Wall clock time and date at job start Tue Mar 31 2020 18:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86807 * 120.00080 * 2 1 4 4 H 1.48497 * 109.46665 * 269.99876 * 3 2 1 5 5 H 1.48503 * 109.46995 * 29.99500 * 3 2 1 6 6 H 1.48496 * 109.47047 * 149.99373 * 3 2 1 7 7 C 1.38812 * 120.00033 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00336 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00118 * 359.97438 * 7 2 1 10 10 C 1.46498 * 120.00181 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47075 * 180.02562 * 10 9 7 12 12 C 1.53788 * 113.61488 * 184.99950 * 11 10 9 13 13 C 1.53777 * 87.08071 * 220.02673 * 12 11 10 14 14 N 1.46498 * 113.61439 * 139.98778 * 13 12 11 15 15 C 1.34779 * 120.00347 * 156.52442 * 14 13 12 16 16 O 1.21705 * 119.99727 * 0.02562 * 15 14 13 17 17 C 1.46578 * 119.99994 * 179.97438 * 15 14 13 18 18 C 1.36115 * 125.45301 * 180.02562 * 17 15 14 19 19 C 1.38278 * 114.10030 * 180.02562 * 18 17 15 20 20 C 1.35243 * 113.92465 * 0.02562 * 19 18 17 21 21 S 1.70755 * 111.11009 * 359.97438 * 20 19 18 22 22 C 1.51711 * 124.33215 * 179.97438 * 20 19 18 23 23 C 1.53089 * 108.75462 * 343.44449 * 22 20 19 24 24 C 1.53146 * 108.98751 * 50.09512 * 23 22 20 25 25 C 1.52330 * 123.08457 * 179.97438 * 19 18 17 26 26 C 1.53771 * 87.17792 * 25.39071 * 13 12 11 27 27 H 0.96994 * 119.99670 * 0.02562 * 1 2 3 28 28 H 0.96996 * 119.99641 * 0.02562 * 9 7 2 29 29 H 1.09005 * 109.46856 * 60.00694 * 10 9 7 30 30 H 1.08991 * 109.47268 * 300.00885 * 10 9 7 31 31 H 1.08996 * 112.85531 * 316.20138 * 11 10 9 32 32 H 1.09004 * 113.60874 * 105.47189 * 12 11 10 33 33 H 1.08999 * 113.68722 * 334.58542 * 12 11 10 34 34 H 1.09009 * 113.60924 * 270.79739 * 13 12 11 35 35 H 0.97001 * 119.99654 * 336.51822 * 14 13 12 36 36 H 1.07999 * 122.95571 * 359.76792 * 18 17 15 37 37 H 1.09004 * 109.58910 * 103.23156 * 22 20 19 38 38 H 1.09001 * 109.58996 * 223.66006 * 22 20 19 39 39 H 1.09005 * 109.55044 * 169.94446 * 23 22 20 40 40 H 1.09000 * 109.55315 * 290.24145 * 23 22 20 41 41 H 1.09000 * 109.51107 * 49.06738 * 24 23 22 42 42 H 1.08996 * 109.51048 * 169.16978 * 24 23 22 43 43 H 1.09001 * 109.57915 * 42.88132 * 25 19 18 44 44 H 1.09000 * 109.69009 * 282.54669 * 25 19 18 45 45 H 1.08997 * 113.61727 * 89.15554 * 26 13 12 46 46 H 1.08998 * 113.61679 * 220.06156 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6528 0.7000 6 1 3.5477 1.4402 0.7002 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 2.0581 -3.6568 0.0016 11 6 1.0639 -4.8197 0.0022 12 6 1.7305 -6.2001 0.1251 13 6 0.7047 -6.7000 -0.9057 14 7 1.2668 -7.6268 -1.8912 15 6 0.4622 -8.4951 -2.5354 16 8 -0.7316 -8.5090 -2.2988 17 6 1.0246 -9.4220 -3.5219 18 6 0.3175 -10.3410 -4.2347 19 6 1.0858 -11.0956 -5.1021 20 6 2.4014 -10.7827 -5.0834 21 16 2.7188 -9.5254 -3.9724 22 6 3.4547 -11.4617 -5.9385 23 6 2.8805 -12.7751 -6.4761 24 6 1.5112 -12.5000 -7.1045 25 6 0.5043 -12.1822 -5.9975 26 6 0.6140 -5.2489 -1.4062 27 1 -0.4849 0.8400 -0.0004 28 1 0.3556 -2.3880 0.0016 29 1 2.6854 -3.7141 0.8912 30 1 2.6841 -3.7149 -0.8887 31 1 0.2380 -4.6702 0.6977 32 1 1.6169 -6.6537 1.1097 33 1 2.7588 -6.2234 -0.2356 34 1 -0.2198 -7.0665 -0.4592 35 1 2.2182 -7.6154 -2.0801 36 1 -0.7492 -10.4723 -4.1291 37 1 3.7235 -10.8121 -6.7716 38 1 4.3379 -11.6691 -5.3344 39 1 3.5522 -13.1852 -7.2303 40 1 2.7701 -13.4869 -5.6581 41 1 1.5864 -11.6509 -7.7839 42 1 1.1807 -13.3798 -7.6565 43 1 -0.4270 -11.8302 -6.4412 44 1 0.3123 -13.0793 -5.4089 45 1 1.3363 -5.0103 -2.1868 46 1 -0.3997 -4.9357 -1.6562 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733956876.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:23 Heat of formation + Delta-G solvation = -15.832145 kcal Electronic energy + Delta-G solvation = -25005.025570 eV Core-core repulsion = 21406.064084 eV Total energy + Delta-G solvation = -3598.961485 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.30022 -40.22701 -39.38242 -36.37180 -35.91386 -34.69826 -32.84683 -31.84531 -30.32282 -28.46110 -26.67917 -25.97220 -24.89070 -24.62233 -23.09910 -22.03322 -21.50087 -20.68561 -19.46618 -19.08023 -18.78955 -17.43706 -17.15523 -16.66710 -16.27692 -16.19190 -15.98969 -15.58421 -15.40217 -15.15191 -14.87439 -14.73551 -14.62914 -14.09593 -13.74797 -13.65585 -13.48581 -13.40601 -13.27814 -13.05496 -12.95458 -12.74829 -12.41495 -12.25834 -12.16731 -12.09442 -11.87131 -11.73334 -11.53047 -11.42529 -11.35738 -11.31472 -11.15647 -10.88238 -10.19747 -9.64213 -9.32657 -8.98261 -7.94606 -5.23470 -0.55072 0.41788 0.86523 1.26104 1.46790 1.49112 1.57586 2.02054 2.07560 2.56397 3.38000 3.50492 3.57102 3.61401 3.70605 3.85176 3.88431 3.93441 4.02430 4.12002 4.25704 4.29396 4.42471 4.52122 4.61556 4.63376 4.65823 4.76652 4.78670 4.85781 4.86736 4.93424 4.95987 5.01719 5.03769 5.06292 5.13115 5.20610 5.23050 5.36735 5.37183 5.45988 5.48985 5.51080 5.59053 6.27672 6.36866 7.02450 7.33404 8.11490 8.33514 9.29134 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.023440 B = 0.001873 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.273311 B =14942.409388 C =15354.026305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.080 4.080 3 Si 0.976 3.024 4 H -0.287 1.287 5 H -0.296 1.296 6 H -0.267 1.267 7 C -0.245 4.245 8 H 0.078 0.922 9 N -0.747 5.747 10 C 0.164 3.836 11 C -0.111 4.111 12 C -0.113 4.113 13 C 0.128 3.872 14 N -0.702 5.702 15 C 0.588 3.412 16 O -0.577 6.577 17 C -0.300 4.300 18 C -0.054 4.054 19 C -0.133 4.133 20 C -0.190 4.190 21 S 0.234 5.766 22 C -0.053 4.053 23 C -0.114 4.114 24 C -0.120 4.120 25 C -0.058 4.058 26 C -0.141 4.141 27 H 0.250 0.750 28 H 0.372 0.628 29 H 0.025 0.975 30 H 0.024 0.976 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.410 0.590 36 H 0.141 0.859 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.084 0.916 43 H 0.077 0.923 44 H 0.083 0.917 45 H 0.084 0.916 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.463 -31.921 -13.627 35.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.272 4.272 3 Si 0.805 3.195 4 H -0.214 1.214 5 H -0.223 1.223 6 H -0.192 1.192 7 C -0.377 4.377 8 H 0.096 0.904 9 N -0.389 5.389 10 C 0.038 3.962 11 C -0.130 4.130 12 C -0.152 4.152 13 C 0.023 3.977 14 N -0.352 5.352 15 C 0.376 3.624 16 O -0.458 6.458 17 C -0.420 4.420 18 C -0.088 4.088 19 C -0.145 4.145 20 C -0.310 4.310 21 S 0.505 5.495 22 C -0.092 4.092 23 C -0.152 4.152 24 C -0.157 4.157 25 C -0.097 4.097 26 C -0.180 4.180 27 H 0.059 0.941 28 H 0.204 0.796 29 H 0.043 0.957 30 H 0.042 0.958 31 H 0.102 0.898 32 H 0.111 0.889 33 H 0.125 0.875 34 H 0.122 0.878 35 H 0.247 0.753 36 H 0.159 0.841 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.108 0.892 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.103 0.897 43 H 0.096 0.904 44 H 0.101 0.899 45 H 0.103 0.897 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 10.146 -31.016 -12.949 35.109 hybrid contribution -1.531 0.739 -0.332 1.732 sum 8.615 -30.277 -13.281 34.166 Atomic orbital electron populations 1.69833 1.06719 1.26027 1.59648 1.25628 0.96436 1.01308 1.03852 0.85102 0.77726 0.79295 0.77417 1.21432 1.22258 1.19194 1.19684 0.91589 0.85429 1.40995 0.90444 1.42615 1.05636 1.01366 1.89331 1.20779 0.93481 0.84180 0.97754 1.22457 0.98896 0.94396 0.97298 1.23245 0.99034 0.93335 0.99545 1.22488 0.98645 0.87044 0.89505 1.45790 1.11475 1.36388 1.41558 1.17329 0.85704 0.79519 0.79846 1.90799 1.16556 1.71887 1.66599 1.24190 1.00158 1.08164 1.09519 1.20759 1.01397 0.93015 0.93676 1.19698 0.92072 1.01574 1.01111 1.25118 0.99369 1.02543 1.03928 1.82672 1.02485 1.31046 1.33347 1.20597 0.94334 0.96696 0.97616 1.21583 0.96847 0.95789 1.01017 1.21572 0.94717 1.02390 0.97029 1.20624 0.98626 0.95166 0.95241 1.23487 1.01428 0.95561 0.97546 0.94084 0.79629 0.95731 0.95796 0.89784 0.88876 0.87538 0.87824 0.75340 0.84128 0.88856 0.88827 0.89173 0.91480 0.91909 0.89737 0.90427 0.89857 0.89742 0.93063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.01 13.06 21.65 0.28 -60.72 16 2 C -0.08 -4.71 5.50 84.86 0.47 -4.25 16 3 Si 0.98 46.81 29.55 68.60 2.03 48.84 16 4 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 5 H -0.30 -14.29 7.11 99.48 0.71 -13.59 16 6 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 7 C -0.25 -13.95 9.99 84.03 0.84 -13.11 16 8 H 0.08 4.19 7.83 -2.91 -0.02 4.16 16 9 N -0.75 -38.87 5.60 -343.46 -1.92 -40.80 16 10 C 0.16 6.47 6.10 86.38 0.53 7.00 16 11 C -0.11 -3.52 3.75 -10.20 -0.04 -3.55 16 12 C -0.11 -2.56 7.39 31.12 0.23 -2.33 16 13 C 0.13 3.33 4.21 45.51 0.19 3.52 16 14 N -0.70 -16.52 5.36 -444.10 -2.38 -18.90 16 15 C 0.59 16.53 7.78 86.42 0.67 17.20 16 16 O -0.58 -20.91 16.45 -4.36 -0.07 -20.98 16 17 C -0.30 -6.84 6.43 23.95 0.15 -6.69 16 18 C -0.05 -1.17 9.80 21.78 0.21 -0.96 16 19 C -0.13 -2.18 5.75 -20.02 -0.12 -2.30 16 20 C -0.19 -2.69 6.15 25.32 0.16 -2.53 16 21 S 0.23 3.57 22.09 -56.49 -1.25 2.32 16 22 C -0.05 -0.44 6.22 30.20 0.19 -0.25 16 23 C -0.11 -0.72 5.93 30.67 0.18 -0.54 16 24 C -0.12 -0.92 5.89 30.64 0.18 -0.74 16 25 C -0.06 -0.65 6.13 30.37 0.19 -0.46 16 26 C -0.14 -4.40 7.45 31.18 0.23 -4.16 16 27 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 28 H 0.37 20.82 7.67 -92.71 -0.71 20.11 16 29 H 0.02 0.96 8.14 -2.38 -0.02 0.94 16 30 H 0.02 0.93 7.85 -2.39 -0.02 0.91 16 31 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 32 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.11 2.00 8.07 -2.39 -0.02 1.99 16 34 H 0.10 3.01 7.50 -2.38 -0.02 2.99 16 35 H 0.41 7.35 7.82 -92.71 -0.73 6.63 16 36 H 0.14 3.16 8.05 -2.91 -0.02 3.14 16 37 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.09 0.28 8.14 -2.38 -0.02 0.26 16 40 H 0.07 0.47 8.10 -2.39 -0.02 0.45 16 41 H 0.06 0.55 8.10 -2.39 -0.02 0.53 16 42 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 43 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.08 2.61 7.90 -2.39 -0.02 2.59 16 46 H 0.05 1.78 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -73.86 386.52 0.51 -73.35 By element: Atomic # 1 Polarization: 31.47 SS G_CDS: -0.44 Total: 31.03 kcal Atomic # 6 Polarization: -18.40 SS G_CDS: 4.27 Total: -14.14 kcal Atomic # 7 Polarization: -116.40 SS G_CDS: -4.02 Total: -120.42 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: -0.07 Total: -20.98 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.84 kcal Atomic # 16 Polarization: 3.57 SS G_CDS: -1.25 Total: 2.32 kcal Total: -73.86 0.51 -73.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733956876.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.517 kcal (2) G-P(sol) polarization free energy of solvation -73.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds