Wall clock time and date at job start Tue Mar 31 2020 18:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86803 * 120.00263 * 2 1 4 4 H 1.48493 * 109.47416 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47024 * 300.00541 * 3 2 1 6 6 H 1.48502 * 109.46799 * 59.99846 * 3 2 1 7 7 C 1.38810 * 119.99790 * 180.02562 * 2 1 3 8 8 H 1.08011 * 119.99904 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00373 * 359.97438 * 7 2 1 10 10 C 1.46502 * 120.00144 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47103 * 179.97438 * 10 9 7 12 12 C 1.53777 * 113.61456 * 185.00047 * 11 10 9 13 13 C 1.53784 * 87.08019 * 219.93884 * 12 11 10 14 14 N 1.46499 * 113.61395 * 139.98363 * 13 12 11 15 15 C 1.34778 * 119.99580 * 156.52838 * 14 13 12 16 16 O 1.21277 * 120.00510 * 359.97438 * 15 14 13 17 17 C 1.50700 * 119.99466 * 179.97438 * 15 14 13 18 18 H 1.08999 * 110.81207 * 58.31864 * 17 15 14 19 19 C 1.54707 * 110.74992 * 294.99868 * 17 15 14 20 20 C 1.51656 * 101.92965 * 266.97124 * 19 17 15 21 21 C 1.37756 * 132.13658 * 164.58758 * 20 19 17 22 22 C 1.38531 * 119.95500 * 180.36510 * 21 20 19 23 23 F 1.35105 * 120.13900 * 180.02562 * 22 21 20 24 24 C 1.38473 * 119.71670 * 359.97438 * 22 21 20 25 25 C 1.37932 * 120.32190 * 359.85322 * 24 22 21 26 26 C 1.38854 * 107.04883 * 344.60973 * 20 19 17 27 27 O 1.36191 * 111.23110 * 358.92904 * 26 20 19 28 28 C 1.53785 * 87.17435 * 25.39007 * 13 12 11 29 29 H 0.97000 * 120.00242 * 0.02562 * 1 2 3 30 30 H 0.96995 * 119.99894 * 359.97438 * 9 7 2 31 31 H 1.09000 * 109.46952 * 59.99777 * 10 9 7 32 32 H 1.08995 * 109.47045 * 299.99909 * 10 9 7 33 33 H 1.08998 * 112.84764 * 316.19938 * 11 10 9 34 34 H 1.08998 * 113.61366 * 105.38599 * 12 11 10 35 35 H 1.09001 * 113.61507 * 334.48493 * 12 11 10 36 36 H 1.08998 * 113.61030 * 270.79774 * 13 12 11 37 37 H 0.96994 * 119.99994 * 336.52113 * 14 13 12 38 38 H 1.08999 * 110.93782 * 148.81820 * 19 17 15 39 39 H 1.08994 * 110.94147 * 25.13407 * 19 17 15 40 40 H 1.07999 * 120.01982 * 0.33393 * 21 20 19 41 41 H 1.07998 * 119.83722 * 179.83742 * 24 22 21 42 42 H 1.08004 * 119.86416 * 179.97438 * 25 24 22 43 43 H 1.08997 * 113.61316 * 89.15576 * 28 13 12 44 44 H 1.08996 * 113.61466 * 220.06428 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0637 -4.8198 0.0001 12 6 1.7304 -6.2001 0.1230 13 6 0.7030 -6.7006 -0.9061 14 7 1.2637 -7.6280 -1.8918 15 6 0.4580 -8.4966 -2.5344 16 8 -0.7311 -8.5108 -2.2963 17 6 1.0348 -9.4502 -3.5488 18 1 1.8028 -10.0781 -3.0971 19 6 1.6017 -8.6800 -4.7648 20 6 0.4186 -8.6777 -5.7136 21 6 0.1426 -7.9417 -6.8449 22 6 -1.0445 -8.1444 -7.5296 23 9 -1.3187 -7.4251 -8.6398 24 6 -1.9484 -9.0883 -7.0717 25 6 -1.6703 -9.8277 -5.9410 26 6 -0.4776 -9.6313 -5.2493 27 8 -0.0008 -10.2558 -4.1369 28 6 0.6119 -5.2496 -1.4075 29 1 -0.4850 0.8400 -0.0004 30 1 0.3555 -2.3881 0.0002 31 1 2.6847 -3.7145 0.8894 32 1 2.6846 -3.7146 -0.8905 33 1 0.2379 -4.6702 0.6956 34 1 1.6181 -6.6531 1.1080 35 1 2.7580 -6.2225 -0.2396 36 1 -0.2208 -7.0666 -0.4582 37 1 2.2148 -7.6169 -2.0820 38 1 2.4492 -9.2092 -5.2005 39 1 1.8801 -7.6636 -4.4868 40 1 0.8511 -7.2067 -7.1976 41 1 -2.8756 -9.2461 -7.6024 42 1 -2.3808 -10.5616 -5.5902 43 1 1.3332 -5.0117 -2.1892 44 1 -0.4021 -4.9365 -1.6562 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755218129.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:31 Heat of formation + Delta-G solvation = -73.938440 kcal Electronic energy + Delta-G solvation = -27695.817467 eV Core-core repulsion = 23528.123128 eV Total energy + Delta-G solvation = -4167.694340 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.90994 -42.62401 -40.89753 -39.41016 -38.09867 -36.34359 -34.89673 -33.75568 -32.79454 -30.86896 -30.62400 -28.44898 -26.64017 -26.07518 -24.94599 -23.72191 -22.97565 -22.80292 -21.63508 -20.75924 -19.15808 -18.89825 -18.55676 -18.34658 -17.87434 -17.20947 -16.75832 -16.61076 -16.42953 -16.24222 -15.81179 -15.60385 -15.29124 -15.15782 -14.95466 -14.59759 -14.49252 -14.24250 -14.01362 -13.85394 -13.50573 -13.36013 -13.27527 -13.04149 -12.97268 -12.82575 -12.69010 -12.50398 -12.16379 -12.06744 -11.90082 -11.84470 -11.39797 -11.31344 -10.92547 -10.81887 -10.13746 -10.06421 -9.15555 -8.97963 -7.94858 -5.23512 -0.00050 0.08146 1.39966 1.47136 1.48149 1.58232 1.78827 2.24683 2.47129 2.56344 3.02510 3.28958 3.38558 3.47023 3.53834 3.60342 3.61977 3.75724 3.88527 3.91881 4.02289 4.09847 4.18095 4.31008 4.43998 4.54603 4.61832 4.65563 4.67761 4.81073 4.82748 4.90033 4.97175 4.99651 5.00439 5.05262 5.11853 5.16124 5.23946 5.40610 5.43281 5.50305 5.63187 5.96397 6.27807 6.48448 7.15176 7.33395 8.12034 8.33084 9.29236 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.012732 B = 0.002350 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.689619 B =11911.243553 C =13395.563944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.081 4.081 3 Si 0.974 3.026 4 H -0.263 1.263 5 H -0.295 1.295 6 H -0.294 1.294 7 C -0.242 4.242 8 H 0.079 0.921 9 N -0.749 5.749 10 C 0.164 3.836 11 C -0.116 4.116 12 C -0.109 4.109 13 C 0.130 3.870 14 N -0.694 5.694 15 C 0.491 3.509 16 O -0.576 6.576 17 C 0.065 3.935 18 H 0.191 0.809 19 C -0.091 4.091 20 C -0.156 4.156 21 C -0.108 4.108 22 C 0.052 3.948 23 F -0.145 7.145 24 C -0.117 4.117 25 C -0.116 4.116 26 C 0.079 3.921 27 O -0.288 6.288 28 C -0.141 4.141 29 H 0.250 0.750 30 H 0.371 0.629 31 H 0.024 0.976 32 H 0.028 0.972 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.113 0.887 36 H 0.094 0.906 37 H 0.422 0.578 38 H 0.146 0.854 39 H 0.113 0.887 40 H 0.155 0.845 41 H 0.165 0.835 42 H 0.151 0.849 43 H 0.090 0.910 44 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.371 -26.087 -12.119 29.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.273 4.273 3 Si 0.803 3.197 4 H -0.187 1.187 5 H -0.222 1.222 6 H -0.221 1.221 7 C -0.374 4.374 8 H 0.097 0.903 9 N -0.391 5.391 10 C 0.038 3.962 11 C -0.135 4.135 12 C -0.148 4.148 13 C 0.024 3.976 14 N -0.347 5.347 15 C 0.277 3.723 16 O -0.455 6.455 17 C 0.006 3.994 18 H 0.208 0.792 19 C -0.128 4.128 20 C -0.157 4.157 21 C -0.127 4.127 22 C 0.032 3.968 23 F -0.124 7.124 24 C -0.136 4.136 25 C -0.135 4.135 26 C 0.034 3.966 27 O -0.201 6.201 28 C -0.180 4.180 29 H 0.059 0.941 30 H 0.202 0.798 31 H 0.041 0.959 32 H 0.046 0.954 33 H 0.095 0.905 34 H 0.107 0.893 35 H 0.131 0.869 36 H 0.112 0.888 37 H 0.260 0.740 38 H 0.164 0.836 39 H 0.131 0.869 40 H 0.173 0.827 41 H 0.182 0.818 42 H 0.169 0.831 43 H 0.108 0.892 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 5.643 -26.219 -11.888 29.337 hybrid contribution -0.314 1.637 -0.193 1.678 sum 5.329 -24.582 -12.082 27.904 Atomic orbital electron populations 1.69835 1.06764 1.25940 1.59832 1.25612 0.96391 1.01299 1.03962 0.85061 0.78366 0.79711 0.76569 1.18673 1.22205 1.22147 1.19714 0.91587 0.85382 1.40670 0.90344 1.42651 1.05626 1.01494 1.89310 1.20794 0.93466 0.84068 0.97829 1.22478 0.98837 0.94780 0.97442 1.23223 0.99270 0.92808 0.99476 1.22350 0.98374 0.87082 0.89759 1.45783 1.12268 1.35690 1.40936 1.21553 0.86866 0.81543 0.82327 1.90744 1.17794 1.71055 1.65885 1.23721 0.89136 0.92969 0.93611 0.79199 1.21971 0.96533 1.03807 0.90488 1.20832 0.97634 0.99177 0.98031 1.20425 0.96772 1.00717 0.94748 1.17653 0.96721 0.95704 0.86689 1.91489 1.93997 1.76682 1.50183 1.21097 1.00543 0.95158 0.96773 1.20354 0.94603 1.02701 0.95815 1.19884 0.94459 0.93793 0.88497 1.86941 1.53212 1.41675 1.38273 1.23482 1.01071 0.95895 0.97503 0.94117 0.79750 0.95856 0.95440 0.90477 0.89293 0.86865 0.88766 0.73959 0.83633 0.86883 0.82690 0.81782 0.83139 0.89194 0.93911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.58 13.06 21.65 0.28 -60.30 16 2 C -0.08 -4.68 5.50 84.86 0.47 -4.21 16 3 Si 0.97 46.21 29.55 68.60 2.03 48.24 16 4 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 6 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 7 C -0.24 -13.47 9.99 84.03 0.84 -12.63 16 8 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 9 N -0.75 -38.01 5.60 -343.44 -1.92 -39.94 16 10 C 0.16 6.16 6.10 86.38 0.53 6.68 16 11 C -0.12 -3.43 3.75 -10.21 -0.04 -3.46 16 12 C -0.11 -2.09 7.39 31.12 0.23 -1.86 16 13 C 0.13 2.85 4.21 45.52 0.19 3.05 16 14 N -0.69 -11.02 5.20 -440.03 -2.29 -13.31 16 15 C 0.49 10.27 7.07 87.66 0.62 10.89 16 16 O -0.58 -18.85 16.15 15.20 0.25 -18.60 16 17 C 0.06 0.85 4.11 30.43 0.13 0.98 16 18 H 0.19 0.71 8.14 -2.39 -0.02 0.69 16 19 C -0.09 -0.88 6.64 30.73 0.20 -0.68 16 20 C -0.16 -2.75 6.26 -19.53 -0.12 -2.87 16 21 C -0.11 -1.96 10.02 22.23 0.22 -1.74 16 22 C 0.05 1.04 7.31 22.40 0.16 1.20 16 23 F -0.14 -3.15 17.27 44.97 0.78 -2.37 16 24 C -0.12 -2.11 10.00 22.25 0.22 -1.89 16 25 C -0.12 -2.26 10.06 22.45 0.23 -2.03 16 26 C 0.08 1.67 6.90 22.67 0.16 1.82 16 27 O -0.29 -6.00 10.41 -77.50 -0.81 -6.81 16 28 C -0.14 -3.96 7.45 31.18 0.23 -3.73 16 29 H 0.25 15.08 8.31 -92.71 -0.77 14.30 16 30 H 0.37 20.44 7.67 -92.71 -0.71 19.73 16 31 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.03 0.99 7.86 -2.39 -0.02 0.98 16 33 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 34 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.11 1.61 8.07 -2.39 -0.02 1.59 16 36 H 0.09 2.51 7.50 -2.39 -0.02 2.49 16 37 H 0.42 3.15 8.71 -92.71 -0.81 2.35 16 38 H 0.15 0.40 8.14 -2.39 -0.02 0.39 16 39 H 0.11 0.89 7.78 -2.39 -0.02 0.87 16 40 H 0.16 2.19 8.06 -2.91 -0.02 2.17 16 41 H 0.16 2.12 8.06 -2.91 -0.02 2.09 16 42 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 43 H 0.09 2.41 7.91 -2.39 -0.02 2.39 16 44 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -80.25 375.99 2.11 -78.14 By element: Atomic # 1 Polarization: 25.90 SS G_CDS: -0.47 Total: 25.43 kcal Atomic # 6 Polarization: -14.75 SS G_CDS: 4.27 Total: -10.48 kcal Atomic # 7 Polarization: -109.61 SS G_CDS: -3.93 Total: -113.54 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: -0.56 Total: -25.41 kcal Atomic # 9 Polarization: -3.15 SS G_CDS: 0.78 Total: -2.37 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Total: -80.25 2.11 -78.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755218129.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.206 kcal (2) G-P(sol) polarization free energy of solvation -80.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds