:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 114.00329 * 2 1 4 4 C 1.53002 * 109.47282 * 179.97438 * 3 2 1 5 5 S 1.81395 * 109.46885 * 180.02562 * 4 3 2 6 6 O 1.42100 * 108.57913 * 65.51730 * 5 4 3 7 7 O 1.42095 * 108.58087 * 294.48703 * 5 4 3 8 8 C 1.81401 * 101.92119 * 180.02562 * 5 4 3 9 9 C 1.50695 * 109.47419 * 180.02562 * 8 5 4 10 10 O 1.21281 * 120.00176 * 0.02562 * 9 8 5 11 11 N 1.34776 * 120.00219 * 180.02562 * 9 8 5 12 12 C 1.46501 * 119.99687 * 0.02562 * 11 9 8 13 13 C 1.46501 * 120.00148 * 180.02562 * 11 9 8 14 14 H 1.08997 * 110.88772 * 350.51862 * 13 11 9 15 15 C 1.55159 * 111.00200 * 226.59868 * 13 11 9 16 16 C 1.54332 * 102.94088 * 277.42247 * 15 13 11 17 17 N 1.47015 * 107.27046 * 337.81224 * 16 15 13 18 18 C 1.36938 * 125.64960 * 178.96859 * 17 16 15 19 19 H 1.08003 * 120.00682 * 174.91674 * 18 17 16 20 20 C 1.38820 * 119.99661 * 354.92799 * 18 17 16 21 21 N 1.31618 * 120.00015 * 5.75512 * 20 18 17 22 22 Si 1.86800 * 119.99575 * 185.75373 * 20 18 17 23 23 H 1.48497 * 109.46783 * 94.99905 * 22 20 18 24 24 H 1.48511 * 109.46705 * 214.99303 * 22 20 18 25 25 H 1.48498 * 109.47415 * 334.99408 * 22 20 18 26 26 C 1.47428 * 108.70650 * 358.93702 * 17 16 15 27 27 H 1.09003 * 109.46613 * 59.99893 * 1 2 3 28 28 H 1.09001 * 109.47132 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.46850 * 299.99864 * 1 2 3 30 30 H 1.09005 * 109.46711 * 60.00282 * 3 2 1 31 31 H 1.08996 * 109.47352 * 300.00276 * 3 2 1 32 32 H 1.09005 * 109.46782 * 60.00614 * 4 3 2 33 33 H 1.08996 * 109.47388 * 300.00543 * 4 3 2 34 34 H 1.09006 * 109.46825 * 59.99750 * 8 5 4 35 35 H 1.09000 * 109.47392 * 300.00262 * 8 5 4 36 36 H 1.08999 * 109.47367 * 263.94014 * 12 11 9 37 37 H 1.08997 * 109.47279 * 23.94574 * 12 11 9 38 38 H 1.09010 * 109.47165 * 143.94466 * 12 11 9 39 39 H 1.09007 * 110.71659 * 159.06697 * 15 13 11 40 40 H 1.08994 * 110.72221 * 35.78885 * 15 13 11 41 41 H 1.08991 * 109.88259 * 218.39248 * 16 15 13 42 42 H 1.09001 * 109.87632 * 97.22762 * 16 15 13 43 43 H 0.96998 * 119.99488 * 179.97438 * 21 20 18 44 44 H 1.09005 * 110.36641 * 142.96807 * 26 17 16 45 45 H 1.08997 * 110.36504 * 265.28728 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1845 0.0006 5 16 4.2734 2.8417 0.0014 6 8 3.9470 3.4820 1.2273 7 8 3.9481 3.4827 -1.2243 8 6 6.0472 2.4621 0.0013 9 6 6.8358 3.7463 0.0025 10 8 6.2581 4.8126 0.0039 11 7 8.1830 3.7098 0.0022 12 6 8.8809 2.4217 0.0000 13 6 8.9496 4.9582 0.0039 14 1 8.2970 5.8153 -0.1623 15 6 10.0885 4.9130 -1.0489 16 6 11.2118 4.1547 -0.3105 17 7 10.9567 4.2921 1.1308 18 6 11.7152 3.7452 2.1312 19 1 11.4924 3.9717 3.1634 20 6 12.7709 2.8996 1.8186 21 7 13.1145 2.7128 0.5618 22 14 13.7038 2.0271 3.1816 23 1 13.1377 0.6683 3.3774 24 1 15.1371 1.9172 2.8086 25 1 13.5783 2.8021 4.4421 26 6 9.7496 5.1168 1.3209 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6887 1.8463 0.8901 31 1 1.6887 1.8464 -0.8899 32 1 3.8575 0.6435 -0.8892 33 1 3.8569 0.6437 0.8908 34 1 6.2950 1.8839 -0.8890 35 1 6.2950 1.8832 0.8910 36 1 9.1496 2.1523 1.0214 37 1 8.2281 1.6555 -0.4182 38 1 9.7844 2.4989 -0.6050 39 1 10.4114 5.9205 -1.3112 40 1 9.7719 4.3649 -1.9362 41 1 12.1791 4.5911 -0.5591 42 1 11.1946 3.1016 -0.5913 43 1 13.8524 2.1223 0.3435 44 1 9.1672 4.7479 2.1653 45 1 10.0236 6.1604 1.4751 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732161489.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:13 Heat of formation + Delta-G solvation = -128.533942 kcal Electronic energy + Delta-G solvation = -27700.388001 eV Core-core repulsion = 23653.397384 eV Total energy + Delta-G solvation = -4046.990616 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.144 amu Computer time = 2.33 seconds Orbital eigenvalues (eV) -41.38827 -39.18248 -38.96904 -38.09109 -37.09536 -36.01699 -34.15499 -32.98159 -31.80657 -30.75922 -29.58900 -27.48197 -27.36866 -26.22451 -24.54582 -22.61558 -21.95718 -20.22921 -19.81249 -18.97009 -18.80155 -17.92825 -17.69945 -17.67123 -17.06304 -16.83668 -16.62916 -16.47928 -16.34851 -15.84432 -15.63643 -15.38741 -14.76757 -14.55270 -14.43686 -13.84655 -13.64885 -13.54217 -13.43557 -13.19329 -13.16704 -13.10199 -13.09585 -12.83799 -12.79577 -12.68956 -12.45585 -12.34331 -12.08038 -12.02936 -11.99898 -11.84179 -11.70700 -11.55048 -11.13332 -10.76309 -10.65220 -9.79142 -8.80829 -7.83457 -5.16833 -1.23907 1.31892 1.48458 1.50061 1.58081 1.70387 1.79869 2.46950 2.50954 2.96353 3.00938 3.29629 3.35858 3.59529 3.65523 3.72871 3.82250 3.93623 4.00989 4.18753 4.21220 4.28167 4.38787 4.43956 4.47976 4.56847 4.61463 4.66173 4.70438 4.72248 4.85515 4.87855 4.93632 5.01962 5.13981 5.45263 5.49664 5.66836 5.82445 6.02669 6.21925 6.28157 6.84637 7.13575 7.77786 8.43427 9.26669 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.019308 B = 0.002701 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.819485 B =10363.750418 C =11158.361872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.399 6.399 3 C 0.057 3.943 4 C -0.600 4.600 5 S 2.456 3.544 6 O -0.967 6.967 7 O -0.962 6.962 8 C -0.645 4.645 9 C 0.527 3.473 10 O -0.585 6.585 11 N -0.578 5.578 12 C 0.067 3.933 13 C 0.127 3.873 14 H 0.106 0.894 15 C -0.140 4.140 16 C 0.180 3.820 17 N -0.615 5.615 18 C -0.237 4.237 19 H 0.074 0.926 20 C -0.052 4.052 21 N -0.943 5.943 22 Si 0.970 3.030 23 H -0.283 1.283 24 H -0.298 1.298 25 H -0.277 1.277 26 C 0.123 3.877 27 H 0.053 0.947 28 H 0.104 0.896 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.175 0.825 33 H 0.171 0.829 34 H 0.208 0.792 35 H 0.198 0.802 36 H 0.049 0.951 37 H 0.110 0.890 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.002 0.998 42 H 0.046 0.954 43 H 0.248 0.752 44 H 0.037 0.963 45 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.658 -8.559 -4.496 22.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.318 6.318 3 C -0.021 4.021 4 C -0.730 4.730 5 S 2.638 3.362 6 O -0.964 6.964 7 O -0.959 6.959 8 C -0.773 4.773 9 C 0.315 3.685 10 O -0.467 6.467 11 N -0.308 5.308 12 C -0.074 4.074 13 C 0.022 3.978 14 H 0.124 0.876 15 C -0.179 4.179 16 C 0.056 3.944 17 N -0.342 5.342 18 C -0.366 4.366 19 H 0.091 0.909 20 C -0.246 4.246 21 N -0.592 5.592 22 Si 0.799 3.201 23 H -0.210 1.210 24 H -0.225 1.225 25 H -0.202 1.202 26 C -0.003 4.003 27 H 0.072 0.928 28 H 0.123 0.877 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.193 0.807 33 H 0.189 0.811 34 H 0.225 0.775 35 H 0.215 0.785 36 H 0.068 0.932 37 H 0.128 0.872 38 H 0.097 0.903 39 H 0.103 0.897 40 H 0.105 0.895 41 H 0.021 0.979 42 H 0.064 0.936 43 H 0.057 0.943 44 H 0.055 0.945 45 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -21.038 -7.471 -4.462 22.767 hybrid contribution 1.356 -0.725 0.842 1.753 sum -19.682 -8.196 -3.621 21.626 Atomic orbital electron populations 1.23073 0.79079 1.04499 1.01322 1.87863 1.21712 1.26576 1.95679 1.22224 0.90457 0.86759 1.02675 1.30331 1.04641 1.21987 1.16054 1.06881 0.77356 0.77877 0.74038 1.93534 1.82302 1.73361 1.47192 1.93530 1.82264 1.73216 1.46926 1.30769 1.23340 1.05549 1.17671 1.19872 0.82966 0.89624 0.76050 1.90806 1.69856 1.32902 1.53159 1.47625 1.04655 1.08360 1.70114 1.22285 0.98875 0.83174 1.03112 1.22206 0.92462 0.87003 0.96147 0.87579 1.23136 0.94973 1.02089 0.97679 1.21175 0.93272 0.97516 0.82456 1.44661 1.27715 1.59358 1.02484 1.19290 1.08836 1.20939 0.87566 0.90860 1.25445 0.99884 1.00967 0.98329 1.70130 1.30853 1.41359 1.16815 0.85195 0.77310 0.78827 0.78762 1.20986 1.22474 1.20230 1.22003 0.87865 0.94572 0.95863 0.92790 0.87715 0.92921 0.91278 0.91007 0.80746 0.81121 0.77524 0.78454 0.93243 0.87158 0.90260 0.89707 0.89473 0.97930 0.93629 0.94270 0.94451 0.94885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 11.01 113.37 1.25 1.41 16 2 O -0.40 -6.18 10.70 -148.98 -1.59 -7.77 16 3 C 0.06 0.82 5.95 71.98 0.43 1.25 16 4 C -0.60 -6.08 6.18 71.98 0.44 -5.64 16 5 S 2.46 49.77 3.96 -56.49 -0.22 49.55 16 6 O -0.97 -28.45 17.95 -125.74 -2.26 -30.71 16 7 O -0.96 -27.09 17.95 -125.77 -2.26 -29.35 16 8 C -0.64 -10.54 4.76 71.23 0.34 -10.21 16 9 C 0.53 15.83 7.69 87.66 0.67 16.50 16 10 O -0.58 -22.50 15.03 -0.17 0.00 -22.50 16 11 N -0.58 -18.09 2.91 -814.83 -2.37 -20.46 16 12 C 0.07 1.90 9.05 127.77 1.16 3.06 16 13 C 0.13 4.46 3.64 46.38 0.17 4.63 16 14 H 0.11 3.73 7.07 -2.39 -0.02 3.71 16 15 C -0.14 -4.82 6.07 31.79 0.19 -4.63 16 16 C 0.18 8.05 4.36 86.73 0.38 8.43 16 17 N -0.62 -29.40 2.87 -691.98 -1.98 -31.38 16 18 C -0.24 -12.55 10.27 84.04 0.86 -11.68 16 19 H 0.07 3.83 7.83 -2.91 -0.02 3.81 16 20 C -0.05 -2.79 5.48 84.86 0.47 -2.32 16 21 N -0.94 -52.27 10.35 21.65 0.22 -52.04 16 22 Si 0.97 43.43 29.56 68.60 2.03 45.46 16 23 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 24 H -0.30 -13.58 7.11 99.48 0.71 -12.87 16 25 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 26 C 0.12 5.05 6.76 86.85 0.59 5.64 16 27 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.07 0.96 8.14 -2.38 -0.02 0.95 16 31 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.17 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.17 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.21 1.38 7.42 -2.39 -0.02 1.36 16 35 H 0.20 1.81 8.11 -2.39 -0.02 1.79 16 36 H 0.05 1.62 8.14 -2.39 -0.02 1.61 16 37 H 0.11 1.88 6.23 -2.39 -0.01 1.87 16 38 H 0.08 2.64 4.19 -2.38 -0.01 2.63 16 39 H 0.08 2.72 8.14 -2.38 -0.02 2.70 16 40 H 0.09 2.65 8.07 -2.39 -0.02 2.63 16 41 H 0.00 0.13 7.63 -2.39 -0.02 0.11 16 42 H 0.05 2.16 4.99 -2.39 -0.01 2.15 16 43 H 0.25 13.45 8.31 -92.71 -0.77 12.68 16 44 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 45 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -83.21 373.20 -0.51 -83.72 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: 0.99 Total: 9.06 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: 6.95 Total: 6.43 kcal Atomic # 7 Polarization: -99.76 SS G_CDS: -4.13 Total: -103.88 kcal Atomic # 8 Polarization: -84.22 SS G_CDS: -6.11 Total: -90.33 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 16 Polarization: 49.77 SS G_CDS: -0.22 Total: 49.55 kcal Total: -83.21 -0.51 -83.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732161489.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.818 kcal (2) G-P(sol) polarization free energy of solvation -83.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.33 seconds