Wall clock time and date at job start Tue Mar 31 2020 18:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86807 * 120.00080 * 2 1 4 4 H 1.48497 * 109.46665 * 269.99876 * 3 2 1 5 5 H 1.48503 * 109.46995 * 29.99500 * 3 2 1 6 6 H 1.48496 * 109.47047 * 149.99373 * 3 2 1 7 7 C 1.38812 * 120.00033 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00336 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00118 * 359.97438 * 7 2 1 10 10 C 1.46498 * 120.00181 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47075 * 180.02562 * 10 9 7 12 12 C 1.53788 * 113.61488 * 184.99950 * 11 10 9 13 13 C 1.53777 * 87.08071 * 220.02673 * 12 11 10 14 14 N 1.46498 * 113.61439 * 139.98778 * 13 12 11 15 15 C 1.34779 * 120.00347 * 156.52442 * 14 13 12 16 16 O 1.21705 * 119.99727 * 0.02562 * 15 14 13 17 17 C 1.46578 * 119.99994 * 179.97438 * 15 14 13 18 18 C 1.36115 * 125.45301 * 180.02562 * 17 15 14 19 19 C 1.38278 * 114.10030 * 180.02562 * 18 17 15 20 20 C 1.35243 * 113.92465 * 0.02562 * 19 18 17 21 21 S 1.70755 * 111.11009 * 359.97438 * 20 19 18 22 22 C 1.51711 * 124.33215 * 179.97438 * 20 19 18 23 23 C 1.53089 * 108.75462 * 343.44449 * 22 20 19 24 24 C 1.53146 * 108.98751 * 50.09512 * 23 22 20 25 25 C 1.52330 * 123.08457 * 179.97438 * 19 18 17 26 26 C 1.53771 * 87.17792 * 25.39071 * 13 12 11 27 27 H 0.96994 * 119.99670 * 0.02562 * 1 2 3 28 28 H 0.96996 * 119.99641 * 0.02562 * 9 7 2 29 29 H 1.09005 * 109.46856 * 60.00694 * 10 9 7 30 30 H 1.08991 * 109.47268 * 300.00885 * 10 9 7 31 31 H 1.08996 * 112.85531 * 316.20138 * 11 10 9 32 32 H 1.09004 * 113.60874 * 105.47189 * 12 11 10 33 33 H 1.08999 * 113.68722 * 334.58542 * 12 11 10 34 34 H 1.09009 * 113.60924 * 270.79739 * 13 12 11 35 35 H 0.97001 * 119.99654 * 336.51822 * 14 13 12 36 36 H 1.07999 * 122.95571 * 359.76792 * 18 17 15 37 37 H 1.09004 * 109.58910 * 103.23156 * 22 20 19 38 38 H 1.09001 * 109.58996 * 223.66006 * 22 20 19 39 39 H 1.09005 * 109.55044 * 169.94446 * 23 22 20 40 40 H 1.09000 * 109.55315 * 290.24145 * 23 22 20 41 41 H 1.09000 * 109.51107 * 49.06738 * 24 23 22 42 42 H 1.08996 * 109.51048 * 169.16978 * 24 23 22 43 43 H 1.09001 * 109.57915 * 42.88132 * 25 19 18 44 44 H 1.09000 * 109.69009 * 282.54669 * 25 19 18 45 45 H 1.08997 * 113.61727 * 89.15554 * 26 13 12 46 46 H 1.08998 * 113.61679 * 220.06156 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6528 0.7000 6 1 3.5477 1.4402 0.7002 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 2.0581 -3.6568 0.0016 11 6 1.0639 -4.8197 0.0022 12 6 1.7305 -6.2001 0.1251 13 6 0.7047 -6.7000 -0.9057 14 7 1.2668 -7.6268 -1.8912 15 6 0.4622 -8.4951 -2.5354 16 8 -0.7316 -8.5090 -2.2988 17 6 1.0246 -9.4220 -3.5219 18 6 0.3175 -10.3410 -4.2347 19 6 1.0858 -11.0956 -5.1021 20 6 2.4014 -10.7827 -5.0834 21 16 2.7188 -9.5254 -3.9724 22 6 3.4547 -11.4617 -5.9385 23 6 2.8805 -12.7751 -6.4761 24 6 1.5112 -12.5000 -7.1045 25 6 0.5043 -12.1822 -5.9975 26 6 0.6140 -5.2489 -1.4062 27 1 -0.4849 0.8400 -0.0004 28 1 0.3556 -2.3880 0.0016 29 1 2.6854 -3.7141 0.8912 30 1 2.6841 -3.7149 -0.8887 31 1 0.2380 -4.6702 0.6977 32 1 1.6169 -6.6537 1.1097 33 1 2.7588 -6.2234 -0.2356 34 1 -0.2198 -7.0665 -0.4592 35 1 2.2182 -7.6154 -2.0801 36 1 -0.7492 -10.4723 -4.1291 37 1 3.7235 -10.8121 -6.7716 38 1 4.3379 -11.6691 -5.3344 39 1 3.5522 -13.1852 -7.2303 40 1 2.7701 -13.4869 -5.6581 41 1 1.5864 -11.6509 -7.7839 42 1 1.1807 -13.3798 -7.6565 43 1 -0.4270 -11.8302 -6.4412 44 1 0.3123 -13.0793 -5.4089 45 1 1.3363 -5.0103 -2.1868 46 1 -0.3997 -4.9357 -1.6562 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733956876.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:23 Heat of formation + Delta-G solvation = 4.378297 kcal Electronic energy + Delta-G solvation = -25004.149179 eV Core-core repulsion = 21406.064084 eV Total energy + Delta-G solvation = -3598.085095 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.23295 -39.50699 -38.25660 -35.32961 -34.55718 -33.32527 -31.37771 -30.89259 -29.55014 -26.85166 -25.50778 -24.89607 -24.19612 -23.19227 -22.04820 -20.95365 -20.58475 -19.55672 -18.62592 -18.10268 -17.02842 -16.44861 -16.18124 -15.47303 -15.21065 -15.13064 -14.81093 -14.57859 -14.33678 -14.28502 -13.60428 -13.30714 -13.20126 -13.15097 -13.07876 -12.97121 -12.85584 -12.27999 -11.92025 -11.75653 -11.61798 -11.52249 -11.36043 -11.16055 -11.11408 -10.84052 -10.83843 -10.72004 -10.34221 -10.12689 -10.08648 -9.84513 -9.61271 -9.11507 -8.90224 -8.82398 -8.65725 -6.87641 -5.73009 -3.01429 0.23192 1.13436 1.57381 2.03144 3.02023 3.06012 3.45424 3.50125 3.52188 4.13875 4.30365 4.38834 4.54802 4.60253 4.66622 4.68673 4.77825 4.83294 4.99043 5.03074 5.04799 5.12723 5.15241 5.27234 5.32693 5.44451 5.50360 5.58861 5.60352 5.65773 5.74020 5.81724 5.84089 5.92401 5.96114 6.05978 6.10644 6.13376 6.24685 6.29104 6.44273 6.61785 6.80282 6.94170 7.35883 7.72358 8.04294 8.46062 9.56943 10.16332 10.50821 11.49896 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.023440 B = 0.001873 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.273311 B =14942.409388 C =15354.026305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.069 0.931 9 N -0.732 5.732 10 C 0.165 3.835 11 C -0.110 4.110 12 C -0.137 4.137 13 C 0.119 3.881 14 N -0.713 5.713 15 C 0.590 3.410 16 O -0.530 6.530 17 C -0.264 4.264 18 C -0.050 4.050 19 C -0.118 4.118 20 C -0.196 4.196 21 S 0.195 5.805 22 C -0.050 4.050 23 C -0.115 4.115 24 C -0.121 4.121 25 C -0.056 4.056 26 C -0.138 4.138 27 H 0.255 0.745 28 H 0.384 0.616 29 H 0.019 0.981 30 H 0.018 0.982 31 H 0.094 0.906 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.115 0.885 35 H 0.397 0.603 36 H 0.151 0.849 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.084 0.916 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.554 -30.256 -12.718 33.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.371 4.371 8 H 0.087 0.913 9 N -0.376 5.376 10 C 0.038 3.962 11 C -0.129 4.129 12 C -0.176 4.176 13 C 0.015 3.985 14 N -0.363 5.363 15 C 0.376 3.624 16 O -0.409 6.409 17 C -0.384 4.384 18 C -0.083 4.083 19 C -0.131 4.131 20 C -0.315 4.315 21 S 0.466 5.534 22 C -0.089 4.089 23 C -0.154 4.154 24 C -0.158 4.158 25 C -0.096 4.096 26 C -0.177 4.177 27 H 0.065 0.935 28 H 0.218 0.782 29 H 0.037 0.963 30 H 0.036 0.964 31 H 0.112 0.888 32 H 0.092 0.908 33 H 0.103 0.897 34 H 0.133 0.867 35 H 0.231 0.769 36 H 0.168 0.832 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.096 0.904 44 H 0.095 0.905 45 H 0.102 0.898 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.161 -29.318 -12.039 32.492 hybrid contribution -0.677 0.307 -0.552 0.926 sum 6.483 -29.010 -12.592 32.283 Atomic orbital electron populations 1.69663 1.05091 1.25591 1.57822 1.24751 0.95533 0.97689 1.03155 0.86189 0.78623 0.83899 0.77479 1.21772 1.21779 1.20802 1.19237 0.91003 0.84266 1.42548 0.91255 1.42354 1.05910 0.99950 1.89379 1.20595 0.92866 0.85147 0.97608 1.22565 0.99473 0.93806 0.97061 1.23342 0.98643 0.96788 0.98812 1.22743 0.98381 0.88157 0.89246 1.45937 1.10923 1.37198 1.42199 1.16972 0.86186 0.79390 0.79829 1.90833 1.14618 1.70435 1.64984 1.24335 0.97874 1.07482 1.08709 1.20608 1.01460 0.92863 0.93408 1.19501 0.91843 1.00918 1.00835 1.24631 0.98871 1.03382 1.04644 1.82914 1.05340 1.31306 1.33879 1.20403 0.94716 0.96253 0.97544 1.21562 0.96858 0.96383 1.00607 1.21560 0.94792 1.01916 0.97582 1.20543 0.98212 0.95739 0.95061 1.23488 1.02675 0.93770 0.97788 0.93543 0.78233 0.96307 0.96386 0.88751 0.90824 0.89672 0.86717 0.76898 0.83152 0.89890 0.90228 0.91003 0.91359 0.91498 0.91209 0.90416 0.90470 0.89761 0.90951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.73 13.06 55.49 0.72 -28.00 16 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 3 Si 0.91 22.71 29.55 -169.99 -5.02 17.68 16 4 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 8 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 9 N -0.73 -18.87 5.60 -59.91 -0.34 -19.21 16 10 C 0.17 3.32 6.10 -4.04 -0.02 3.30 16 11 C -0.11 -1.76 3.75 -89.71 -0.34 -2.10 16 12 C -0.14 -1.70 7.39 -25.92 -0.19 -1.89 16 13 C 0.12 1.57 4.21 -67.13 -0.28 1.29 16 14 N -0.71 -8.62 5.36 -54.36 -0.29 -8.91 16 15 C 0.59 8.15 7.78 -12.90 -0.10 8.05 16 16 O -0.53 -9.18 16.45 5.18 0.09 -9.09 16 17 C -0.26 -3.01 6.43 -36.98 -0.24 -3.25 16 18 C -0.05 -0.53 9.80 -40.33 -0.40 -0.93 16 19 C -0.12 -1.03 5.75 -104.86 -0.60 -1.63 16 20 C -0.20 -1.58 6.15 -34.88 -0.21 -1.79 16 21 S 0.20 1.66 22.09 -107.50 -2.37 -0.72 16 22 C -0.05 -0.28 6.22 -27.34 -0.17 -0.45 16 23 C -0.12 -0.54 5.93 -26.61 -0.16 -0.69 16 24 C -0.12 -0.60 5.89 -26.66 -0.16 -0.76 16 25 C -0.06 -0.35 6.13 -27.08 -0.17 -0.52 16 26 C -0.14 -2.13 7.45 -25.83 -0.19 -2.32 16 27 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 28 H 0.38 10.44 7.67 -40.82 -0.31 10.13 16 29 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.02 0.37 7.85 -51.93 -0.41 -0.04 16 31 H 0.09 1.58 8.14 -51.93 -0.42 1.15 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.08 0.95 8.07 -51.93 -0.42 0.53 16 34 H 0.11 1.64 7.50 -51.92 -0.39 1.25 16 35 H 0.40 3.90 7.82 -40.82 -0.32 3.58 16 36 H 0.15 1.57 8.05 -52.49 -0.42 1.15 16 37 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 40 H 0.07 0.33 8.10 -51.93 -0.42 -0.09 16 41 H 0.07 0.36 8.10 -51.93 -0.42 -0.06 16 42 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 43 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.08 1.31 7.90 -51.93 -0.41 0.90 16 46 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 386.52 15.07 5.82 5.82 Total: -1.00 -33.66 386.52 -12.16 -45.83 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -7.30 Total: 7.80 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: -3.48 Total: -11.21 kcal Atomic # 7 Polarization: -56.22 SS G_CDS: 0.10 Total: -56.12 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.09 Total: -9.09 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.68 kcal Atomic # 16 Polarization: 1.66 SS G_CDS: -2.37 Total: -0.72 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.66 -12.16 -45.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733956876.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.206 kcal (2) G-P(sol) polarization free energy of solvation -33.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds