Wall clock time and date at job start Tue Mar 31 2020 18:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 119.99954 * 2 1 4 4 H 1.48498 * 109.46949 * 240.00027 * 3 2 1 5 5 H 1.48492 * 109.47049 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46810 * 120.00194 * 3 2 1 7 7 C 1.38814 * 119.99933 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99996 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99745 * 359.97438 * 7 2 1 10 10 C 1.46505 * 119.99848 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.47065 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.51316 * 60.10649 * 11 10 9 13 13 C 1.53713 * 109.48245 * 180.36427 * 11 10 9 14 14 N 1.47158 * 108.16129 * 172.40188 * 13 11 10 15 15 C 1.34773 * 120.98049 * 129.43295 * 14 13 11 16 16 O 1.21270 * 120.00296 * 359.71628 * 15 14 13 17 17 C 1.50702 * 119.99546 * 179.71878 * 15 14 13 18 18 H 1.09000 * 112.83328 * 308.38104 * 17 15 14 19 19 C 1.52256 * 113.66350 * 177.19306 * 17 15 14 20 20 C 1.50569 * 87.24232 * 245.40198 * 19 17 15 21 21 C 1.38821 * 147.27171 * 179.97438 * 20 19 17 22 22 C 1.38032 * 120.12189 * 180.02562 * 21 20 19 23 23 C 1.38460 * 119.95584 * 0.24038 * 22 21 20 24 24 F 1.35101 * 120.03376 * 179.74785 * 23 22 21 25 25 C 1.38295 * 119.92529 * 359.50077 * 23 22 21 26 26 C 1.37740 * 92.75684 * 359.97438 * 20 19 17 27 27 C 1.47153 * 118.03286 * 309.15469 * 14 13 11 28 28 C 1.53302 * 108.38456 * 50.79061 * 27 14 13 29 29 O 1.42962 * 109.22116 * 307.69509 * 28 27 14 30 30 H 0.97000 * 120.00090 * 359.97438 * 1 2 3 31 31 H 0.96998 * 120.00174 * 0.02562 * 9 7 2 32 32 H 1.08999 * 109.46915 * 60.00243 * 10 9 7 33 33 H 1.08998 * 109.47006 * 300.00602 * 10 9 7 34 34 H 1.09000 * 109.83771 * 52.72034 * 13 11 10 35 35 H 1.09001 * 109.74423 * 292.02345 * 13 11 10 36 36 H 1.08998 * 113.58879 * 130.80917 * 19 17 15 37 37 H 1.09005 * 113.58522 * 359.97438 * 19 17 15 38 38 H 1.07998 * 119.94187 * 0.02562 * 21 20 19 39 39 H 1.08002 * 120.01853 * 179.97438 * 22 21 20 40 40 H 1.07991 * 119.96085 * 180.27819 * 25 23 22 41 41 H 1.08999 * 109.67810 * 170.50652 * 27 14 13 42 42 H 1.08998 * 109.68088 * 291.03051 * 27 14 13 43 43 H 1.09001 * 109.51670 * 67.61426 * 28 27 14 44 44 H 1.08996 * 109.51344 * 187.77391 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6569 -0.0005 11 6 1.0637 -4.8197 -0.0012 12 1 0.4383 -4.7635 -0.8921 13 6 1.8319 -6.1511 0.0080 14 7 0.8597 -7.2404 0.1921 15 6 0.8489 -8.3071 -0.6315 16 8 1.6449 -8.3770 -1.5438 17 6 -0.1524 -9.4130 -0.4188 18 1 -0.1575 -9.7879 0.6048 19 6 -0.0813 -10.5123 -1.4698 20 6 -1.4602 -10.0886 -1.9014 21 6 -2.5275 -10.2920 -2.7654 22 6 -3.6539 -9.4994 -2.6735 23 6 -3.7176 -8.4963 -1.7213 24 9 -4.8172 -7.7163 -1.6334 25 6 -2.6566 -8.2970 -0.8570 26 6 -1.5248 -9.0945 -0.9501 27 6 -0.0961 -7.1334 1.3058 28 6 -0.7670 -5.7566 1.2366 29 8 0.2408 -4.7451 1.1655 30 1 -0.4850 0.8400 0.0004 31 1 0.3555 -2.3881 -0.0005 32 1 2.6846 -3.7146 0.8895 33 1 2.6847 -3.7146 -0.8905 34 1 2.5505 -6.1579 0.8277 35 1 2.3541 -6.2814 -0.9398 36 1 -0.0456 -11.5170 -1.0485 37 1 0.6839 -10.3426 -2.2273 38 1 -2.4766 -11.0718 -3.5108 39 1 -4.4831 -9.6589 -3.3468 40 1 -2.7075 -7.5177 -0.1112 41 1 -0.8512 -7.9144 1.2177 42 1 0.4316 -7.2380 2.2538 43 1 -1.3990 -5.7037 0.3501 44 1 -1.3750 -5.6027 2.1280 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733741624.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:21 Heat of formation + Delta-G solvation = -34.100054 kcal Electronic energy + Delta-G solvation = -28752.225337 eV Core-core repulsion = 24586.258519 eV Total energy + Delta-G solvation = -4165.966817 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.16523 -41.65220 -39.81185 -38.28018 -35.45891 -35.12897 -34.41065 -32.25834 -31.24401 -30.20131 -28.64223 -27.67488 -26.29566 -24.76646 -23.54092 -23.06212 -22.22475 -21.16941 -20.76134 -19.18197 -18.02322 -17.54715 -17.07056 -16.93924 -16.50096 -16.11309 -15.82967 -15.54601 -15.46408 -15.18853 -14.83279 -14.50545 -14.38161 -14.08782 -13.91903 -13.55463 -13.20310 -13.13570 -12.91647 -12.61757 -12.55478 -12.32397 -12.12564 -12.01815 -11.68298 -11.60735 -11.08366 -11.02000 -10.89512 -10.76787 -10.53610 -10.20224 -10.01784 -9.92471 -9.67230 -9.33206 -8.84660 -8.84339 -8.61205 -6.87778 -5.71007 -2.99906 0.69266 0.78496 2.26848 2.63962 3.14408 3.47719 3.50363 3.51508 3.52926 3.83162 3.90427 3.98973 4.14068 4.20835 4.55413 4.57754 4.69546 4.70652 4.83926 4.89396 5.01708 5.07087 5.10637 5.22246 5.27512 5.33969 5.41228 5.52876 5.61086 5.61676 5.63945 5.65526 5.71660 5.79806 5.84808 5.92764 6.18507 6.22855 6.28427 6.47065 6.55549 6.68979 7.11956 7.42891 7.72828 7.87760 8.46995 9.58640 10.15733 10.51792 11.51674 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.015123 B = 0.002815 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.086627 B = 9946.065069 C =10983.156200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.726 5.726 10 C 0.164 3.836 11 C 0.074 3.926 12 H 0.063 0.937 13 C 0.085 3.915 14 N -0.608 5.608 15 C 0.533 3.467 16 O -0.531 6.531 17 C -0.066 4.066 18 H 0.125 0.875 19 C -0.056 4.056 20 C -0.125 4.125 21 C -0.067 4.067 22 C -0.143 4.143 23 C 0.102 3.898 24 F -0.134 7.134 25 C -0.121 4.121 26 C -0.100 4.100 27 C 0.069 3.931 28 C 0.045 3.955 29 O -0.354 6.354 30 H 0.255 0.745 31 H 0.388 0.612 32 H 0.029 0.971 33 H 0.036 0.964 34 H 0.080 0.920 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.113 0.887 38 H 0.133 0.867 39 H 0.141 0.859 40 H 0.134 0.866 41 H 0.090 0.910 42 H 0.082 0.918 43 H 0.053 0.947 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.951 -26.792 -0.183 27.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.372 4.372 8 H 0.088 0.912 9 N -0.370 5.370 10 C 0.035 3.965 11 C 0.015 3.985 12 H 0.081 0.919 13 C -0.038 4.038 14 N -0.341 5.341 15 C 0.320 3.680 16 O -0.407 6.407 17 C -0.087 4.087 18 H 0.143 0.857 19 C -0.093 4.093 20 C -0.125 4.125 21 C -0.085 4.085 22 C -0.162 4.162 23 C 0.083 3.917 24 F -0.113 7.113 25 C -0.140 4.140 26 C -0.101 4.101 27 C -0.054 4.054 28 C -0.033 4.033 29 O -0.272 6.272 30 H 0.065 0.935 31 H 0.222 0.778 32 H 0.047 0.953 33 H 0.053 0.947 34 H 0.099 0.901 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.131 0.869 38 H 0.151 0.849 39 H 0.159 0.841 40 H 0.152 0.848 41 H 0.108 0.892 42 H 0.100 0.900 43 H 0.071 0.929 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -5.424 -26.511 -0.533 27.065 hybrid contribution -0.354 0.986 0.012 1.048 sum -5.778 -25.525 -0.521 26.176 Atomic orbital electron populations 1.69666 1.05114 1.25684 1.57546 1.24744 0.95520 0.97661 1.02994 0.86253 0.78494 0.83517 0.77828 1.21273 1.21706 1.21269 1.19182 0.90981 0.84099 1.42923 0.91197 1.42203 1.06057 0.99421 1.89346 1.20623 0.92338 0.84712 0.98790 1.22888 0.92926 0.94213 0.88496 0.91914 1.22479 0.91406 0.85566 1.04307 1.48110 1.34972 1.20721 1.30308 1.19957 0.84140 0.82383 0.81507 1.90702 1.40607 1.78234 1.31192 1.21190 0.89644 0.95358 1.02479 0.85685 1.21445 0.92993 0.97911 0.96949 1.21860 0.96568 0.98030 0.96064 1.20244 0.90983 0.99100 0.98150 1.21049 0.99815 0.95989 0.99358 1.17324 0.84217 0.92306 0.97892 1.91539 1.50984 1.73127 1.95616 1.20370 0.91932 1.01080 1.00627 1.21088 0.93763 0.96754 0.98455 1.22579 0.92898 0.99790 0.90108 1.22931 0.90979 0.86592 1.02839 1.88178 1.45894 1.50410 1.42736 0.93505 0.77821 0.95347 0.94694 0.90141 0.87953 0.88067 0.86886 0.84941 0.84103 0.84768 0.89207 0.90002 0.92893 0.87635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.89 13.06 55.49 0.72 -28.16 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.82 29.55 -169.99 -5.02 17.80 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.73 -19.14 5.50 -59.91 -0.33 -19.47 16 10 C 0.16 3.39 5.96 -4.04 -0.02 3.36 16 11 C 0.07 1.27 2.88 -26.36 -0.08 1.19 16 12 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 13 C 0.08 1.20 5.96 -3.31 -0.02 1.18 16 14 N -0.61 -7.45 3.01 -172.01 -0.52 -7.96 16 15 C 0.53 6.60 7.24 -10.99 -0.08 6.52 16 16 O -0.53 -8.32 15.17 5.57 0.08 -8.23 16 17 C -0.07 -0.57 2.90 -93.65 -0.27 -0.84 16 18 H 0.13 0.74 7.71 -51.93 -0.40 0.34 16 19 C -0.06 -0.44 7.69 -28.62 -0.22 -0.66 16 20 C -0.12 -1.12 7.42 -104.94 -0.78 -1.90 16 21 C -0.07 -0.53 10.06 -39.44 -0.40 -0.93 16 22 C -0.14 -1.22 10.02 -39.58 -0.40 -1.62 16 23 C 0.10 1.05 7.30 -39.48 -0.29 0.76 16 24 F -0.13 -1.53 17.27 2.25 0.04 -1.49 16 25 C -0.12 -1.22 9.80 -39.36 -0.39 -1.60 16 26 C -0.10 -0.96 6.20 -104.96 -0.65 -1.61 16 27 C 0.07 0.68 6.49 -3.53 -0.02 0.65 16 28 C 0.04 0.55 6.99 37.31 0.26 0.81 16 29 O -0.35 -6.17 10.13 -35.23 -0.36 -6.53 16 30 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 31 H 0.39 10.89 7.54 -40.82 -0.31 10.58 16 32 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.10 1.52 7.08 -51.93 -0.37 1.15 16 36 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.11 1.05 7.02 -51.93 -0.36 0.68 16 38 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 39 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 40 H 0.13 1.22 7.37 -52.49 -0.39 0.84 16 41 H 0.09 0.65 5.14 -51.93 -0.27 0.39 16 42 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.05 0.67 7.70 -51.93 -0.40 0.27 16 44 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 366.21 15.07 5.52 5.52 Total: -1.00 -35.00 366.21 -9.30 -44.30 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -5.85 Total: 6.46 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: -3.60 Total: -2.23 kcal Atomic # 7 Polarization: -55.47 SS G_CDS: -0.12 Total: -55.60 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -0.27 Total: -14.76 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.00 -9.30 -44.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733741624.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.201 kcal (2) G-P(sol) polarization free energy of solvation -34.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds