Wall clock time and date at job start Tue Mar 31 2020 18:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00208 * 2 1 4 4 H 1.48503 * 109.47007 * 239.99698 * 3 2 1 5 5 H 1.48498 * 109.46900 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47279 * 119.99702 * 3 2 1 7 7 C 1.38817 * 120.00031 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99840 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99555 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99919 * 173.69068 * 9 7 2 11 11 C 1.52999 * 112.84679 * 294.88213 * 10 9 7 12 12 N 1.46502 * 109.47239 * 292.10939 * 11 10 9 13 13 C 1.34775 * 120.00117 * 180.85529 * 12 11 10 14 14 O 1.21643 * 120.00207 * 0.02562 * 13 12 11 15 15 C 1.47191 * 120.00071 * 179.97438 * 13 12 11 16 16 C 1.35624 * 123.18841 * 0.03094 * 15 13 12 17 17 S 1.70264 * 110.84054 * 180.25083 * 16 15 13 18 18 C 1.75590 * 92.62800 * 359.64887 * 17 16 15 19 19 C 1.34009 * 110.60112 * 0.34402 * 18 17 16 20 20 C 1.52013 * 123.46296 * 179.75373 * 19 18 17 21 21 C 1.53035 * 108.76438 * 342.88558 * 20 19 18 22 22 C 1.53158 * 109.21382 * 50.63212 * 21 20 19 23 23 C 1.51612 * 125.04809 * 180.09148 * 18 17 16 24 24 C 1.53777 * 113.61695 * 66.07802 * 10 9 7 25 25 C 1.53950 * 87.02045 * 89.23283 * 24 10 9 26 26 C 1.53777 * 87.11282 * 25.35999 * 25 24 10 27 27 H 0.97005 * 119.99668 * 0.02562 * 1 2 3 28 28 H 0.97007 * 120.00213 * 353.68349 * 9 7 2 29 29 H 1.08999 * 109.47220 * 172.11014 * 11 10 9 30 30 H 1.09002 * 109.47058 * 52.10945 * 11 10 9 31 31 H 0.97001 * 119.99614 * 0.85570 * 12 11 10 32 32 H 1.08003 * 124.57845 * 359.97438 * 16 15 13 33 33 H 1.08995 * 109.59086 * 102.65593 * 20 19 18 34 34 H 1.09003 * 109.58566 * 223.08998 * 20 19 18 35 35 H 1.08998 * 109.50742 * 290.71666 * 21 20 19 36 36 H 1.08991 * 109.51614 * 170.55857 * 21 20 19 37 37 H 1.09000 * 109.53938 * 169.76679 * 22 21 20 38 38 H 1.08996 * 109.53933 * 49.50849 * 22 21 20 39 39 H 1.09000 * 109.59548 * 283.42299 * 23 18 17 40 40 H 1.08999 * 109.59780 * 43.88827 * 23 18 17 41 41 H 1.09004 * 113.61638 * 203.75348 * 24 10 9 42 42 H 1.09007 * 113.61512 * 334.65214 * 24 10 9 43 43 H 1.09007 * 113.53567 * 270.81276 * 25 24 10 44 44 H 1.08999 * 113.66612 * 139.93705 * 25 24 10 45 45 H 1.08999 * 113.62176 * 220.09019 * 26 25 24 46 46 H 1.09003 * 113.61023 * 89.18921 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0513 -3.6530 -0.1383 11 6 2.7366 -3.7984 -1.4985 12 7 1.7206 -3.9312 -2.5456 13 6 2.0941 -4.0899 -3.8308 14 8 3.2748 -4.1233 -4.1214 15 6 1.0733 -4.2239 -4.8827 16 6 -0.2593 -4.1963 -4.6319 17 16 -1.1504 -4.3851 -6.0703 18 6 0.3019 -4.4957 -7.0509 19 6 1.3969 -4.3972 -6.2846 20 6 2.8129 -4.4614 -6.8338 21 6 2.7690 -5.0660 -8.2389 22 6 1.7203 -4.3251 -9.0739 23 6 0.3246 -4.6829 -8.5552 24 6 2.9719 -3.9689 1.0522 25 6 1.7640 -4.6737 1.6959 26 6 1.2264 -4.8847 0.2707 27 1 -0.4850 0.8401 -0.0004 28 1 0.3598 -2.3905 0.0926 29 1 3.3707 -4.6850 -1.4930 30 1 3.3468 -2.9166 -1.6941 31 1 0.7791 -3.9050 -2.3138 32 1 -0.6961 -4.0756 -3.6515 33 1 3.2322 -3.4565 -6.8815 34 1 3.4281 -5.0860 -6.1860 35 1 2.5029 -6.1210 -8.1731 36 1 3.7468 -4.9650 -8.7095 37 1 1.8086 -4.6237 -10.1185 38 1 1.8774 -3.2501 -8.9860 39 1 0.0996 -5.7214 -8.7979 40 1 -0.4154 -4.0287 -9.0162 41 1 3.7904 -4.6447 0.8040 42 1 3.3026 -3.0836 1.5955 43 1 1.1459 -4.0114 2.3021 44 1 2.0203 -5.6013 2.2077 45 1 0.1498 -4.7377 0.1838 46 1 1.5667 -5.8113 -0.1916 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754991830.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:35 Heat of formation + Delta-G solvation = 7.914200 kcal Electronic energy + Delta-G solvation = -26703.955712 eV Core-core repulsion = 23106.023946 eV Total energy + Delta-G solvation = -3597.931767 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.90024 -38.91623 -37.91780 -34.95298 -33.84419 -33.26831 -30.82318 -30.10522 -29.25445 -27.19537 -25.31401 -24.58424 -23.69760 -23.34377 -22.14406 -21.36973 -19.62399 -18.35916 -18.15646 -17.55544 -17.07296 -16.67357 -15.50782 -15.08413 -14.90440 -14.49532 -14.42507 -14.35441 -14.09252 -13.86672 -13.64516 -13.27583 -13.10873 -13.03242 -12.68621 -12.60137 -12.20269 -12.03715 -11.78740 -11.55210 -11.43753 -11.23177 -11.01996 -10.94431 -10.83996 -10.76586 -10.41478 -10.38607 -10.26561 -10.11323 -9.74043 -9.52573 -9.41173 -8.88453 -8.64117 -8.50448 -8.20096 -7.05822 -5.83953 -3.13630 0.85253 1.53513 1.96043 2.08646 3.41777 3.46446 3.47788 3.61481 3.73353 4.48439 4.53219 4.72131 4.76743 4.89761 5.09317 5.17095 5.19434 5.22953 5.26793 5.36129 5.41708 5.45344 5.49880 5.52732 5.55347 5.68415 5.77127 5.82116 5.85540 5.98353 6.03640 6.09473 6.13019 6.17982 6.22067 6.26813 6.30462 6.38250 6.53020 6.61987 6.70866 6.89839 6.96813 7.06349 7.68514 8.00471 8.34882 8.65883 9.46184 9.99359 10.34683 11.38073 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.012068 B = 0.003383 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2319.705205 B = 8274.036384 C = 8930.315196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.007 4.007 3 Si 0.904 3.096 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.700 5.700 10 C 0.173 3.827 11 C 0.121 3.879 12 N -0.699 5.699 13 C 0.570 3.430 14 O -0.547 6.547 15 C -0.142 4.142 16 C -0.209 4.209 17 S 0.171 5.829 18 C -0.215 4.215 19 C -0.050 4.050 20 C -0.053 4.053 21 C -0.121 4.121 22 C -0.117 4.117 23 C -0.041 4.041 24 C -0.150 4.150 25 C -0.128 4.128 26 C -0.145 4.145 27 H 0.256 0.744 28 H 0.386 0.614 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.398 0.602 32 H 0.171 0.829 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.081 0.919 44 H 0.054 0.946 45 H 0.064 0.936 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.354 -13.397 -13.540 19.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.203 4.203 3 Si 0.735 3.265 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.368 4.368 8 H 0.088 0.912 9 N -0.340 5.340 10 C 0.080 3.920 11 C -0.005 4.005 12 N -0.347 5.347 13 C 0.355 3.645 14 O -0.426 6.426 15 C -0.159 4.159 16 C -0.347 4.347 17 S 0.440 5.560 18 C -0.331 4.331 19 C -0.061 4.061 20 C -0.092 4.092 21 C -0.159 4.159 22 C -0.156 4.156 23 C -0.080 4.080 24 C -0.191 4.191 25 C -0.165 4.165 26 C -0.183 4.183 27 H 0.065 0.935 28 H 0.220 0.780 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.232 0.768 32 H 0.188 0.812 33 H 0.097 0.903 34 H 0.109 0.891 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.093 0.907 43 H 0.099 0.901 44 H 0.073 0.927 45 H 0.082 0.918 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.015 -13.290 -14.016 19.420 hybrid contribution 1.039 1.255 0.809 1.819 sum -0.976 -12.036 -13.207 17.895 Atomic orbital electron populations 1.69638 1.05082 1.25857 1.57333 1.24712 0.95456 0.97611 1.02550 0.86314 0.78634 0.83584 0.77960 1.21201 1.21716 1.21188 1.19056 0.91060 0.83628 1.43017 0.91169 1.42055 1.06088 0.99067 1.86798 1.20822 0.93033 0.87406 0.90707 1.21874 0.90431 1.00642 0.87521 1.45640 1.10861 1.72169 1.06079 1.17578 0.87753 0.77003 0.82164 1.90722 1.17941 1.51686 1.82301 1.20227 0.92669 1.08803 0.94234 1.25459 0.97641 1.06901 1.04694 1.82778 1.08393 1.69585 0.95216 1.24632 0.95445 1.13121 0.99905 1.20391 0.96146 0.99566 0.89971 1.20515 0.91192 1.02422 0.95062 1.21624 0.99007 0.99826 0.95437 1.21589 0.93813 1.01155 0.99005 1.20268 0.98317 1.01841 0.87617 1.23338 0.96344 1.00366 0.99006 1.22658 0.98519 0.99512 0.95856 1.23144 0.99821 0.97891 0.97432 0.93455 0.77977 0.92633 0.91216 0.76752 0.81177 0.90315 0.89079 0.91810 0.91347 0.91305 0.91394 0.90492 0.90654 0.91295 0.90680 0.90052 0.92716 0.91758 0.90434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.98 13.07 55.49 0.73 -26.26 16 2 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 3 Si 0.90 22.26 29.55 -169.99 -5.02 17.24 16 4 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.24 -6.24 9.04 -15.06 -0.14 -6.38 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 N -0.70 -16.08 5.18 -46.48 -0.24 -16.32 16 10 C 0.17 3.20 0.80 -131.01 -0.10 3.10 16 11 C 0.12 2.27 5.08 -4.04 -0.02 2.25 16 12 N -0.70 -12.37 5.39 -61.45 -0.33 -12.71 16 13 C 0.57 10.46 7.79 -12.63 -0.10 10.36 16 14 O -0.55 -11.28 14.61 5.24 0.08 -11.21 16 15 C -0.14 -2.24 5.97 -104.56 -0.62 -2.86 16 16 C -0.21 -2.85 10.35 29.80 0.31 -2.54 16 17 S 0.17 1.93 22.99 -107.50 -2.47 -0.54 16 18 C -0.21 -2.58 6.32 -35.35 -0.22 -2.81 16 19 C -0.05 -0.71 5.95 -102.82 -0.61 -1.32 16 20 C -0.05 -0.70 5.07 -27.22 -0.14 -0.84 16 21 C -0.12 -1.19 5.90 -26.63 -0.16 -1.35 16 22 C -0.12 -1.01 5.93 -26.58 -0.16 -1.17 16 23 C -0.04 -0.37 6.26 -27.37 -0.17 -0.54 16 24 C -0.15 -2.57 7.29 -25.83 -0.19 -2.76 16 25 C -0.13 -1.98 8.00 -25.83 -0.21 -2.19 16 26 C -0.14 -2.22 7.05 -25.92 -0.18 -2.40 16 27 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 28 H 0.39 9.43 7.87 -40.82 -0.32 9.11 16 29 H 0.06 0.97 8.02 -51.93 -0.42 0.56 16 30 H 0.07 1.52 7.80 -51.93 -0.41 1.12 16 31 H 0.40 6.59 6.77 -40.82 -0.28 6.32 16 32 H 0.17 2.12 6.97 -52.48 -0.37 1.75 16 33 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.09 1.35 6.94 -51.93 -0.36 0.99 16 35 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.64 8.11 -51.93 -0.42 0.22 16 39 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 1.04 8.01 -51.93 -0.42 0.63 16 42 H 0.07 1.44 7.87 -51.93 -0.41 1.03 16 43 H 0.08 1.38 8.14 -51.92 -0.42 0.96 16 44 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.06 0.98 8.09 -51.93 -0.42 0.56 16 46 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 LS Contribution 380.19 15.07 5.73 5.73 Total: -1.00 -30.33 380.19 -11.50 -41.83 By element: Atomic # 1 Polarization: 21.13 SS G_CDS: -7.16 Total: 13.97 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: -2.81 Total: -11.74 kcal Atomic # 7 Polarization: -55.44 SS G_CDS: 0.15 Total: -55.28 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: 0.08 Total: -11.21 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Atomic # 16 Polarization: 1.93 SS G_CDS: -2.47 Total: -0.54 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.33 -11.50 -41.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754991830.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.744 kcal (2) G-P(sol) polarization free energy of solvation -30.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds