Wall clock time and date at job start Tue Mar 31 2020 18:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 119.99954 * 2 1 4 4 H 1.48498 * 109.46949 * 240.00027 * 3 2 1 5 5 H 1.48492 * 109.47049 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46810 * 120.00194 * 3 2 1 7 7 C 1.38814 * 119.99933 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99996 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99745 * 359.97438 * 7 2 1 10 10 C 1.46505 * 119.99848 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.47065 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.51316 * 60.10649 * 11 10 9 13 13 C 1.53713 * 109.48245 * 180.36427 * 11 10 9 14 14 N 1.47158 * 108.16129 * 172.40188 * 13 11 10 15 15 C 1.34773 * 120.98049 * 129.43295 * 14 13 11 16 16 O 1.21270 * 120.00296 * 359.71628 * 15 14 13 17 17 C 1.50702 * 119.99546 * 179.71878 * 15 14 13 18 18 H 1.09000 * 112.83328 * 308.38104 * 17 15 14 19 19 C 1.52256 * 113.66350 * 177.19306 * 17 15 14 20 20 C 1.50569 * 87.24232 * 245.40198 * 19 17 15 21 21 C 1.38821 * 147.27171 * 179.97438 * 20 19 17 22 22 C 1.38032 * 120.12189 * 180.02562 * 21 20 19 23 23 C 1.38460 * 119.95584 * 0.24038 * 22 21 20 24 24 F 1.35101 * 120.03376 * 179.74785 * 23 22 21 25 25 C 1.38295 * 119.92529 * 359.50077 * 23 22 21 26 26 C 1.37740 * 92.75684 * 359.97438 * 20 19 17 27 27 C 1.47153 * 118.03286 * 309.15469 * 14 13 11 28 28 C 1.53302 * 108.38456 * 50.79061 * 27 14 13 29 29 O 1.42962 * 109.22116 * 307.69509 * 28 27 14 30 30 H 0.97000 * 120.00090 * 359.97438 * 1 2 3 31 31 H 0.96998 * 120.00174 * 0.02562 * 9 7 2 32 32 H 1.08999 * 109.46915 * 60.00243 * 10 9 7 33 33 H 1.08998 * 109.47006 * 300.00602 * 10 9 7 34 34 H 1.09000 * 109.83771 * 52.72034 * 13 11 10 35 35 H 1.09001 * 109.74423 * 292.02345 * 13 11 10 36 36 H 1.08998 * 113.58879 * 130.80917 * 19 17 15 37 37 H 1.09005 * 113.58522 * 359.97438 * 19 17 15 38 38 H 1.07998 * 119.94187 * 0.02562 * 21 20 19 39 39 H 1.08002 * 120.01853 * 179.97438 * 22 21 20 40 40 H 1.07991 * 119.96085 * 180.27819 * 25 23 22 41 41 H 1.08999 * 109.67810 * 170.50652 * 27 14 13 42 42 H 1.08998 * 109.68088 * 291.03051 * 27 14 13 43 43 H 1.09001 * 109.51670 * 67.61426 * 28 27 14 44 44 H 1.08996 * 109.51344 * 187.77391 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6569 -0.0005 11 6 1.0637 -4.8197 -0.0012 12 1 0.4383 -4.7635 -0.8921 13 6 1.8319 -6.1511 0.0080 14 7 0.8597 -7.2404 0.1921 15 6 0.8489 -8.3071 -0.6315 16 8 1.6449 -8.3770 -1.5438 17 6 -0.1524 -9.4130 -0.4188 18 1 -0.1575 -9.7879 0.6048 19 6 -0.0813 -10.5123 -1.4698 20 6 -1.4602 -10.0886 -1.9014 21 6 -2.5275 -10.2920 -2.7654 22 6 -3.6539 -9.4994 -2.6735 23 6 -3.7176 -8.4963 -1.7213 24 9 -4.8172 -7.7163 -1.6334 25 6 -2.6566 -8.2970 -0.8570 26 6 -1.5248 -9.0945 -0.9501 27 6 -0.0961 -7.1334 1.3058 28 6 -0.7670 -5.7566 1.2366 29 8 0.2408 -4.7451 1.1655 30 1 -0.4850 0.8400 0.0004 31 1 0.3555 -2.3881 -0.0005 32 1 2.6846 -3.7146 0.8895 33 1 2.6847 -3.7146 -0.8905 34 1 2.5505 -6.1579 0.8277 35 1 2.3541 -6.2814 -0.9398 36 1 -0.0456 -11.5170 -1.0485 37 1 0.6839 -10.3426 -2.2273 38 1 -2.4766 -11.0718 -3.5108 39 1 -4.4831 -9.6589 -3.3468 40 1 -2.7075 -7.5177 -0.1112 41 1 -0.8512 -7.9144 1.2177 42 1 0.4316 -7.2380 2.2538 43 1 -1.3990 -5.7037 0.3501 44 1 -1.3750 -5.6027 2.1280 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733741624.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:20 Heat of formation + Delta-G solvation = -56.791271 kcal Electronic energy + Delta-G solvation = -28753.209302 eV Core-core repulsion = 24586.258519 eV Total energy + Delta-G solvation = -4166.950782 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.97001 -42.43018 -40.80541 -39.37833 -36.70056 -36.16451 -35.81572 -33.94748 -32.13216 -31.71491 -29.63186 -28.67741 -27.51034 -25.92592 -24.86960 -24.13857 -23.37286 -22.34521 -21.74442 -20.07224 -19.27161 -18.82946 -18.26655 -17.83299 -17.59043 -17.16278 -16.76367 -16.60804 -16.50680 -16.22208 -16.11242 -15.88269 -15.41141 -15.14945 -15.04533 -14.65055 -14.49228 -14.42530 -14.07610 -13.93862 -13.56924 -13.42490 -13.09799 -12.84768 -12.77581 -12.72922 -12.63085 -12.32835 -12.31333 -12.10340 -11.90660 -11.77553 -11.64215 -11.23054 -11.04496 -10.95771 -10.02882 -9.69628 -9.54426 -9.02423 -7.94726 -5.24751 0.00265 0.10213 1.34400 1.46733 1.50927 1.56867 1.70148 2.45841 2.55823 2.70456 2.79208 3.17824 3.28690 3.38670 3.43121 3.47843 3.55210 3.85581 3.88498 3.91848 4.02347 4.11152 4.16382 4.26321 4.30948 4.38889 4.44071 4.46601 4.59008 4.62257 4.69400 4.79969 4.83211 4.91075 4.92591 4.99901 5.04557 5.06176 5.15026 5.21660 5.46978 5.52359 5.80261 6.17624 6.19277 6.26528 6.92217 7.32315 8.06151 8.30960 9.28793 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.015123 B = 0.002815 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.086627 B = 9946.065069 C =10983.156200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.077 4.077 3 Si 0.978 3.022 4 H -0.276 1.276 5 H -0.295 1.295 6 H -0.276 1.276 7 C -0.250 4.250 8 H 0.079 0.921 9 N -0.741 5.741 10 C 0.160 3.840 11 C 0.087 3.913 12 H 0.042 0.958 13 C 0.095 3.905 14 N -0.610 5.610 15 C 0.529 3.471 16 O -0.569 6.569 17 C -0.058 4.058 18 H 0.162 0.838 19 C -0.049 4.049 20 C -0.130 4.130 21 C -0.068 4.068 22 C -0.142 4.142 23 C 0.076 3.924 24 F -0.147 7.147 25 C -0.133 4.133 26 C -0.114 4.114 27 C 0.076 3.924 28 C 0.036 3.964 29 O -0.385 6.385 30 H 0.251 0.749 31 H 0.375 0.625 32 H 0.033 0.967 33 H 0.042 0.958 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.136 0.864 37 H 0.097 0.903 38 H 0.160 0.840 39 H 0.160 0.840 40 H 0.136 0.864 41 H 0.120 0.880 42 H 0.101 0.899 43 H 0.044 0.956 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.433 -28.945 0.449 29.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.269 4.269 3 Si 0.807 3.193 4 H -0.202 1.202 5 H -0.221 1.221 6 H -0.202 1.202 7 C -0.381 4.381 8 H 0.097 0.903 9 N -0.384 5.384 10 C 0.033 3.967 11 C 0.028 3.972 12 H 0.060 0.940 13 C -0.028 4.028 14 N -0.342 5.342 15 C 0.318 3.682 16 O -0.448 6.448 17 C -0.079 4.079 18 H 0.179 0.821 19 C -0.086 4.086 20 C -0.131 4.131 21 C -0.085 4.085 22 C -0.161 4.161 23 C 0.057 3.943 24 F -0.126 7.126 25 C -0.151 4.151 26 C -0.114 4.114 27 C -0.046 4.046 28 C -0.041 4.041 29 O -0.303 6.303 30 H 0.060 0.940 31 H 0.206 0.794 32 H 0.051 0.949 33 H 0.060 0.940 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.154 0.846 37 H 0.115 0.885 38 H 0.178 0.822 39 H 0.178 0.822 40 H 0.154 0.846 41 H 0.138 0.862 42 H 0.119 0.881 43 H 0.062 0.938 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.887 -28.707 0.116 29.120 hybrid contribution -0.544 1.586 -0.204 1.689 sum -5.431 -27.121 -0.089 27.659 Atomic orbital electron populations 1.69841 1.06766 1.26168 1.59266 1.25639 0.96440 1.01306 1.03490 0.85146 0.77147 0.78762 0.78292 1.20236 1.22097 1.20196 1.19645 0.91614 0.85222 1.41650 0.90329 1.42406 1.05682 1.00863 1.89400 1.20776 0.93043 0.83910 0.98949 1.22546 0.92246 0.94466 0.87922 0.94000 1.22196 0.91537 0.84700 1.04376 1.48205 1.34894 1.20123 1.31012 1.20630 0.84189 0.82856 0.80525 1.90685 1.42360 1.79128 1.32658 1.21287 0.87640 0.94096 1.04849 0.82106 1.21491 0.91563 0.99317 0.96229 1.22185 0.97246 0.97828 0.95804 1.20576 0.90290 0.99362 0.98311 1.21338 1.00681 0.95170 0.98891 1.17640 0.84263 0.93264 0.99175 1.91501 1.51629 1.73649 1.95810 1.20481 0.92304 1.01424 1.00925 1.21212 0.93897 0.97101 0.99231 1.22696 0.93111 0.98799 0.89985 1.23227 0.90240 0.87084 1.03542 1.88111 1.47049 1.52828 1.42349 0.94001 0.79365 0.94883 0.94019 0.88864 0.88891 0.84625 0.88480 0.82220 0.82212 0.84602 0.86219 0.88091 0.93767 0.85433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.48 13.06 21.65 0.28 -61.20 16 2 C -0.08 -4.55 5.50 84.86 0.47 -4.08 16 3 Si 0.98 47.25 29.55 68.60 2.03 49.28 16 4 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 5 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 6 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 7 C -0.25 -14.50 9.99 84.03 0.84 -13.66 16 8 H 0.08 4.32 7.83 -2.91 -0.02 4.29 16 9 N -0.74 -39.98 5.50 -343.45 -1.89 -41.87 16 10 C 0.16 6.73 5.96 86.38 0.51 7.24 16 11 C 0.09 3.05 2.88 30.83 0.09 3.14 16 12 H 0.04 1.61 8.14 -2.39 -0.02 1.60 16 13 C 0.10 2.66 5.96 86.49 0.52 3.17 16 14 N -0.61 -14.07 3.01 -816.52 -2.46 -16.53 16 15 C 0.53 12.32 7.24 87.66 0.63 12.95 16 16 O -0.57 -17.56 15.17 -3.00 -0.05 -17.61 16 17 C -0.06 -0.85 2.90 -12.76 -0.04 -0.89 16 18 H 0.16 1.19 7.71 -2.39 -0.02 1.17 16 19 C -0.05 -0.63 7.69 29.37 0.23 -0.41 16 20 C -0.13 -2.03 7.42 -20.07 -0.15 -2.18 16 21 C -0.07 -0.92 10.06 22.36 0.22 -0.70 16 22 C -0.14 -2.22 10.02 22.27 0.22 -2.00 16 23 C 0.08 1.53 7.30 22.34 0.16 1.69 16 24 F -0.15 -3.41 17.27 44.97 0.78 -2.63 16 25 C -0.13 -2.56 9.80 22.41 0.22 -2.34 16 26 C -0.11 -1.97 6.20 -20.09 -0.12 -2.09 16 27 C 0.08 1.30 6.49 86.36 0.56 1.86 16 28 C 0.04 0.86 6.99 72.08 0.50 1.36 16 29 O -0.38 -13.45 10.13 -148.98 -1.51 -14.96 16 30 H 0.25 15.39 8.31 -92.71 -0.77 14.62 16 31 H 0.37 21.82 7.54 -92.71 -0.70 21.12 16 32 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 35 H 0.09 2.77 7.08 -2.39 -0.02 2.76 16 36 H 0.14 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.10 1.64 7.02 -2.38 -0.02 1.62 16 38 H 0.16 1.24 8.06 -2.91 -0.02 1.22 16 39 H 0.16 1.76 8.06 -2.91 -0.02 1.74 16 40 H 0.14 2.42 7.37 -2.92 -0.02 2.40 16 41 H 0.12 1.36 5.14 -2.39 -0.01 1.34 16 42 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.04 1.12 7.70 -2.39 -0.02 1.10 16 44 H 0.13 2.43 8.14 -2.39 -0.02 2.41 16 Total: -1.00 -77.62 366.21 2.39 -75.23 By element: Atomic # 1 Polarization: 26.88 SS G_CDS: 0.34 Total: 27.22 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: 4.87 Total: 3.08 kcal Atomic # 7 Polarization: -115.53 SS G_CDS: -4.07 Total: -119.60 kcal Atomic # 8 Polarization: -31.01 SS G_CDS: -1.55 Total: -32.57 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.78 Total: -2.63 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 2.03 Total: 49.28 kcal Total: -77.62 2.39 -75.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733741624.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.438 kcal (2) G-P(sol) polarization free energy of solvation -77.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds