Wall clock time and date at job start Tue Mar 31 2020 17:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 113.99892 * 2 1 4 4 C 1.52998 * 109.47443 * 179.97438 * 3 2 1 5 5 S 1.81396 * 109.47176 * 179.97438 * 4 3 2 6 6 O 1.42099 * 108.58190 * 294.48713 * 5 4 3 7 7 O 1.42100 * 108.57851 * 65.51416 * 5 4 3 8 8 C 1.81405 * 101.92088 * 180.02562 * 5 4 3 9 9 C 1.50696 * 109.47038 * 179.97438 * 8 5 4 10 10 O 1.21278 * 120.00453 * 0.02562 * 9 8 5 11 11 N 1.34779 * 119.99939 * 179.97438 * 9 8 5 12 12 C 1.46497 * 119.99819 * 0.02562 * 11 9 8 13 13 C 1.46501 * 119.99999 * 180.02562 * 11 9 8 14 14 H 1.08997 * 110.64452 * 1.68933 * 13 11 9 15 15 C 1.55161 * 110.71992 * 125.02602 * 13 11 9 16 16 C 1.54908 * 101.58263 * 153.86457 * 15 13 11 17 17 N 1.47433 * 104.83322 * 322.99360 * 16 15 13 18 18 C 1.36932 * 125.64623 * 204.09278 * 17 16 15 19 19 H 1.08002 * 119.99620 * 169.98297 * 18 17 16 20 20 C 1.38814 * 120.00282 * 349.98492 * 18 17 16 21 21 N 1.31618 * 119.99622 * 350.41643 * 20 18 17 22 22 Si 1.86800 * 119.99874 * 170.41987 * 20 18 17 23 23 H 1.48506 * 109.46819 * 94.13954 * 22 20 18 24 24 H 1.48494 * 109.46922 * 214.13763 * 22 20 18 25 25 H 1.48498 * 109.47244 * 334.14099 * 22 20 18 26 26 C 1.47024 * 108.70247 * 24.12641 * 17 16 15 27 27 H 1.09001 * 109.47412 * 60.00312 * 1 2 3 28 28 H 1.09003 * 109.46628 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47285 * 299.99811 * 1 2 3 30 30 H 1.09005 * 109.47046 * 300.00352 * 3 2 1 31 31 H 1.09006 * 109.47199 * 59.99717 * 3 2 1 32 32 H 1.08998 * 109.47107 * 300.00234 * 4 3 2 33 33 H 1.09003 * 109.46498 * 60.00048 * 4 3 2 34 34 H 1.08999 * 109.46812 * 300.00091 * 8 5 4 35 35 H 1.09000 * 109.47255 * 60.00401 * 8 5 4 36 36 H 1.09003 * 109.47096 * 89.99909 * 12 11 9 37 37 H 1.09008 * 109.47074 * 209.99593 * 12 11 9 38 38 H 1.08994 * 109.47334 * 329.99569 * 12 11 9 39 39 H 1.09002 * 111.00325 * 271.93909 * 15 13 11 40 40 H 1.09000 * 110.99973 * 35.79062 * 15 13 11 41 41 H 1.08996 * 110.37065 * 204.15530 * 16 15 13 42 42 H 1.09001 * 110.45791 * 81.87559 * 16 15 13 43 43 H 0.97001 * 119.99570 * 179.97438 * 21 20 18 44 44 H 1.08995 * 109.88101 * 239.52876 * 26 17 16 45 45 H 1.08999 * 109.88188 * 118.36063 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 16 4.2731 2.8419 -0.0001 6 8 3.9477 3.4819 -1.2264 7 8 3.9467 3.4834 1.2252 8 6 6.0470 2.4624 0.0000 9 6 6.8354 3.7467 -0.0012 10 8 6.2577 4.8130 -0.0016 11 7 8.1827 3.7103 -0.0009 12 6 8.8807 2.4223 0.0002 13 6 8.9492 4.9588 -0.0015 14 1 8.2814 5.8198 0.0278 15 6 9.9459 4.9917 1.1872 16 6 11.0434 5.9420 0.6467 17 7 11.1477 5.6206 -0.7884 18 6 12.2459 5.8375 -1.5770 19 1 12.2854 5.4231 -2.5736 20 6 13.3085 6.5899 -1.0955 21 7 13.1875 7.2503 0.0365 22 14 14.9098 6.6652 -2.0544 23 1 14.9023 7.8590 -2.9376 24 1 16.0499 6.7572 -1.1074 25 1 15.0502 5.4392 -2.8806 26 6 9.8770 5.0293 -1.2327 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.6885 1.8464 -0.8900 31 1 1.6885 1.8464 0.8900 32 1 3.8567 0.6440 0.8908 33 1 3.8573 0.6437 -0.8892 34 1 6.2948 1.8844 0.8902 35 1 6.2948 1.8836 -0.8898 36 1 9.0540 2.1022 -1.0273 37 1 9.8362 2.5272 0.5142 38 1 8.2712 1.6792 0.5144 39 1 9.4761 5.4050 2.0797 40 1 10.3511 3.9993 1.3847 41 1 11.9919 5.7504 1.1482 42 1 10.7469 6.9822 0.7818 43 1 13.9302 7.7758 0.3731 44 1 10.0512 4.0268 -1.6234 45 1 9.4255 5.6559 -2.0018 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732161490.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:20 Heat of formation + Delta-G solvation = -105.327579 kcal Electronic energy + Delta-G solvation = -27136.961151 eV Core-core repulsion = 23090.976838 eV Total energy + Delta-G solvation = -4045.984313 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.144 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -40.15553 -38.47450 -37.53504 -37.24149 -36.24571 -35.01224 -32.53157 -32.34646 -30.75125 -29.14374 -27.65644 -27.06210 -26.61460 -24.51397 -23.91786 -21.06732 -20.33036 -19.20270 -18.91042 -17.98753 -17.22006 -17.09411 -17.01250 -16.68371 -16.32134 -15.88924 -15.67138 -15.39721 -15.20660 -14.69345 -14.19034 -14.12610 -13.83643 -13.58548 -13.10060 -12.87623 -12.76683 -12.61531 -12.31211 -12.28522 -12.23381 -12.20149 -12.00883 -11.94916 -11.68683 -11.36794 -11.07955 -11.01687 -10.92501 -10.84521 -10.55935 -10.27666 -10.13581 -10.07221 -9.92702 -9.72239 -8.64624 -8.56086 -6.86189 -5.78995 -3.12449 -0.53868 2.34280 2.36421 2.72603 3.07679 3.37243 3.42825 3.44746 3.60255 3.64049 4.08748 4.10457 4.14000 4.46521 4.50649 4.66728 4.72505 4.82360 4.83846 4.99845 5.02422 5.10427 5.18449 5.25571 5.33635 5.43792 5.47051 5.60197 5.63716 5.82031 6.08260 6.24345 6.42993 6.47061 6.49935 6.63740 6.79884 7.29816 7.42071 7.53197 7.72927 7.90538 8.20411 9.14031 9.75623 10.42202 11.33984 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.039738 B = 0.002130 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.450203 B =13142.318811 C =13280.257481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.384 6.384 3 C 0.073 3.927 4 C -0.629 4.629 5 S 2.459 3.541 6 O -0.913 6.913 7 O -0.914 6.914 8 C -0.653 4.653 9 C 0.539 3.461 10 O -0.532 6.532 11 N -0.587 5.587 12 C 0.069 3.931 13 C 0.123 3.877 14 H 0.109 0.891 15 C -0.155 4.155 16 C 0.174 3.826 17 N -0.601 5.601 18 C -0.231 4.231 19 H 0.076 0.924 20 C -0.006 4.006 21 N -0.917 5.917 22 Si 0.912 3.088 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.129 3.871 27 H 0.046 0.954 28 H 0.090 0.910 29 H 0.046 0.954 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.142 0.858 33 H 0.142 0.858 34 H 0.161 0.839 35 H 0.161 0.839 36 H 0.062 0.938 37 H 0.086 0.914 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.031 0.969 43 H 0.254 0.746 44 H 0.028 0.972 45 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.360 -18.187 2.556 27.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.303 6.303 3 C -0.004 4.004 4 C -0.755 4.755 5 S 2.634 3.366 6 O -0.910 6.910 7 O -0.911 6.911 8 C -0.782 4.782 9 C 0.324 3.676 10 O -0.410 6.410 11 N -0.318 5.318 12 C -0.074 4.074 13 C 0.020 3.980 14 H 0.127 0.873 15 C -0.194 4.194 16 C 0.049 3.951 17 N -0.328 5.328 18 C -0.359 4.359 19 H 0.094 0.906 20 C -0.203 4.203 21 N -0.564 5.564 22 Si 0.742 3.258 23 H -0.215 1.215 24 H -0.216 1.216 25 H -0.206 1.206 26 C 0.002 3.998 27 H 0.065 0.935 28 H 0.109 0.891 29 H 0.065 0.935 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.160 0.840 33 H 0.160 0.840 34 H 0.179 0.821 35 H 0.179 0.821 36 H 0.081 0.919 37 H 0.105 0.895 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.049 0.951 43 H 0.064 0.936 44 H 0.046 0.954 45 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -20.728 -16.885 2.564 26.857 hybrid contribution 1.258 -0.803 -0.521 1.581 sum -19.470 -17.688 2.043 26.384 Atomic orbital electron populations 1.22852 0.80247 1.03292 1.00645 1.87900 1.20308 1.26538 1.95557 1.22038 0.89452 0.86606 1.02336 1.30655 1.06016 1.26015 1.12846 1.07259 0.76924 0.76400 0.75996 1.93604 1.81278 1.70403 1.45709 1.93600 1.81277 1.70375 1.45833 1.30810 1.26193 1.07684 1.13492 1.19020 0.83129 0.88152 0.77281 1.90857 1.69004 1.30630 1.50524 1.47723 1.04640 1.08296 1.71170 1.21914 0.98960 0.83975 1.02544 1.22400 0.92879 0.85312 0.97400 0.87275 1.23417 0.97847 1.01587 0.96556 1.21414 0.95363 0.94223 0.84124 1.44425 1.09458 1.72807 1.06067 1.19001 0.92711 1.26925 0.97259 0.90575 1.24842 0.99171 0.98307 0.97977 1.69950 1.31175 1.33647 1.21608 0.86109 0.83167 0.77749 0.78746 1.21548 1.21588 1.20612 1.21524 0.87457 0.97002 0.93793 0.93502 0.89121 0.93504 0.91258 0.91281 0.84008 0.83983 0.82120 0.82093 0.91907 0.89533 0.91239 0.91595 0.91540 0.90868 0.95077 0.93595 0.95418 0.95401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 11.01 101.05 1.11 1.25 16 2 O -0.38 -3.15 10.70 -35.23 -0.38 -3.52 16 3 C 0.07 0.55 5.95 37.16 0.22 0.77 16 4 C -0.63 -3.59 6.17 37.16 0.23 -3.37 16 5 S 2.46 24.29 3.96 -107.50 -0.43 23.87 16 6 O -0.91 -12.61 17.94 -59.54 -1.07 -13.68 16 7 O -0.91 -12.44 17.95 -59.51 -1.07 -13.51 16 8 C -0.65 -5.26 4.84 36.00 0.17 -5.09 16 9 C 0.54 7.83 7.69 -10.99 -0.08 7.74 16 10 O -0.53 -10.07 14.99 2.56 0.04 -10.03 16 11 N -0.59 -8.48 2.88 -171.83 -0.50 -8.98 16 12 C 0.07 0.71 9.13 59.85 0.55 1.26 16 13 C 0.12 2.24 3.36 -66.09 -0.22 2.02 16 14 H 0.11 2.17 6.99 -51.93 -0.36 1.81 16 15 C -0.15 -2.82 6.61 -24.58 -0.16 -2.98 16 16 C 0.17 4.12 5.42 -2.52 -0.01 4.10 16 17 N -0.60 -15.13 3.39 -170.07 -0.58 -15.70 16 18 C -0.23 -6.35 10.24 -15.06 -0.15 -6.50 16 19 H 0.08 2.03 7.85 -52.49 -0.41 1.62 16 20 C -0.01 -0.17 5.40 -17.43 -0.09 -0.26 16 21 N -0.92 -26.61 10.68 55.49 0.59 -26.02 16 22 Si 0.91 21.77 29.56 -169.99 -5.03 16.74 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 C 0.13 2.70 6.88 -3.06 -0.02 2.68 16 27 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.21 8.14 -51.93 -0.42 -0.22 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.14 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.14 0.51 8.14 -51.92 -0.42 0.08 16 34 H 0.16 0.65 7.40 -51.92 -0.38 0.26 16 35 H 0.16 0.70 8.11 -51.92 -0.42 0.28 16 36 H 0.06 0.60 7.89 -51.93 -0.41 0.19 16 37 H 0.09 0.97 6.08 -51.92 -0.32 0.66 16 38 H 0.07 0.44 6.44 -51.93 -0.33 0.11 16 39 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.07 1.10 6.09 -51.93 -0.32 0.79 16 41 H 0.07 1.90 6.93 -51.93 -0.36 1.54 16 42 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 43 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 44 H 0.03 0.55 6.94 -51.93 -0.36 0.19 16 45 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 376.48 15.07 5.67 5.67 Total: -1.00 -39.23 376.48 -8.24 -47.47 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -7.04 Total: -3.93 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: 1.53 Total: 1.61 kcal Atomic # 7 Polarization: -50.22 SS G_CDS: -0.48 Total: -50.70 kcal Atomic # 8 Polarization: -38.26 SS G_CDS: -2.48 Total: -40.74 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.74 kcal Atomic # 16 Polarization: 24.29 SS G_CDS: -0.43 Total: 23.87 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -39.23 -8.24 -47.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732161490.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.858 kcal (2) G-P(sol) polarization free energy of solvation -39.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds