Wall clock time and date at job start Tue Mar 31 2020 18:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86805 * 120.00006 * 2 1 4 4 H 1.48507 * 109.47020 * 89.99544 * 3 2 1 5 5 H 1.48500 * 109.47015 * 209.99612 * 3 2 1 6 6 H 1.48497 * 109.47075 * 329.99504 * 3 2 1 7 7 C 1.38809 * 120.00245 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00306 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99883 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99861 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46756 * 186.25894 * 10 9 7 12 12 H 1.08998 * 109.87888 * 313.89713 * 11 10 9 13 13 C 1.54324 * 109.88132 * 192.88298 * 11 10 9 14 14 C 1.55149 * 102.94594 * 218.39142 * 13 11 10 15 15 C 1.54912 * 101.58111 * 35.49974 * 14 13 11 16 16 N 1.47026 * 109.88290 * 75.07896 * 11 10 9 17 17 C 1.34777 * 125.64516 * 298.31069 * 16 11 10 18 18 O 1.21635 * 119.99933 * 5.45032 * 17 16 11 19 19 C 1.47186 * 119.99492 * 185.45804 * 17 16 11 20 20 C 1.35624 * 123.19461 * 336.42156 * 19 17 16 21 21 S 1.70261 * 110.84411 * 179.86098 * 20 19 17 22 22 C 1.75594 * 92.62771 * 0.34554 * 21 20 19 23 23 C 1.34000 * 110.59750 * 359.80892 * 22 21 20 24 24 C 1.52020 * 123.46226 * 179.97438 * 23 22 21 25 25 C 1.53045 * 108.75344 * 342.85960 * 24 23 22 26 26 C 1.53150 * 109.20162 * 50.66761 * 25 24 23 27 27 C 1.51613 * 125.04913 * 179.80808 * 22 21 20 28 28 H 0.97001 * 120.00436 * 180.02562 * 1 2 3 29 29 H 0.97000 * 120.00093 * 0.02562 * 9 7 2 30 30 H 1.08997 * 109.47122 * 306.26261 * 10 9 7 31 31 H 1.08999 * 109.46682 * 66.26080 * 10 9 7 32 32 H 1.08998 * 110.72404 * 336.75900 * 13 11 10 33 33 H 1.09006 * 110.72033 * 100.02614 * 13 11 10 34 34 H 1.09000 * 111.00662 * 153.57863 * 14 13 11 35 35 H 1.09003 * 111.00416 * 277.39164 * 14 13 11 36 36 H 1.09005 * 110.36220 * 81.83403 * 15 14 13 37 37 H 1.09003 * 110.36919 * 204.04048 * 15 14 13 38 38 H 1.08002 * 124.57617 * 0.02562 * 20 19 17 39 39 H 1.08997 * 109.59170 * 102.64570 * 24 23 22 40 40 H 1.09002 * 109.58904 * 223.07781 * 24 23 22 41 41 H 1.08996 * 109.51128 * 170.58455 * 25 24 23 42 42 H 1.08993 * 109.51336 * 290.69118 * 25 24 23 43 43 H 1.08996 * 109.54744 * 49.49615 * 26 25 24 44 44 H 1.09003 * 109.54256 * 169.66427 * 26 25 24 45 45 H 1.09002 * 109.59391 * 43.63503 * 27 22 21 46 46 H 1.08996 * 109.59425 * 283.17706 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 1.4001 5 1 3.5477 1.4402 -0.7000 6 1 1.4476 2.6526 -0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0713 -4.8154 -0.1567 12 1 0.2235 -4.6737 0.5136 13 6 1.7751 -6.1512 0.1624 14 6 1.1705 -7.1218 -0.8862 15 6 1.0065 -6.1908 -2.1135 16 7 0.6049 -4.8895 -1.5491 17 6 -0.0775 -3.9274 -2.2011 18 8 -0.2708 -2.8513 -1.6681 19 6 -0.5891 -4.1791 -3.5580 20 6 -0.0594 -5.1095 -4.3906 21 16 -0.8928 -5.1388 -5.8750 22 6 -1.9855 -3.8568 -5.3792 23 6 -1.7027 -3.4519 -4.1336 24 6 -2.4691 -2.3530 -3.4151 25 6 -3.2581 -1.5465 -4.4492 26 6 -4.0613 -2.5070 -5.3310 27 6 -3.0973 -3.2812 -6.2343 28 1 -0.4851 -0.8400 0.0004 29 1 0.3555 -2.3881 -0.0002 30 1 2.7661 -3.6675 -0.8281 31 1 2.5980 -3.7645 0.9413 32 1 2.8530 -6.0610 0.0280 33 1 1.5378 -6.4800 1.1742 34 1 1.8582 -7.9387 -1.1047 35 1 0.2056 -7.5045 -0.5537 36 1 1.9521 -6.0971 -2.6476 37 1 0.2322 -6.5729 -2.7788 38 1 0.7763 -5.7477 -4.1441 39 1 -3.1571 -2.7975 -2.6959 40 1 -1.7689 -1.6976 -2.8972 41 1 -3.9389 -0.8660 -3.9378 42 1 -2.5675 -0.9737 -5.0681 43 1 -4.6117 -3.2061 -4.7016 44 1 -4.7615 -1.9397 -5.9443 45 1 -3.6320 -4.0904 -6.7318 46 1 -2.6741 -2.6074 -6.9792 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733352055.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:57 Heat of formation + Delta-G solvation = -1.494984 kcal Electronic energy + Delta-G solvation = -27794.118546 eV Core-core repulsion = 24195.778767 eV Total energy + Delta-G solvation = -3598.339779 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.51108 -39.79028 -38.22469 -36.73959 -35.87201 -33.32609 -32.59734 -31.72989 -30.49796 -29.63430 -26.78191 -25.91653 -24.69017 -24.22520 -23.56377 -22.38214 -21.76918 -20.18854 -19.34536 -19.15027 -18.16998 -17.77963 -17.54362 -16.69360 -15.96380 -15.74342 -15.52350 -15.36611 -15.24062 -15.15199 -14.86111 -14.76833 -14.38294 -14.10267 -14.04729 -13.88173 -13.60578 -13.39490 -13.19844 -12.90788 -12.62417 -12.57413 -12.48595 -12.39108 -12.20434 -11.91295 -11.89700 -11.80412 -11.67648 -11.60225 -11.30460 -11.16560 -10.89365 -10.51683 -9.66703 -9.58405 -9.18681 -8.88085 -8.29184 -5.16102 -0.19730 0.57938 0.89919 0.98357 1.48814 1.63415 1.76800 2.01404 2.32763 2.72896 3.44971 3.50035 3.55599 3.61662 3.76511 3.88695 3.96045 3.96608 4.03773 4.15771 4.20364 4.24834 4.26838 4.37694 4.50124 4.52712 4.61329 4.65506 4.68578 4.71729 4.79343 4.88139 4.90692 4.93756 4.96292 5.03910 5.05355 5.08522 5.17648 5.29839 5.30585 5.37560 5.49561 5.58305 5.60447 6.58055 6.65269 7.17713 7.47424 8.25743 8.38071 9.24402 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.009226 B = 0.005224 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3034.337095 B = 5358.085466 C = 7699.766024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.106 4.106 3 Si 1.130 2.870 4 H -0.280 1.280 5 H -0.279 1.279 6 H -0.293 1.293 7 C -0.337 4.337 8 H 0.050 0.950 9 N -0.744 5.744 10 C 0.151 3.849 11 C 0.131 3.869 12 H 0.046 0.954 13 C -0.114 4.114 14 C -0.116 4.116 15 C 0.081 3.919 16 N -0.612 5.612 17 C 0.556 3.444 18 O -0.529 6.529 19 C -0.165 4.165 20 C -0.227 4.227 21 S 0.247 5.753 22 C -0.209 4.209 23 C -0.085 4.085 24 C -0.057 4.057 25 C -0.117 4.117 26 C -0.107 4.107 27 C -0.043 4.043 28 H 0.248 0.752 29 H 0.375 0.625 30 H 0.004 0.996 31 H 0.022 0.978 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.121 0.879 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.097 0.903 38 H 0.198 0.802 39 H 0.059 0.941 40 H 0.045 0.955 41 H 0.069 0.931 42 H 0.056 0.944 43 H 0.065 0.935 44 H 0.097 0.903 45 H 0.106 0.894 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.073 -20.283 -14.821 25.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.298 4.298 3 Si 0.955 3.045 4 H -0.207 1.207 5 H -0.205 1.205 6 H -0.220 1.220 7 C -0.469 4.469 8 H 0.068 0.932 9 N -0.396 5.396 10 C 0.022 3.978 11 C 0.027 3.973 12 H 0.065 0.935 13 C -0.152 4.152 14 C -0.154 4.154 15 C -0.041 4.041 16 N -0.347 5.347 17 C 0.344 3.656 18 O -0.405 6.405 19 C -0.183 4.183 20 C -0.364 4.364 21 S 0.516 5.484 22 C -0.325 4.325 23 C -0.095 4.095 24 C -0.097 4.097 25 C -0.154 4.154 26 C -0.146 4.146 27 C -0.082 4.082 28 H 0.058 0.942 29 H 0.215 0.785 30 H 0.022 0.978 31 H 0.039 0.961 32 H 0.105 0.895 33 H 0.117 0.883 34 H 0.139 0.861 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.115 0.885 38 H 0.215 0.785 39 H 0.078 0.922 40 H 0.064 0.936 41 H 0.087 0.913 42 H 0.075 0.925 43 H 0.084 0.916 44 H 0.115 0.885 45 H 0.124 0.876 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.969 -18.915 -15.925 25.042 hybrid contribution 0.143 -0.209 2.064 2.079 sum -3.826 -19.124 -13.861 23.927 Atomic orbital electron populations 1.70780 1.07021 1.28357 1.55471 1.27154 0.97321 1.04321 1.01017 0.82623 0.73218 0.71712 0.76914 1.20667 1.20519 1.21953 1.20326 0.91415 0.88049 1.47086 0.93190 1.43051 1.06103 1.00903 1.89533 1.21062 0.93792 0.86176 0.96722 1.21864 0.95760 0.96829 0.82823 0.93550 1.22634 1.00521 0.90638 1.01422 1.22809 1.02877 0.97041 0.92655 1.22969 1.00774 0.82028 0.98291 1.48433 1.55365 1.17690 1.13221 1.18079 0.78495 0.83195 0.85839 1.90836 1.57408 1.24326 1.67955 1.20074 1.01014 1.01644 0.95556 1.26194 1.06772 1.03251 1.00223 1.82304 1.22525 1.32136 1.11436 1.25086 1.05306 1.03971 0.98185 1.20401 0.96114 0.98396 0.94603 1.20383 0.97343 0.94733 0.97206 1.21559 0.98690 0.98028 0.97134 1.21556 0.97278 0.97874 0.97893 1.20478 0.91889 0.99994 0.95821 0.94183 0.78530 0.97841 0.96051 0.89497 0.88317 0.86088 0.89952 0.90329 0.88458 0.78485 0.92223 0.93625 0.91277 0.92471 0.91632 0.88464 0.87621 0.89122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -68.88 13.70 21.65 0.30 -68.58 16 2 C -0.11 -7.03 5.50 84.86 0.47 -6.57 16 3 Si 1.13 58.91 29.92 68.60 2.05 60.96 16 4 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 5 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 6 H -0.29 -15.30 7.11 99.48 0.71 -14.59 16 7 C -0.34 -22.08 9.99 84.03 0.84 -21.24 16 8 H 0.05 3.21 7.83 -2.91 -0.02 3.18 16 9 N -0.74 -44.89 4.12 -343.46 -1.41 -46.30 16 10 C 0.15 7.10 5.62 86.38 0.49 7.58 16 11 C 0.13 4.78 3.09 45.34 0.14 4.92 16 12 H 0.05 1.91 8.12 -2.39 -0.02 1.89 16 13 C -0.11 -2.56 6.45 31.78 0.20 -2.35 16 14 C -0.12 -1.85 7.08 31.98 0.23 -1.62 16 15 C 0.08 1.74 5.13 86.86 0.45 2.18 16 16 N -0.61 -21.48 3.06 -792.15 -2.43 -23.90 16 17 C 0.56 24.14 7.51 86.59 0.65 24.79 16 18 O -0.53 -29.45 10.66 -4.14 -0.04 -29.50 16 19 C -0.16 -5.80 5.83 -19.82 -0.12 -5.91 16 20 C -0.23 -5.66 8.88 67.21 0.60 -5.07 16 21 S 0.25 4.68 22.99 -56.49 -1.30 3.38 16 22 C -0.21 -5.22 6.32 25.01 0.16 -5.06 16 23 C -0.08 -2.89 5.93 -18.70 -0.11 -3.00 16 24 C -0.06 -2.19 5.44 30.29 0.16 -2.02 16 25 C -0.12 -3.39 5.90 30.66 0.18 -3.21 16 26 C -0.11 -2.14 5.93 30.68 0.18 -1.96 16 27 C -0.04 -0.77 6.26 30.18 0.19 -0.59 16 28 H 0.25 18.14 6.53 -92.71 -0.61 17.54 16 29 H 0.37 24.05 3.87 -92.71 -0.36 23.69 16 30 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 31 H 0.02 1.00 8.09 -2.39 -0.02 0.98 16 32 H 0.09 1.84 7.85 -2.39 -0.02 1.82 16 33 H 0.10 1.90 8.14 -2.38 -0.02 1.88 16 34 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.08 1.50 7.67 -2.38 -0.02 1.49 16 37 H 0.10 1.76 5.82 -2.39 -0.01 1.75 16 38 H 0.20 3.84 4.91 -2.91 -0.01 3.82 16 39 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.05 2.29 6.65 -2.39 -0.02 2.27 16 41 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.06 1.72 8.10 -2.39 -0.02 1.70 16 43 H 0.06 1.33 8.11 -2.39 -0.02 1.31 16 44 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 46 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -91.94 363.48 2.67 -89.27 By element: Atomic # 1 Polarization: 33.01 SS G_CDS: 0.80 Total: 33.81 kcal Atomic # 6 Polarization: -23.84 SS G_CDS: 4.71 Total: -19.13 kcal Atomic # 7 Polarization: -135.24 SS G_CDS: -3.54 Total: -138.79 kcal Atomic # 8 Polarization: -29.45 SS G_CDS: -0.04 Total: -29.50 kcal Atomic # 14 Polarization: 58.91 SS G_CDS: 2.05 Total: 60.96 kcal Atomic # 16 Polarization: 4.68 SS G_CDS: -1.30 Total: 3.38 kcal Total: -91.94 2.67 -89.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733352055.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.776 kcal (2) G-P(sol) polarization free energy of solvation -91.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds