Wall clock time and date at job start Tue Mar 31 2020 18:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86805 * 120.00006 * 2 1 4 4 H 1.48507 * 109.47020 * 89.99544 * 3 2 1 5 5 H 1.48500 * 109.47015 * 209.99612 * 3 2 1 6 6 H 1.48497 * 109.47075 * 329.99504 * 3 2 1 7 7 C 1.38809 * 120.00245 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00306 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99883 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99861 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46756 * 186.25894 * 10 9 7 12 12 H 1.08998 * 109.87888 * 313.89713 * 11 10 9 13 13 C 1.54324 * 109.88132 * 192.88298 * 11 10 9 14 14 C 1.55149 * 102.94594 * 218.39142 * 13 11 10 15 15 C 1.54912 * 101.58111 * 35.49974 * 14 13 11 16 16 N 1.47026 * 109.88290 * 75.07896 * 11 10 9 17 17 C 1.34777 * 125.64516 * 298.31069 * 16 11 10 18 18 O 1.21635 * 119.99933 * 5.45032 * 17 16 11 19 19 C 1.47186 * 119.99492 * 185.45804 * 17 16 11 20 20 C 1.35624 * 123.19461 * 336.42156 * 19 17 16 21 21 S 1.70261 * 110.84411 * 179.86098 * 20 19 17 22 22 C 1.75594 * 92.62771 * 0.34554 * 21 20 19 23 23 C 1.34000 * 110.59750 * 359.80892 * 22 21 20 24 24 C 1.52020 * 123.46226 * 179.97438 * 23 22 21 25 25 C 1.53045 * 108.75344 * 342.85960 * 24 23 22 26 26 C 1.53150 * 109.20162 * 50.66761 * 25 24 23 27 27 C 1.51613 * 125.04913 * 179.80808 * 22 21 20 28 28 H 0.97001 * 120.00436 * 180.02562 * 1 2 3 29 29 H 0.97000 * 120.00093 * 0.02562 * 9 7 2 30 30 H 1.08997 * 109.47122 * 306.26261 * 10 9 7 31 31 H 1.08999 * 109.46682 * 66.26080 * 10 9 7 32 32 H 1.08998 * 110.72404 * 336.75900 * 13 11 10 33 33 H 1.09006 * 110.72033 * 100.02614 * 13 11 10 34 34 H 1.09000 * 111.00662 * 153.57863 * 14 13 11 35 35 H 1.09003 * 111.00416 * 277.39164 * 14 13 11 36 36 H 1.09005 * 110.36220 * 81.83403 * 15 14 13 37 37 H 1.09003 * 110.36919 * 204.04048 * 15 14 13 38 38 H 1.08002 * 124.57617 * 0.02562 * 20 19 17 39 39 H 1.08997 * 109.59170 * 102.64570 * 24 23 22 40 40 H 1.09002 * 109.58904 * 223.07781 * 24 23 22 41 41 H 1.08996 * 109.51128 * 170.58455 * 25 24 23 42 42 H 1.08993 * 109.51336 * 290.69118 * 25 24 23 43 43 H 1.08996 * 109.54744 * 49.49615 * 26 25 24 44 44 H 1.09003 * 109.54256 * 169.66427 * 26 25 24 45 45 H 1.09002 * 109.59391 * 43.63503 * 27 22 21 46 46 H 1.08996 * 109.59425 * 283.17706 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 1.4001 5 1 3.5477 1.4402 -0.7000 6 1 1.4476 2.6526 -0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0713 -4.8154 -0.1567 12 1 0.2235 -4.6737 0.5136 13 6 1.7751 -6.1512 0.1624 14 6 1.1705 -7.1218 -0.8862 15 6 1.0065 -6.1908 -2.1135 16 7 0.6049 -4.8895 -1.5491 17 6 -0.0775 -3.9274 -2.2011 18 8 -0.2708 -2.8513 -1.6681 19 6 -0.5891 -4.1791 -3.5580 20 6 -0.0594 -5.1095 -4.3906 21 16 -0.8928 -5.1388 -5.8750 22 6 -1.9855 -3.8568 -5.3792 23 6 -1.7027 -3.4519 -4.1336 24 6 -2.4691 -2.3530 -3.4151 25 6 -3.2581 -1.5465 -4.4492 26 6 -4.0613 -2.5070 -5.3310 27 6 -3.0973 -3.2812 -6.2343 28 1 -0.4851 -0.8400 0.0004 29 1 0.3555 -2.3881 -0.0002 30 1 2.7661 -3.6675 -0.8281 31 1 2.5980 -3.7645 0.9413 32 1 2.8530 -6.0610 0.0280 33 1 1.5378 -6.4800 1.1742 34 1 1.8582 -7.9387 -1.1047 35 1 0.2056 -7.5045 -0.5537 36 1 1.9521 -6.0971 -2.6476 37 1 0.2322 -6.5729 -2.7788 38 1 0.7763 -5.7477 -4.1441 39 1 -3.1571 -2.7975 -2.6959 40 1 -1.7689 -1.6976 -2.8972 41 1 -3.9389 -0.8660 -3.9378 42 1 -2.5675 -0.9737 -5.0681 43 1 -4.6117 -3.2061 -4.7016 44 1 -4.7615 -1.9397 -5.9443 45 1 -3.6320 -4.0904 -6.7318 46 1 -2.6741 -2.6074 -6.9792 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733352055.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:58 Heat of formation + Delta-G solvation = 22.551328 kcal Electronic energy + Delta-G solvation = -27793.075820 eV Core-core repulsion = 24195.778767 eV Total energy + Delta-G solvation = -3597.297053 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.19960 -38.66225 -36.85730 -35.14579 -34.20164 -31.57108 -31.20906 -30.63354 -29.08572 -28.25810 -25.35356 -24.27770 -23.26609 -22.82147 -22.08433 -21.30405 -20.57894 -18.81242 -18.20290 -17.11658 -16.98643 -16.34578 -16.23817 -15.14830 -14.65977 -14.45754 -14.18365 -13.97444 -13.70794 -13.61419 -13.44372 -13.23281 -13.05510 -13.00431 -12.78439 -12.61261 -12.45263 -12.04705 -11.90126 -11.53556 -11.44706 -11.37076 -11.02221 -10.82778 -10.73755 -10.63828 -10.55825 -10.51637 -10.27119 -10.24332 -9.84016 -9.10219 -8.79892 -8.59728 -8.50864 -8.24888 -8.11227 -6.56506 -5.75447 -2.69750 0.91371 1.58213 1.98717 2.22576 3.28593 3.64501 3.70999 3.72370 3.84796 4.49807 4.55342 4.65976 4.82871 4.89185 4.92587 4.92758 4.99057 5.14062 5.26268 5.30558 5.38468 5.41202 5.50707 5.57108 5.63435 5.67116 5.69834 5.79430 5.82618 5.89673 5.94686 5.95859 5.97625 6.03843 6.18707 6.19438 6.32874 6.36703 6.44645 6.48049 6.52629 6.80464 6.86126 6.98837 7.92664 8.08996 8.74986 9.18005 9.72413 10.54806 10.73498 11.75942 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.009226 B = 0.005224 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3034.337095 B = 5358.085466 C = 7699.766024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.043 4.043 3 Si 1.077 2.923 4 H -0.299 1.299 5 H -0.300 1.300 6 H -0.290 1.290 7 C -0.328 4.328 8 H 0.052 0.948 9 N -0.729 5.729 10 C 0.153 3.847 11 C 0.131 3.869 12 H 0.072 0.928 13 C -0.124 4.124 14 C -0.133 4.133 15 C 0.091 3.909 16 N -0.610 5.610 17 C 0.571 3.429 18 O -0.462 6.462 19 C -0.124 4.124 20 C -0.232 4.232 21 S 0.148 5.852 22 C -0.209 4.209 23 C -0.045 4.045 24 C -0.063 4.063 25 C -0.119 4.119 26 C -0.115 4.115 27 C -0.041 4.041 28 H 0.264 0.736 29 H 0.383 0.617 30 H 0.016 0.984 31 H 0.017 0.983 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.079 0.921 38 H 0.176 0.824 39 H 0.074 0.926 40 H 0.108 0.892 41 H 0.070 0.930 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.068 0.932 45 H 0.073 0.927 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.786 -17.043 -11.926 21.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.242 4.242 3 Si 0.910 3.090 4 H -0.227 1.227 5 H -0.227 1.227 6 H -0.216 1.216 7 C -0.459 4.459 8 H 0.070 0.930 9 N -0.382 5.382 10 C 0.023 3.977 11 C 0.028 3.972 12 H 0.090 0.910 13 C -0.162 4.162 14 C -0.171 4.171 15 C -0.033 4.033 16 N -0.347 5.347 17 C 0.357 3.643 18 O -0.333 6.333 19 C -0.142 4.142 20 C -0.369 4.369 21 S 0.417 5.583 22 C -0.325 4.325 23 C -0.056 4.056 24 C -0.102 4.102 25 C -0.157 4.157 26 C -0.154 4.154 27 C -0.080 4.080 28 H 0.076 0.924 29 H 0.225 0.775 30 H 0.034 0.966 31 H 0.034 0.966 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.193 0.807 39 H 0.092 0.908 40 H 0.126 0.874 41 H 0.089 0.911 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.087 0.913 45 H 0.092 0.908 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.719 -15.571 -13.024 20.841 hybrid contribution 0.321 -1.092 1.235 1.679 sum -4.397 -16.663 -11.789 20.880 Atomic orbital electron populations 1.70666 1.05858 1.29304 1.53061 1.25505 0.97247 1.00221 1.01185 0.83287 0.73805 0.76031 0.75884 1.22726 1.22677 1.21645 1.19956 0.91332 0.86425 1.48214 0.92972 1.42792 1.06141 0.99654 1.89587 1.20875 0.93050 0.86328 0.97422 1.21903 0.97416 0.95661 0.82270 0.90975 1.22633 1.00600 0.93563 0.99442 1.22780 1.01675 0.97342 0.95278 1.22586 0.99710 0.84187 0.96771 1.48290 1.56608 1.16363 1.13486 1.17345 0.78914 0.83532 0.84538 1.90873 1.54699 1.21521 1.66159 1.20214 0.98991 0.98797 0.96208 1.25854 1.06784 1.04792 0.99459 1.82652 1.25633 1.35251 1.14777 1.24580 1.04718 1.03969 0.99219 1.20465 0.94826 0.97352 0.92937 1.20649 0.98376 0.94634 0.96573 1.21577 0.98885 0.97681 0.97556 1.21589 0.97286 0.98396 0.98146 1.20274 0.92672 0.98865 0.96211 0.92366 0.77540 0.96574 0.96584 0.90349 0.90115 0.90088 0.90684 0.91749 0.90254 0.80668 0.90791 0.87404 0.91107 0.91637 0.91634 0.91336 0.90847 0.90455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -31.44 13.70 55.49 0.76 -30.68 16 2 C -0.04 -1.36 5.50 -17.44 -0.10 -1.45 16 3 Si 1.08 28.27 29.92 -169.99 -5.09 23.18 16 4 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 5 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 6 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 7 C -0.33 -10.21 9.99 -15.06 -0.15 -10.36 16 8 H 0.05 1.61 7.83 -52.49 -0.41 1.20 16 9 N -0.73 -20.51 4.12 -59.91 -0.25 -20.76 16 10 C 0.15 3.42 5.62 -4.04 -0.02 3.40 16 11 C 0.13 2.29 3.09 -66.95 -0.21 2.09 16 12 H 0.07 1.37 8.12 -51.93 -0.42 0.95 16 13 C -0.12 -1.51 6.45 -24.90 -0.16 -1.67 16 14 C -0.13 -1.30 7.08 -24.59 -0.17 -1.47 16 15 C 0.09 1.08 5.13 -2.53 -0.01 1.07 16 16 N -0.61 -10.39 3.06 -164.36 -0.50 -10.90 16 17 C 0.57 11.49 7.51 -12.63 -0.09 11.40 16 18 O -0.46 -11.51 10.66 5.25 0.06 -11.45 16 19 C -0.12 -2.11 5.83 -104.56 -0.61 -2.72 16 20 C -0.23 -3.12 8.88 29.80 0.26 -2.85 16 21 S 0.15 1.69 22.99 -107.50 -2.47 -0.78 16 22 C -0.21 -2.79 6.32 -35.35 -0.22 -3.01 16 23 C -0.04 -0.73 5.93 -102.82 -0.61 -1.34 16 24 C -0.06 -1.07 5.44 -27.21 -0.15 -1.22 16 25 C -0.12 -1.63 5.90 -26.63 -0.16 -1.78 16 26 C -0.12 -1.23 5.93 -26.59 -0.16 -1.39 16 27 C -0.04 -0.43 6.26 -27.37 -0.17 -0.60 16 28 H 0.26 8.88 6.53 -40.82 -0.27 8.61 16 29 H 0.38 11.23 3.87 -40.82 -0.16 11.07 16 30 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.02 0.37 8.09 -51.93 -0.42 -0.05 16 32 H 0.08 0.93 7.85 -51.93 -0.41 0.52 16 33 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.72 7.67 -51.93 -0.40 0.32 16 37 H 0.08 0.84 5.82 -51.93 -0.30 0.54 16 38 H 0.18 1.99 4.91 -52.49 -0.26 1.73 16 39 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.11 2.32 6.65 -51.93 -0.35 1.97 16 41 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.06 0.92 8.10 -51.93 -0.42 0.50 16 43 H 0.06 0.70 8.11 -51.93 -0.42 0.28 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 46 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 363.48 15.07 5.48 5.48 Total: -1.00 -37.22 363.48 -11.58 -48.80 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -6.83 Total: 9.05 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: -2.73 Total: -11.93 kcal Atomic # 7 Polarization: -62.34 SS G_CDS: 0.01 Total: -62.33 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: 0.06 Total: -11.45 kcal Atomic # 14 Polarization: 28.27 SS G_CDS: -5.09 Total: 23.18 kcal Atomic # 16 Polarization: 1.69 SS G_CDS: -2.47 Total: -0.78 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -37.22 -11.58 -48.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733352055.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.348 kcal (2) G-P(sol) polarization free energy of solvation -37.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds