Wall clock time and date at job start Tue Mar 31 2020 18:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86803 * 120.00263 * 2 1 4 4 H 1.48493 * 109.47416 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47024 * 300.00541 * 3 2 1 6 6 H 1.48502 * 109.46799 * 59.99846 * 3 2 1 7 7 C 1.38810 * 119.99790 * 180.02562 * 2 1 3 8 8 H 1.08011 * 119.99904 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00373 * 359.97438 * 7 2 1 10 10 C 1.46502 * 120.00144 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47103 * 179.97438 * 10 9 7 12 12 C 1.53777 * 113.61456 * 185.00047 * 11 10 9 13 13 C 1.53784 * 87.08019 * 219.93884 * 12 11 10 14 14 N 1.46499 * 113.61395 * 139.98363 * 13 12 11 15 15 C 1.34778 * 119.99580 * 156.52838 * 14 13 12 16 16 O 1.21277 * 120.00510 * 359.97438 * 15 14 13 17 17 C 1.50700 * 119.99466 * 179.97438 * 15 14 13 18 18 H 1.08999 * 110.81207 * 58.31864 * 17 15 14 19 19 C 1.54707 * 110.74992 * 294.99868 * 17 15 14 20 20 C 1.51656 * 101.92965 * 266.97124 * 19 17 15 21 21 C 1.37756 * 132.13658 * 164.58758 * 20 19 17 22 22 C 1.38531 * 119.95500 * 180.36510 * 21 20 19 23 23 F 1.35105 * 120.13900 * 180.02562 * 22 21 20 24 24 C 1.38473 * 119.71670 * 359.97438 * 22 21 20 25 25 C 1.37932 * 120.32190 * 359.85322 * 24 22 21 26 26 C 1.38854 * 107.04883 * 344.60973 * 20 19 17 27 27 O 1.36191 * 111.23110 * 358.92904 * 26 20 19 28 28 C 1.53785 * 87.17435 * 25.39007 * 13 12 11 29 29 H 0.97000 * 120.00242 * 0.02562 * 1 2 3 30 30 H 0.96995 * 119.99894 * 359.97438 * 9 7 2 31 31 H 1.09000 * 109.46952 * 59.99777 * 10 9 7 32 32 H 1.08995 * 109.47045 * 299.99909 * 10 9 7 33 33 H 1.08998 * 112.84764 * 316.19938 * 11 10 9 34 34 H 1.08998 * 113.61366 * 105.38599 * 12 11 10 35 35 H 1.09001 * 113.61507 * 334.48493 * 12 11 10 36 36 H 1.08998 * 113.61030 * 270.79774 * 13 12 11 37 37 H 0.96994 * 119.99994 * 336.52113 * 14 13 12 38 38 H 1.08999 * 110.93782 * 148.81820 * 19 17 15 39 39 H 1.08994 * 110.94147 * 25.13407 * 19 17 15 40 40 H 1.07999 * 120.01982 * 0.33393 * 21 20 19 41 41 H 1.07998 * 119.83722 * 179.83742 * 24 22 21 42 42 H 1.08004 * 119.86416 * 179.97438 * 25 24 22 43 43 H 1.08997 * 113.61316 * 89.15576 * 28 13 12 44 44 H 1.08996 * 113.61466 * 220.06428 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0637 -4.8198 0.0001 12 6 1.7304 -6.2001 0.1230 13 6 0.7030 -6.7006 -0.9061 14 7 1.2637 -7.6280 -1.8918 15 6 0.4580 -8.4966 -2.5344 16 8 -0.7311 -8.5108 -2.2963 17 6 1.0348 -9.4502 -3.5488 18 1 1.8028 -10.0781 -3.0971 19 6 1.6017 -8.6800 -4.7648 20 6 0.4186 -8.6777 -5.7136 21 6 0.1426 -7.9417 -6.8449 22 6 -1.0445 -8.1444 -7.5296 23 9 -1.3187 -7.4251 -8.6398 24 6 -1.9484 -9.0883 -7.0717 25 6 -1.6703 -9.8277 -5.9410 26 6 -0.4776 -9.6313 -5.2493 27 8 -0.0008 -10.2558 -4.1369 28 6 0.6119 -5.2496 -1.4075 29 1 -0.4850 0.8400 -0.0004 30 1 0.3555 -2.3881 0.0002 31 1 2.6847 -3.7145 0.8894 32 1 2.6846 -3.7146 -0.8905 33 1 0.2379 -4.6702 0.6956 34 1 1.6181 -6.6531 1.1080 35 1 2.7580 -6.2225 -0.2396 36 1 -0.2208 -7.0666 -0.4582 37 1 2.2148 -7.6169 -2.0820 38 1 2.4492 -9.2092 -5.2005 39 1 1.8801 -7.6636 -4.4868 40 1 0.8511 -7.2067 -7.1976 41 1 -2.8756 -9.2461 -7.6024 42 1 -2.3808 -10.5616 -5.5902 43 1 1.3332 -5.0117 -2.1892 44 1 -0.4021 -4.9365 -1.6562 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755218129.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:32 Heat of formation + Delta-G solvation = -50.763379 kcal Electronic energy + Delta-G solvation = -27694.812521 eV Core-core repulsion = 23528.123128 eV Total energy + Delta-G solvation = -4166.689393 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.11229 -41.91295 -39.92554 -38.39203 -37.32327 -34.67138 -33.77988 -32.90999 -30.95421 -30.13956 -29.87100 -26.88653 -25.57584 -25.14276 -23.36152 -22.86650 -22.28208 -21.58484 -20.69983 -19.60039 -18.17551 -17.83088 -17.62651 -17.17724 -17.01696 -16.16742 -15.93181 -15.62282 -15.26951 -14.92735 -14.70856 -14.58337 -14.47312 -13.83537 -13.63323 -13.41738 -13.39458 -13.24801 -13.10179 -13.00935 -12.77784 -12.35253 -12.28850 -11.84823 -11.75393 -11.64629 -11.23342 -11.19304 -10.88560 -10.75355 -10.38028 -10.14872 -10.02345 -9.86122 -9.65005 -9.44608 -9.13251 -8.86683 -8.41215 -6.91353 -5.76356 -3.05027 0.70992 0.80594 2.22341 2.51416 2.99167 3.17666 3.42789 3.47957 3.50603 3.67022 3.89248 4.13654 4.26989 4.37123 4.56439 4.60110 4.63549 4.68565 4.76066 4.78486 4.97023 5.02963 5.06489 5.10780 5.19876 5.42795 5.56938 5.65084 5.68251 5.76212 5.76900 5.85577 5.87011 5.98838 6.04949 6.13014 6.17970 6.21944 6.38665 6.54196 6.66907 6.75183 6.88161 7.24149 7.69488 7.92780 8.42583 9.53629 10.12607 10.46863 11.46592 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.012732 B = 0.002350 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.689619 B =11911.243553 C =13395.563944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.732 5.732 10 C 0.166 3.834 11 C -0.111 4.111 12 C -0.136 4.136 13 C 0.118 3.882 14 N -0.711 5.711 15 C 0.495 3.505 16 O -0.518 6.518 17 C 0.063 3.937 18 H 0.146 0.854 19 C -0.100 4.100 20 C -0.148 4.148 21 C -0.100 4.100 22 C 0.071 3.929 23 F -0.137 7.137 24 C -0.116 4.116 25 C -0.103 4.103 26 C 0.103 3.897 27 O -0.270 6.270 28 C -0.138 4.138 29 H 0.255 0.745 30 H 0.384 0.616 31 H 0.019 0.981 32 H 0.018 0.982 33 H 0.094 0.906 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.113 0.887 37 H 0.401 0.599 38 H 0.109 0.891 39 H 0.103 0.897 40 H 0.140 0.860 41 H 0.145 0.855 42 H 0.141 0.859 43 H 0.084 0.916 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.327 -24.854 -11.926 27.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.038 3.962 11 C -0.130 4.130 12 C -0.175 4.175 13 C 0.014 3.986 14 N -0.364 5.364 15 C 0.279 3.721 16 O -0.392 6.392 17 C 0.003 3.997 18 H 0.163 0.837 19 C -0.137 4.137 20 C -0.149 4.149 21 C -0.119 4.119 22 C 0.051 3.949 23 F -0.116 7.116 24 C -0.135 4.135 25 C -0.122 4.122 26 C 0.058 3.942 27 O -0.182 6.182 28 C -0.177 4.177 29 H 0.064 0.936 30 H 0.218 0.782 31 H 0.037 0.963 32 H 0.036 0.964 33 H 0.112 0.888 34 H 0.091 0.909 35 H 0.104 0.896 36 H 0.131 0.869 37 H 0.235 0.765 38 H 0.127 0.873 39 H 0.121 0.879 40 H 0.158 0.842 41 H 0.163 0.837 42 H 0.158 0.842 43 H 0.102 0.898 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.508 -24.949 -11.688 27.665 hybrid contribution 0.638 1.302 -0.253 1.472 sum 3.146 -23.647 -11.941 26.677 Atomic orbital electron populations 1.69669 1.05112 1.25535 1.57801 1.24751 0.95526 0.97714 1.03093 0.86126 0.78740 0.84175 0.77209 1.20586 1.21873 1.21852 1.19270 0.91010 0.84233 1.42564 0.91210 1.42365 1.05915 0.99971 1.89386 1.20588 0.92835 0.85150 0.97588 1.22569 0.99490 0.93876 0.97052 1.23332 0.98596 0.96734 0.98804 1.22735 0.98386 0.88152 0.89327 1.45998 1.11301 1.36994 1.42085 1.20820 0.87539 0.81420 0.82298 1.90762 1.15171 1.69335 1.63967 1.23391 0.89341 0.93005 0.93980 0.83702 1.21822 0.96833 1.02920 0.92110 1.20452 0.96591 0.99977 0.97883 1.20198 0.96657 1.00389 0.94649 1.17374 0.95864 0.95133 0.86505 1.91514 1.93870 1.76424 1.49743 1.20874 0.99956 0.95726 0.96921 1.20085 0.94272 1.02255 0.95583 1.19542 0.93659 0.92970 0.88036 1.86964 1.52223 1.40908 1.38125 1.23478 1.02599 0.93801 0.97809 0.93550 0.78243 0.96331 0.96408 0.88819 0.90871 0.89592 0.86924 0.76479 0.87289 0.87886 0.84196 0.83696 0.84152 0.89771 0.91087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.45 13.06 55.49 0.72 -27.73 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.45 29.55 -169.99 -5.02 17.42 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 7 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 8 H 0.07 1.90 7.83 -52.48 -0.41 1.48 16 9 N -0.73 -18.51 5.60 -59.90 -0.34 -18.84 16 10 C 0.17 3.21 6.10 -4.04 -0.02 3.19 16 11 C -0.11 -1.68 3.75 -89.71 -0.34 -2.01 16 12 C -0.14 -1.51 7.39 -25.92 -0.19 -1.70 16 13 C 0.12 1.39 4.21 -67.11 -0.28 1.10 16 14 N -0.71 -6.62 5.20 -53.01 -0.28 -6.89 16 15 C 0.50 5.60 7.07 -10.98 -0.08 5.52 16 16 O -0.52 -8.41 16.15 -13.50 -0.22 -8.63 16 17 C 0.06 0.51 4.11 -26.98 -0.11 0.39 16 18 H 0.15 0.62 8.14 -51.93 -0.42 0.19 16 19 C -0.10 -0.65 6.64 -26.51 -0.18 -0.83 16 20 C -0.15 -1.42 6.26 -104.10 -0.65 -2.07 16 21 C -0.10 -0.95 10.02 -39.65 -0.40 -1.35 16 22 C 0.07 0.72 7.31 -39.39 -0.29 0.43 16 23 F -0.14 -1.49 17.27 2.25 0.04 -1.45 16 24 C -0.12 -1.05 10.00 -39.61 -0.40 -1.44 16 25 C -0.10 -1.00 10.06 -39.31 -0.40 -1.40 16 26 C 0.10 1.12 6.90 -38.97 -0.27 0.85 16 27 O -0.27 -2.98 10.41 -39.41 -0.41 -3.39 16 28 C -0.14 -1.97 7.45 -25.82 -0.19 -2.16 16 29 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 30 H 0.38 10.28 7.67 -40.82 -0.31 9.96 16 31 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.02 0.35 7.86 -51.93 -0.41 -0.06 16 33 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.09 0.82 8.07 -51.93 -0.42 0.40 16 36 H 0.11 1.50 7.50 -51.93 -0.39 1.11 16 37 H 0.40 2.38 8.71 -40.82 -0.36 2.02 16 38 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.10 0.60 7.78 -51.93 -0.40 0.20 16 40 H 0.14 1.09 8.06 -52.49 -0.42 0.66 16 41 H 0.15 0.96 8.06 -52.49 -0.42 0.53 16 42 H 0.14 1.11 8.06 -52.48 -0.42 0.69 16 43 H 0.08 1.19 7.91 -51.93 -0.41 0.78 16 44 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 375.99 15.07 5.67 5.67 Total: -1.00 -35.58 375.99 -9.92 -45.50 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -6.05 Total: 7.22 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: -4.04 Total: -8.87 kcal Atomic # 7 Polarization: -53.58 SS G_CDS: 0.11 Total: -53.46 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: -0.63 Total: -12.02 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.58 -9.92 -45.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755218129.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.264 kcal (2) G-P(sol) polarization free energy of solvation -35.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds