Wall clock time and date at job start Tue Mar 31 2020 17:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 113.99892 * 2 1 4 4 C 1.52998 * 109.47443 * 179.97438 * 3 2 1 5 5 S 1.81396 * 109.47176 * 179.97438 * 4 3 2 6 6 O 1.42099 * 108.58190 * 294.48713 * 5 4 3 7 7 O 1.42100 * 108.57851 * 65.51416 * 5 4 3 8 8 C 1.81405 * 101.92088 * 180.02562 * 5 4 3 9 9 C 1.50696 * 109.47038 * 179.97438 * 8 5 4 10 10 O 1.21278 * 120.00453 * 0.02562 * 9 8 5 11 11 N 1.34779 * 119.99939 * 179.97438 * 9 8 5 12 12 C 1.46497 * 119.99819 * 0.02562 * 11 9 8 13 13 C 1.46501 * 119.99999 * 180.02562 * 11 9 8 14 14 H 1.08997 * 110.64452 * 1.68933 * 13 11 9 15 15 C 1.55161 * 110.71992 * 125.02602 * 13 11 9 16 16 C 1.54908 * 101.58263 * 153.86457 * 15 13 11 17 17 N 1.47433 * 104.83322 * 322.99360 * 16 15 13 18 18 C 1.36932 * 125.64623 * 204.09278 * 17 16 15 19 19 H 1.08002 * 119.99620 * 169.98297 * 18 17 16 20 20 C 1.38814 * 120.00282 * 349.98492 * 18 17 16 21 21 N 1.31618 * 119.99622 * 350.41643 * 20 18 17 22 22 Si 1.86800 * 119.99874 * 170.41987 * 20 18 17 23 23 H 1.48506 * 109.46819 * 94.13954 * 22 20 18 24 24 H 1.48494 * 109.46922 * 214.13763 * 22 20 18 25 25 H 1.48498 * 109.47244 * 334.14099 * 22 20 18 26 26 C 1.47024 * 108.70247 * 24.12641 * 17 16 15 27 27 H 1.09001 * 109.47412 * 60.00312 * 1 2 3 28 28 H 1.09003 * 109.46628 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47285 * 299.99811 * 1 2 3 30 30 H 1.09005 * 109.47046 * 300.00352 * 3 2 1 31 31 H 1.09006 * 109.47199 * 59.99717 * 3 2 1 32 32 H 1.08998 * 109.47107 * 300.00234 * 4 3 2 33 33 H 1.09003 * 109.46498 * 60.00048 * 4 3 2 34 34 H 1.08999 * 109.46812 * 300.00091 * 8 5 4 35 35 H 1.09000 * 109.47255 * 60.00401 * 8 5 4 36 36 H 1.09003 * 109.47096 * 89.99909 * 12 11 9 37 37 H 1.09008 * 109.47074 * 209.99593 * 12 11 9 38 38 H 1.08994 * 109.47334 * 329.99569 * 12 11 9 39 39 H 1.09002 * 111.00325 * 271.93909 * 15 13 11 40 40 H 1.09000 * 110.99973 * 35.79062 * 15 13 11 41 41 H 1.08996 * 110.37065 * 204.15530 * 16 15 13 42 42 H 1.09001 * 110.45791 * 81.87559 * 16 15 13 43 43 H 0.97001 * 119.99570 * 179.97438 * 21 20 18 44 44 H 1.08995 * 109.88101 * 239.52876 * 26 17 16 45 45 H 1.08999 * 109.88188 * 118.36063 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 16 4.2731 2.8419 -0.0001 6 8 3.9477 3.4819 -1.2264 7 8 3.9467 3.4834 1.2252 8 6 6.0470 2.4624 0.0000 9 6 6.8354 3.7467 -0.0012 10 8 6.2577 4.8130 -0.0016 11 7 8.1827 3.7103 -0.0009 12 6 8.8807 2.4223 0.0002 13 6 8.9492 4.9588 -0.0015 14 1 8.2814 5.8198 0.0278 15 6 9.9459 4.9917 1.1872 16 6 11.0434 5.9420 0.6467 17 7 11.1477 5.6206 -0.7884 18 6 12.2459 5.8375 -1.5770 19 1 12.2854 5.4231 -2.5736 20 6 13.3085 6.5899 -1.0955 21 7 13.1875 7.2503 0.0365 22 14 14.9098 6.6652 -2.0544 23 1 14.9023 7.8590 -2.9376 24 1 16.0499 6.7572 -1.1074 25 1 15.0502 5.4392 -2.8806 26 6 9.8770 5.0293 -1.2327 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.6885 1.8464 -0.8900 31 1 1.6885 1.8464 0.8900 32 1 3.8567 0.6440 0.8908 33 1 3.8573 0.6437 -0.8892 34 1 6.2948 1.8844 0.8902 35 1 6.2948 1.8836 -0.8898 36 1 9.0540 2.1022 -1.0273 37 1 9.8362 2.5272 0.5142 38 1 8.2712 1.6792 0.5144 39 1 9.4761 5.4050 2.0797 40 1 10.3511 3.9993 1.3847 41 1 11.9919 5.7504 1.1482 42 1 10.7469 6.9822 0.7818 43 1 13.9302 7.7758 0.3731 44 1 10.0512 4.0268 -1.6234 45 1 9.4255 5.6559 -2.0018 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732161490.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:19 Heat of formation + Delta-G solvation = -137.729138 kcal Electronic energy + Delta-G solvation = -27138.366188 eV Core-core repulsion = 23090.976838 eV Total energy + Delta-G solvation = -4047.389350 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.144 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -41.34782 -39.11467 -38.96536 -38.08636 -37.08910 -36.40893 -34.20873 -32.97805 -31.90502 -30.80772 -29.07122 -27.77863 -27.47169 -26.37190 -24.52731 -22.39607 -22.19582 -20.30713 -19.80821 -18.94979 -18.85410 -17.97163 -17.74286 -17.65675 -17.03875 -16.88832 -16.64026 -16.45407 -16.30342 -15.89201 -15.79822 -15.31224 -14.58798 -14.52444 -14.49459 -14.14974 -13.85003 -13.67337 -13.52277 -13.18707 -13.17083 -13.12100 -13.08397 -12.86641 -12.72794 -12.68166 -12.46139 -12.44556 -12.26070 -12.02998 -12.00969 -11.84204 -11.67004 -11.53113 -11.30271 -10.76450 -10.71397 -9.77750 -8.91363 -7.90143 -5.26464 -1.23737 1.30440 1.46885 1.48157 1.57884 1.69826 1.73353 2.45797 2.50470 2.96304 3.01688 3.28812 3.29827 3.60479 3.66974 3.74275 3.78381 3.89400 3.96884 4.16718 4.19725 4.21235 4.33626 4.44465 4.48146 4.50666 4.56974 4.60981 4.69918 4.73235 4.84019 4.85760 4.94393 5.01871 5.06135 5.39193 5.44235 5.53052 5.66918 6.02057 6.16376 6.20112 6.83470 7.04452 7.71121 8.37340 9.21767 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.039738 B = 0.002130 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.450203 B =13142.318811 C =13280.257481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.397 6.397 3 C 0.055 3.945 4 C -0.595 4.595 5 S 2.446 3.554 6 O -0.970 6.970 7 O -0.968 6.968 8 C -0.636 4.636 9 C 0.524 3.476 10 O -0.589 6.589 11 N -0.587 5.587 12 C 0.056 3.944 13 C 0.134 3.866 14 H 0.082 0.918 15 C -0.133 4.133 16 C 0.179 3.821 17 N -0.620 5.620 18 C -0.245 4.245 19 H 0.081 0.919 20 C -0.063 4.063 21 N -0.949 5.949 22 Si 0.981 3.019 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.265 1.265 26 C 0.130 3.870 27 H 0.051 0.949 28 H 0.105 0.895 29 H 0.052 0.948 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.177 0.823 33 H 0.175 0.825 34 H 0.214 0.786 35 H 0.210 0.790 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.122 0.878 39 H 0.079 0.921 40 H 0.093 0.907 41 H 0.046 0.954 42 H -0.007 1.007 43 H 0.249 0.751 44 H 0.051 0.949 45 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.536 -22.609 2.360 30.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.317 6.317 3 C -0.023 4.023 4 C -0.726 4.726 5 S 2.629 3.371 6 O -0.967 6.967 7 O -0.965 6.965 8 C -0.765 4.765 9 C 0.312 3.688 10 O -0.471 6.471 11 N -0.317 5.317 12 C -0.085 4.085 13 C 0.029 3.971 14 H 0.100 0.900 15 C -0.172 4.172 16 C 0.053 3.947 17 N -0.347 5.347 18 C -0.374 4.374 19 H 0.099 0.901 20 C -0.257 4.257 21 N -0.597 5.597 22 Si 0.809 3.191 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.189 1.189 26 C 0.004 3.996 27 H 0.070 0.930 28 H 0.124 0.876 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.195 0.805 33 H 0.193 0.807 34 H 0.231 0.769 35 H 0.227 0.773 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.140 0.860 39 H 0.098 0.902 40 H 0.111 0.889 41 H 0.064 0.936 42 H 0.011 0.989 43 H 0.059 0.941 44 H 0.069 0.931 45 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges -20.930 -21.315 2.356 29.966 hybrid contribution 1.234 0.502 -0.491 1.420 sum -19.696 -20.813 1.866 28.716 Atomic orbital electron populations 1.23070 0.79138 1.04520 1.01259 1.87854 1.21641 1.26521 1.95670 1.22229 0.90794 0.86745 1.02534 1.30300 1.04311 1.21706 1.16273 1.07111 0.77924 0.78090 0.73979 1.93540 1.82527 1.73473 1.47170 1.93538 1.82466 1.73360 1.47113 1.30718 1.22455 1.04956 1.18396 1.20046 0.83122 0.89776 0.75815 1.90848 1.70058 1.33547 1.52662 1.47733 1.04826 1.08208 1.70950 1.22330 0.99285 0.82715 1.04145 1.21877 0.92222 0.87128 0.95825 0.89972 1.23209 0.95831 1.01455 0.96713 1.21189 0.95837 0.93696 0.83961 1.44707 1.10506 1.72814 1.06660 1.19396 0.93652 1.26602 0.97753 0.90082 1.25710 1.02468 0.98331 0.99148 1.70157 1.31767 1.34504 1.23243 0.85040 0.78772 0.77984 0.77327 1.21726 1.21765 1.18942 1.21608 0.86254 0.97129 0.94638 0.92986 0.87624 0.92911 0.91414 0.91298 0.80544 0.80715 0.76883 0.77292 0.90617 0.90447 0.86002 0.90249 0.88906 0.93580 0.98873 0.94142 0.93119 0.97349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 11.01 113.37 1.25 1.39 16 2 O -0.40 -5.42 10.70 -148.98 -1.59 -7.02 16 3 C 0.05 0.70 5.95 71.98 0.43 1.13 16 4 C -0.60 -4.27 6.17 71.98 0.44 -3.83 16 5 S 2.45 44.07 3.96 -56.49 -0.22 43.85 16 6 O -0.97 -27.04 17.94 -125.73 -2.26 -29.29 16 7 O -0.97 -26.34 17.95 -125.77 -2.26 -28.60 16 8 C -0.64 -7.21 4.84 71.23 0.34 -6.87 16 9 C 0.52 14.13 7.69 87.66 0.67 14.80 16 10 O -0.59 -22.79 14.99 -0.16 0.00 -22.79 16 11 N -0.59 -15.43 2.88 -815.95 -2.35 -17.78 16 12 C 0.06 0.87 9.13 127.77 1.17 2.04 16 13 C 0.13 4.87 3.36 46.18 0.16 5.03 16 14 H 0.08 3.43 6.99 -2.39 -0.02 3.42 16 15 C -0.13 -4.79 6.61 31.99 0.21 -4.58 16 16 C 0.18 8.77 5.42 86.85 0.47 9.24 16 17 N -0.62 -31.88 3.39 -691.97 -2.35 -34.23 16 18 C -0.25 -13.67 10.24 84.03 0.86 -12.81 16 19 H 0.08 4.32 7.85 -2.91 -0.02 4.30 16 20 C -0.06 -3.56 5.40 84.86 0.46 -3.11 16 21 N -0.95 -56.93 10.68 21.65 0.23 -56.70 16 22 Si 0.98 45.21 29.56 68.60 2.03 47.23 16 23 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 24 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 25 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 26 C 0.13 5.45 6.88 86.73 0.60 6.05 16 27 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 28 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 31 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.18 0.14 8.14 -2.39 -0.02 0.12 16 33 H 0.18 0.22 8.14 -2.39 -0.02 0.20 16 34 H 0.21 0.14 7.40 -2.39 -0.02 0.12 16 35 H 0.21 0.37 8.11 -2.39 -0.02 0.35 16 36 H 0.08 1.03 7.89 -2.39 -0.02 1.01 16 37 H 0.08 1.40 6.08 -2.38 -0.01 1.39 16 38 H 0.12 0.63 6.44 -2.39 -0.02 0.62 16 39 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 40 H 0.09 2.87 6.09 -2.39 -0.01 2.85 16 41 H 0.05 2.48 6.93 -2.39 -0.02 2.46 16 42 H -0.01 -0.38 8.07 -2.39 -0.02 -0.40 16 43 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 44 H 0.05 1.90 6.94 -2.39 -0.02 1.89 16 45 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 Total: -1.00 -94.15 376.48 -0.73 -94.88 By element: Atomic # 1 Polarization: 0.98 SS G_CDS: 0.98 Total: 1.96 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: 7.06 Total: 8.48 kcal Atomic # 7 Polarization: -104.24 SS G_CDS: -4.47 Total: -108.71 kcal Atomic # 8 Polarization: -81.59 SS G_CDS: -6.11 Total: -87.70 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.23 kcal Atomic # 16 Polarization: 44.07 SS G_CDS: -0.22 Total: 43.85 kcal Total: -94.15 -0.73 -94.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732161490.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.850 kcal (2) G-P(sol) polarization free energy of solvation -94.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds