Wall clock time and date at job start Tue Mar 31 2020 17:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35639 * 117.00096 * 2 1 4 4 C 1.40759 * 120.33030 * 0.02562 * 3 2 1 5 5 C 1.35011 * 120.04148 * 179.97438 * 4 3 2 6 6 N 1.36031 * 120.86026 * 0.25275 * 5 4 3 7 7 C 1.36669 * 120.88778 * 359.48456 * 6 5 4 8 8 C 1.37980 * 120.32948 * 179.97438 * 3 2 1 9 9 N 1.33329 * 108.60925 * 180.29041 * 7 6 5 10 10 C 1.32330 * 109.85082 * 359.56924 * 9 7 6 11 11 C 1.38501 * 108.25879 * 0.57781 * 10 9 7 12 12 C 1.41657 * 126.78719 * 179.53565 * 11 10 9 13 13 O 1.21800 * 119.99746 * 174.91976 * 12 11 10 14 14 N 1.34770 * 120.00127 * 354.93075 * 12 11 10 15 15 C 1.46497 * 119.99902 * 185.04755 * 14 12 11 16 16 C 1.52997 * 109.47120 * 179.97438 * 15 14 12 17 17 H 1.09000 * 109.47223 * 295.00115 * 16 15 14 18 18 C 1.53000 * 109.47328 * 175.00114 * 16 15 14 19 19 O 1.42908 * 109.47200 * 305.00056 * 18 16 15 20 20 N 1.46499 * 109.47014 * 55.00079 * 16 15 14 21 21 C 1.36946 * 119.99920 * 204.99857 * 20 16 15 22 22 H 1.07999 * 120.00028 * 0.02562 * 21 20 16 23 23 C 1.38810 * 119.99474 * 179.97438 * 21 20 16 24 24 N 1.31624 * 119.99664 * 180.02562 * 23 21 20 25 25 Si 1.86793 * 120.00607 * 0.02562 * 23 21 20 26 26 H 1.48508 * 109.47290 * 89.99747 * 25 23 21 27 27 H 1.48500 * 109.47596 * 209.99800 * 25 23 21 28 28 H 1.48503 * 109.46869 * 329.99970 * 25 23 21 29 29 H 1.09000 * 109.47158 * 300.00110 * 1 2 3 30 30 H 1.09001 * 109.47300 * 59.99563 * 1 2 3 31 31 H 1.08993 * 109.47248 * 179.97438 * 1 2 3 32 32 H 1.07994 * 119.98384 * 359.95928 * 4 3 2 33 33 H 1.08003 * 119.57257 * 179.97438 * 5 4 3 34 34 H 1.08001 * 120.39278 * 359.97438 * 8 3 2 35 35 H 1.08000 * 125.86675 * 180.10096 * 10 9 7 36 36 H 0.97002 * 119.99842 * 5.04197 * 14 12 11 37 37 H 1.08993 * 109.47226 * 299.99702 * 15 14 12 38 38 H 1.09003 * 109.47040 * 59.99720 * 15 14 12 39 39 H 1.08999 * 109.47305 * 64.99801 * 18 16 15 40 40 H 1.09007 * 109.47447 * 185.00140 * 18 16 15 41 41 H 0.96694 * 113.99981 * 179.97438 * 19 18 16 42 42 H 0.96993 * 120.00322 * 25.00095 * 20 16 15 43 43 H 0.97001 * 120.00132 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2085 0.0000 4 6 1.2850 2.3935 0.0005 5 6 1.9041 3.5933 0.0011 6 7 3.2617 3.6780 -0.0041 7 6 4.0350 2.5512 0.0006 8 6 3.4223 1.2887 0.0005 9 7 5.3176 2.9153 0.0003 10 6 5.4100 4.2353 -0.0138 11 6 4.1282 4.7601 -0.0099 12 6 3.7729 6.1313 -0.0120 13 8 2.6027 6.4571 -0.1015 14 7 4.7297 7.0755 0.0846 15 6 4.3566 8.4880 0.1938 16 6 5.6214 9.3436 0.2898 17 1 6.1474 9.1118 1.2159 18 6 5.2373 10.8245 0.2783 19 8 4.4476 11.1029 -0.8798 20 7 6.4932 9.0563 -0.8520 21 6 7.8421 9.2717 -0.7548 22 1 8.2632 9.6531 0.1637 23 6 8.6681 8.9990 -1.8365 24 7 9.9646 9.2056 -1.7430 25 14 7.9398 8.3387 -3.4249 26 1 7.5715 9.4731 -4.3098 27 1 8.9405 7.4815 -4.1096 28 1 6.7282 7.5367 -3.1180 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 0.2063 2.3429 0.0003 33 1 1.3137 4.4977 0.0011 34 1 4.0219 0.3904 0.0014 35 1 6.3272 4.8055 -0.0189 36 1 5.6655 6.8198 0.0820 37 1 3.7848 8.7818 -0.6864 38 1 3.7499 8.6355 1.0872 39 1 4.6626 11.0579 1.1745 40 1 6.1408 11.4341 0.2570 41 1 4.1674 12.0255 -0.9523 42 1 6.1150 8.7134 -1.6767 43 1 10.5419 9.0153 -2.4990 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755632458.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:31 Heat of formation + Delta-G solvation = -8.583617 kcal Electronic energy + Delta-G solvation = -28327.837461 eV Core-core repulsion = 24182.897081 eV Total energy + Delta-G solvation = -4144.940380 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.04066 -40.05001 -39.23653 -37.26027 -36.72910 -35.05930 -33.63770 -33.33980 -31.64995 -30.70608 -29.82087 -28.68455 -27.52261 -25.46227 -24.15148 -23.48512 -23.05951 -22.21309 -20.47966 -20.17517 -18.56049 -18.34997 -17.73729 -17.17762 -16.91276 -16.59675 -16.54064 -15.95890 -15.72031 -15.26301 -14.92931 -14.56245 -14.54259 -14.28791 -13.97220 -13.65679 -13.49285 -13.27595 -13.11086 -12.98889 -12.83699 -12.52192 -12.37099 -11.89024 -11.82664 -11.63497 -11.02337 -10.86553 -10.73706 -10.46621 -10.30374 -10.12460 -9.83015 -9.65159 -9.49343 -9.20474 -9.01319 -8.82093 -7.82787 -7.36389 -5.83444 -3.20328 0.39411 0.63508 2.12233 2.18703 2.59530 3.21953 3.37602 3.43415 3.45903 3.46673 3.55504 4.04584 4.17780 4.28766 4.55764 4.55855 4.64018 4.64519 4.75293 4.79366 4.96557 4.97936 5.18860 5.24377 5.31531 5.35236 5.44904 5.56455 5.61950 5.77999 5.89247 5.90267 5.95611 6.18331 6.31179 6.35980 6.58155 6.64493 6.72514 6.78966 7.54885 7.75241 7.89566 8.08544 8.34753 8.35951 9.13010 9.85653 10.05204 11.34062 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.015761 B = 0.002919 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.119606 B = 9588.932623 C =10721.326578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.305 6.305 3 C 0.155 3.845 4 C -0.219 4.219 5 C 0.123 3.877 6 N -0.340 5.340 7 C 0.278 3.722 8 C -0.145 4.145 9 N -0.498 5.498 10 C 0.121 3.879 11 C -0.149 4.149 12 C 0.596 3.404 13 O -0.569 6.569 14 N -0.705 5.705 15 C 0.119 3.881 16 C 0.171 3.829 17 H 0.076 0.924 18 C 0.059 3.941 19 O -0.565 6.565 20 N -0.739 5.739 21 C -0.252 4.252 22 H 0.091 0.909 23 C 0.012 3.988 24 N -0.929 5.929 25 Si 0.883 3.117 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.276 1.276 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.105 0.895 32 H 0.160 0.840 33 H 0.182 0.818 34 H 0.162 0.838 35 H 0.197 0.803 36 H 0.410 0.590 37 H 0.078 0.922 38 H 0.066 0.934 39 H 0.031 0.969 40 H 0.055 0.945 41 H 0.366 0.634 42 H 0.366 0.634 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.376 -13.330 6.256 25.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.216 6.216 3 C 0.103 3.897 4 C -0.240 4.240 5 C -0.003 4.003 6 N -0.012 5.012 7 C 0.038 3.962 8 C -0.166 4.166 9 N -0.218 5.218 10 C -0.038 4.038 11 C -0.261 4.261 12 C 0.385 3.615 13 O -0.451 6.451 14 N -0.356 5.356 15 C -0.005 4.005 16 C 0.060 3.940 17 H 0.094 0.906 18 C -0.022 4.022 19 O -0.369 6.369 20 N -0.382 5.382 21 C -0.381 4.381 22 H 0.109 0.891 23 C -0.185 4.185 24 N -0.576 5.576 25 Si 0.713 3.287 26 H -0.211 1.211 27 H -0.218 1.218 28 H -0.202 1.202 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.123 0.877 32 H 0.178 0.822 33 H 0.199 0.801 34 H 0.180 0.820 35 H 0.213 0.787 36 H 0.247 0.753 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.049 0.951 40 H 0.073 0.927 41 H 0.211 0.789 42 H 0.200 0.800 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -20.102 -14.358 6.196 25.468 hybrid contribution -0.898 0.891 -1.148 1.708 sum -21.000 -13.467 5.048 25.453 Atomic orbital electron populations 1.23191 0.77528 1.04614 1.01798 1.86045 1.21964 1.25575 1.88022 1.18849 0.91559 0.84480 0.94822 1.21071 1.01620 0.90461 1.10869 1.21841 0.81670 1.00726 0.96014 1.42592 1.05951 1.08110 1.44563 1.20627 0.86953 0.86775 1.01808 1.19365 0.91278 0.94954 1.11020 1.70615 1.13907 1.13169 1.24097 1.23393 0.95891 0.90339 0.94167 1.19861 0.89787 0.88866 1.27631 1.15329 0.85730 0.83361 0.77118 1.90768 1.18315 1.83308 1.52751 1.45662 1.09874 1.06707 1.73336 1.21621 0.97799 0.78715 1.02349 1.20579 0.89602 0.90579 0.93192 0.90627 1.22998 0.93725 0.99399 0.86059 1.86520 1.72639 1.31443 1.46286 1.42738 1.04503 1.78952 1.11994 1.19032 0.81028 1.37799 1.00290 0.89106 1.24637 0.95144 1.01048 0.97657 1.69698 1.02588 1.53972 1.31366 0.86588 0.78139 0.78965 0.84991 1.21109 1.21764 1.20222 0.92160 0.92160 0.87675 0.82246 0.80056 0.82024 0.78656 0.75282 0.90390 0.91569 0.95106 0.92681 0.78859 0.80040 0.92939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.82 101.05 0.99 1.09 16 2 O -0.30 -2.49 10.49 -18.62 -0.20 -2.68 16 3 C 0.16 1.49 6.72 -38.72 -0.26 1.23 16 4 C -0.22 -1.86 8.98 -39.78 -0.36 -2.22 16 5 C 0.12 1.40 10.49 -16.84 -0.18 1.22 16 6 N -0.34 -4.84 2.97 -60.19 -0.18 -5.02 16 7 C 0.28 3.97 7.76 -155.99 -1.21 2.76 16 8 C -0.14 -1.67 10.09 -38.89 -0.39 -2.06 16 9 N -0.50 -7.86 11.25 -12.31 -0.14 -8.00 16 10 C 0.12 1.83 11.32 -17.24 -0.20 1.64 16 11 C -0.15 -2.34 6.83 -83.39 -0.57 -2.91 16 12 C 0.60 10.00 7.59 -14.96 -0.11 9.88 16 13 O -0.57 -10.53 15.35 5.10 0.08 -10.45 16 14 N -0.70 -11.42 5.36 -63.21 -0.34 -11.76 16 15 C 0.12 1.95 5.12 -4.05 -0.02 1.93 16 16 C 0.17 3.01 2.84 -67.93 -0.19 2.82 16 17 H 0.08 1.28 8.08 -51.93 -0.42 0.86 16 18 C 0.06 0.95 6.86 37.16 0.25 1.21 16 19 O -0.57 -9.19 12.64 -35.23 -0.45 -9.63 16 20 N -0.74 -16.23 4.31 -53.43 -0.23 -16.46 16 21 C -0.25 -6.60 10.41 -15.06 -0.16 -6.75 16 22 H 0.09 2.53 8.06 -52.49 -0.42 2.10 16 23 C 0.01 0.33 5.50 -17.43 -0.10 0.23 16 24 N -0.93 -28.17 13.97 55.49 0.78 -27.40 16 25 Si 0.88 21.97 27.74 -169.99 -4.71 17.25 16 26 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 27 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 28 H -0.28 -6.54 6.52 56.52 0.37 -6.17 16 29 H 0.06 0.18 7.68 -51.93 -0.40 -0.22 16 30 H 0.06 0.19 7.68 -51.93 -0.40 -0.21 16 31 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.16 0.78 6.39 -52.49 -0.34 0.45 16 33 H 0.18 2.00 6.79 -52.48 -0.36 1.64 16 34 H 0.16 1.63 8.06 -52.49 -0.42 1.21 16 35 H 0.20 2.56 7.37 -52.49 -0.39 2.17 16 36 H 0.41 6.53 6.92 -40.82 -0.28 6.24 16 37 H 0.08 1.43 7.39 -51.93 -0.38 1.04 16 38 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.05 0.97 8.14 -51.92 -0.42 0.54 16 41 H 0.37 4.20 9.12 45.56 0.42 4.61 16 42 H 0.37 8.42 5.66 -40.82 -0.23 8.19 16 43 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 365.23 15.07 5.50 5.50 Total: -1.00 -35.44 365.23 -6.86 -42.30 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: -4.48 Total: 16.28 kcal Atomic # 6 Polarization: 12.55 SS G_CDS: -2.50 Total: 10.06 kcal Atomic # 7 Polarization: -68.53 SS G_CDS: -0.11 Total: -68.64 kcal Atomic # 8 Polarization: -22.20 SS G_CDS: -0.56 Total: -22.76 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.71 Total: 17.25 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.44 -6.86 -42.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755632458.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.720 kcal (2) G-P(sol) polarization free energy of solvation -35.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds