Wall clock time and date at job start Tue Mar 31 2020 18:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00208 * 2 1 4 4 H 1.48503 * 109.47007 * 239.99698 * 3 2 1 5 5 H 1.48498 * 109.46900 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47279 * 119.99702 * 3 2 1 7 7 C 1.38817 * 120.00031 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99840 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99555 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99919 * 173.69068 * 9 7 2 11 11 C 1.52999 * 112.84679 * 294.88213 * 10 9 7 12 12 N 1.46502 * 109.47239 * 292.10939 * 11 10 9 13 13 C 1.34775 * 120.00117 * 180.85529 * 12 11 10 14 14 O 1.21643 * 120.00207 * 0.02562 * 13 12 11 15 15 C 1.47191 * 120.00071 * 179.97438 * 13 12 11 16 16 C 1.35624 * 123.18841 * 0.03094 * 15 13 12 17 17 S 1.70264 * 110.84054 * 180.25083 * 16 15 13 18 18 C 1.75590 * 92.62800 * 359.64887 * 17 16 15 19 19 C 1.34009 * 110.60112 * 0.34402 * 18 17 16 20 20 C 1.52013 * 123.46296 * 179.75373 * 19 18 17 21 21 C 1.53035 * 108.76438 * 342.88558 * 20 19 18 22 22 C 1.53158 * 109.21382 * 50.63212 * 21 20 19 23 23 C 1.51612 * 125.04809 * 180.09148 * 18 17 16 24 24 C 1.53777 * 113.61695 * 66.07802 * 10 9 7 25 25 C 1.53950 * 87.02045 * 89.23283 * 24 10 9 26 26 C 1.53777 * 87.11282 * 25.35999 * 25 24 10 27 27 H 0.97005 * 119.99668 * 0.02562 * 1 2 3 28 28 H 0.97007 * 120.00213 * 353.68349 * 9 7 2 29 29 H 1.08999 * 109.47220 * 172.11014 * 11 10 9 30 30 H 1.09002 * 109.47058 * 52.10945 * 11 10 9 31 31 H 0.97001 * 119.99614 * 0.85570 * 12 11 10 32 32 H 1.08003 * 124.57845 * 359.97438 * 16 15 13 33 33 H 1.08995 * 109.59086 * 102.65593 * 20 19 18 34 34 H 1.09003 * 109.58566 * 223.08998 * 20 19 18 35 35 H 1.08998 * 109.50742 * 290.71666 * 21 20 19 36 36 H 1.08991 * 109.51614 * 170.55857 * 21 20 19 37 37 H 1.09000 * 109.53938 * 169.76679 * 22 21 20 38 38 H 1.08996 * 109.53933 * 49.50849 * 22 21 20 39 39 H 1.09000 * 109.59548 * 283.42299 * 23 18 17 40 40 H 1.08999 * 109.59780 * 43.88827 * 23 18 17 41 41 H 1.09004 * 113.61638 * 203.75348 * 24 10 9 42 42 H 1.09007 * 113.61512 * 334.65214 * 24 10 9 43 43 H 1.09007 * 113.53567 * 270.81276 * 25 24 10 44 44 H 1.08999 * 113.66612 * 139.93705 * 25 24 10 45 45 H 1.08999 * 113.62176 * 220.09019 * 26 25 24 46 46 H 1.09003 * 113.61023 * 89.18921 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0513 -3.6530 -0.1383 11 6 2.7366 -3.7984 -1.4985 12 7 1.7206 -3.9312 -2.5456 13 6 2.0941 -4.0899 -3.8308 14 8 3.2748 -4.1233 -4.1214 15 6 1.0733 -4.2239 -4.8827 16 6 -0.2593 -4.1963 -4.6319 17 16 -1.1504 -4.3851 -6.0703 18 6 0.3019 -4.4957 -7.0509 19 6 1.3969 -4.3972 -6.2846 20 6 2.8129 -4.4614 -6.8338 21 6 2.7690 -5.0660 -8.2389 22 6 1.7203 -4.3251 -9.0739 23 6 0.3246 -4.6829 -8.5552 24 6 2.9719 -3.9689 1.0522 25 6 1.7640 -4.6737 1.6959 26 6 1.2264 -4.8847 0.2707 27 1 -0.4850 0.8401 -0.0004 28 1 0.3598 -2.3905 0.0926 29 1 3.3707 -4.6850 -1.4930 30 1 3.3468 -2.9166 -1.6941 31 1 0.7791 -3.9050 -2.3138 32 1 -0.6961 -4.0756 -3.6515 33 1 3.2322 -3.4565 -6.8815 34 1 3.4281 -5.0860 -6.1860 35 1 2.5029 -6.1210 -8.1731 36 1 3.7468 -4.9650 -8.7095 37 1 1.8086 -4.6237 -10.1185 38 1 1.8774 -3.2501 -8.9860 39 1 0.0996 -5.7214 -8.7979 40 1 -0.4154 -4.0287 -9.0162 41 1 3.7904 -4.6447 0.8040 42 1 3.3026 -3.0836 1.5955 43 1 1.1459 -4.0114 2.3021 44 1 2.0203 -5.6013 2.2077 45 1 0.1498 -4.7377 0.1838 46 1 1.5667 -5.8113 -0.1916 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754991830.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:34 Heat of formation + Delta-G solvation = -9.653467 kcal Electronic energy + Delta-G solvation = -26704.717503 eV Core-core repulsion = 23106.023946 eV Total energy + Delta-G solvation = -3598.693558 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.21998 -40.21389 -39.11108 -36.01221 -35.28551 -35.17797 -31.96500 -31.68918 -30.34910 -28.61915 -26.75356 -26.01594 -25.31079 -24.23164 -23.32064 -22.58819 -20.90770 -19.75274 -19.20267 -19.15389 -18.58817 -17.90498 -16.98750 -16.49551 -16.28757 -16.00747 -15.69360 -15.45493 -15.26270 -15.16949 -14.89301 -14.71699 -14.35013 -14.20783 -14.00497 -13.63703 -13.58014 -13.13000 -13.10700 -12.97648 -12.91039 -12.59927 -12.50421 -12.36160 -12.22982 -11.95877 -11.72724 -11.64562 -11.60876 -11.50647 -11.25372 -11.01220 -10.88598 -10.69187 -10.04300 -9.57340 -9.22930 -9.01227 -7.96462 -5.23145 -0.22907 0.57422 0.94185 0.95095 1.42751 1.44592 1.49574 2.24250 2.38173 2.52548 3.35604 3.58255 3.71686 3.77988 3.83601 3.95224 3.98850 4.03214 4.09223 4.10673 4.20917 4.26709 4.35121 4.58369 4.63429 4.64200 4.69552 4.80382 4.86309 4.88448 4.90499 4.97494 5.00429 5.01372 5.10078 5.11183 5.20905 5.28160 5.34774 5.40018 5.45104 5.48380 5.60592 5.61121 5.68154 6.27831 6.59138 7.23891 7.34183 8.07341 8.31638 9.25766 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.012068 B = 0.003383 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2319.705205 B = 8274.036384 C = 8930.315196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.961 5.961 2 C -0.063 4.063 3 Si 0.956 3.044 4 H -0.290 1.290 5 H -0.294 1.294 6 H -0.278 1.278 7 C -0.226 4.226 8 H 0.065 0.935 9 N -0.705 5.705 10 C 0.158 3.842 11 C 0.130 3.870 12 N -0.696 5.696 13 C 0.564 3.436 14 O -0.580 6.580 15 C -0.173 4.173 16 C -0.219 4.219 17 S 0.238 5.762 18 C -0.210 4.210 19 C -0.081 4.081 20 C -0.051 4.051 21 C -0.115 4.115 22 C -0.114 4.114 23 C -0.043 4.043 24 C -0.149 4.149 25 C -0.119 4.119 26 C -0.128 4.128 27 H 0.250 0.750 28 H 0.377 0.623 29 H 0.071 0.929 30 H 0.030 0.970 31 H 0.404 0.596 32 H 0.177 0.823 33 H 0.058 0.942 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.097 0.903 38 H 0.056 0.944 39 H 0.098 0.902 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.048 0.952 43 H 0.062 0.938 44 H 0.086 0.914 45 H 0.067 0.933 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.440 -15.272 -15.058 21.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.611 5.611 2 C -0.256 4.256 3 Si 0.786 3.214 4 H -0.217 1.217 5 H -0.220 1.220 6 H -0.205 1.205 7 C -0.358 4.358 8 H 0.083 0.917 9 N -0.344 5.344 10 C 0.067 3.933 11 C 0.004 3.996 12 N -0.345 5.345 13 C 0.351 3.649 14 O -0.462 6.462 15 C -0.191 4.191 16 C -0.357 4.357 17 S 0.508 5.492 18 C -0.327 4.327 19 C -0.091 4.091 20 C -0.090 4.090 21 C -0.153 4.153 22 C -0.153 4.153 23 C -0.082 4.082 24 C -0.189 4.189 25 C -0.156 4.156 26 C -0.166 4.166 27 H 0.058 0.942 28 H 0.211 0.789 29 H 0.089 0.911 30 H 0.048 0.952 31 H 0.239 0.761 32 H 0.195 0.805 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.115 0.885 38 H 0.075 0.925 39 H 0.116 0.884 40 H 0.112 0.888 41 H 0.112 0.888 42 H 0.067 0.933 43 H 0.081 0.919 44 H 0.105 0.895 45 H 0.085 0.915 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.087 -15.199 -15.526 21.946 hybrid contribution 1.370 1.764 1.247 2.558 sum -1.717 -13.435 -14.280 19.682 Atomic orbital electron populations 1.69754 1.06022 1.25798 1.59521 1.25306 0.96192 1.00160 1.03970 0.85482 0.77478 0.80647 0.77789 1.21652 1.22014 1.20452 1.19262 0.90978 0.84997 1.40531 0.91715 1.42087 1.05748 0.99866 1.86728 1.21119 0.94344 0.87024 0.90828 1.21708 0.90510 0.99470 0.87889 1.45613 1.10897 1.72065 1.05937 1.18078 0.88038 0.76116 0.82699 1.90690 1.19464 1.53252 1.82811 1.20181 0.92833 1.11739 0.94384 1.25700 0.97447 1.05983 1.06588 1.82536 1.06582 1.67296 0.92776 1.25152 0.95230 1.10652 1.01653 1.20498 0.97163 1.01745 0.89707 1.20430 0.90654 1.01000 0.96959 1.21602 1.00345 1.00006 0.93338 1.21602 0.93118 1.00337 1.00244 1.20484 0.98985 1.03572 0.85206 1.23359 0.97541 1.00123 0.97874 1.22579 0.96931 1.00217 0.95866 1.23100 0.99573 0.96894 0.96988 0.94154 0.78946 0.91129 0.95187 0.76094 0.80537 0.92391 0.91630 0.91130 0.90270 0.88454 0.92468 0.88385 0.88818 0.88803 0.93316 0.91941 0.89500 0.91473 0.87905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.83 13.07 21.65 0.28 -56.55 16 2 C -0.06 -3.58 5.50 84.86 0.47 -3.11 16 3 Si 0.96 46.76 29.55 68.60 2.03 48.79 16 4 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 5 H -0.29 -14.41 7.11 99.48 0.71 -13.71 16 6 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 7 C -0.23 -12.18 9.04 84.04 0.76 -11.42 16 8 H 0.06 3.51 7.83 -2.92 -0.02 3.49 16 9 N -0.70 -32.97 5.18 -300.98 -1.56 -34.53 16 10 C 0.16 5.81 0.80 4.13 0.00 5.82 16 11 C 0.13 4.97 5.08 86.38 0.44 5.41 16 12 N -0.70 -25.21 5.39 -466.58 -2.51 -27.73 16 13 C 0.56 21.51 7.79 86.60 0.67 22.19 16 14 O -0.58 -25.29 14.61 -4.17 -0.06 -25.35 16 15 C -0.17 -5.57 5.97 -19.82 -0.12 -5.69 16 16 C -0.22 -5.80 10.35 67.21 0.70 -5.11 16 17 S 0.24 4.79 22.99 -56.49 -1.30 3.49 16 18 C -0.21 -4.65 6.32 25.01 0.16 -4.49 16 19 C -0.08 -2.31 5.95 -18.70 -0.11 -2.42 16 20 C -0.05 -1.41 5.07 30.28 0.15 -1.26 16 21 C -0.12 -2.13 5.90 30.66 0.18 -1.95 16 22 C -0.11 -1.69 5.93 30.69 0.18 -1.51 16 23 C -0.04 -0.64 6.26 30.18 0.19 -0.45 16 24 C -0.15 -4.95 7.29 31.18 0.23 -4.72 16 25 C -0.12 -3.43 8.00 31.18 0.25 -3.18 16 26 C -0.13 -3.66 7.05 31.12 0.22 -3.44 16 27 H 0.25 14.55 8.31 -92.70 -0.77 13.77 16 28 H 0.38 18.79 7.87 -92.70 -0.73 18.06 16 29 H 0.07 2.46 8.02 -2.39 -0.02 2.44 16 30 H 0.03 1.37 7.80 -2.39 -0.02 1.35 16 31 H 0.40 13.52 6.77 -92.71 -0.63 12.89 16 32 H 0.18 4.28 6.97 -2.91 -0.02 4.26 16 33 H 0.06 1.76 8.14 -2.39 -0.02 1.75 16 34 H 0.07 2.09 6.94 -2.39 -0.02 2.07 16 35 H 0.07 1.21 8.10 -2.39 -0.02 1.19 16 36 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.06 0.98 8.11 -2.39 -0.02 0.96 16 39 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.09 2.65 8.01 -2.38 -0.02 2.63 16 42 H 0.05 1.87 7.87 -2.38 -0.02 1.85 16 43 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 44 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 45 H 0.07 1.92 8.09 -2.39 -0.02 1.90 16 46 H 0.10 2.48 8.10 -2.39 -0.02 2.47 16 Total: -1.00 -68.35 380.19 0.89 -67.46 By element: Atomic # 1 Polarization: 40.11 SS G_CDS: -0.36 Total: 39.76 kcal Atomic # 6 Polarization: -19.70 SS G_CDS: 4.37 Total: -15.33 kcal Atomic # 7 Polarization: -115.02 SS G_CDS: -3.79 Total: -118.81 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -0.06 Total: -25.35 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Atomic # 16 Polarization: 4.79 SS G_CDS: -1.30 Total: 3.49 kcal Total: -68.35 0.89 -67.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754991830.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.804 kcal (2) G-P(sol) polarization free energy of solvation -68.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds