Wall clock time and date at job start Tue Mar 31 2020 17:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35639 * 117.00096 * 2 1 4 4 C 1.40759 * 120.33030 * 0.02562 * 3 2 1 5 5 C 1.35011 * 120.04148 * 179.97438 * 4 3 2 6 6 N 1.36031 * 120.86026 * 0.25275 * 5 4 3 7 7 C 1.36669 * 120.88778 * 359.48456 * 6 5 4 8 8 C 1.37980 * 120.32948 * 179.97438 * 3 2 1 9 9 N 1.33329 * 108.60925 * 180.29041 * 7 6 5 10 10 C 1.32330 * 109.85082 * 359.56924 * 9 7 6 11 11 C 1.38501 * 108.25879 * 0.57781 * 10 9 7 12 12 C 1.41657 * 126.78719 * 179.53565 * 11 10 9 13 13 O 1.21800 * 119.99746 * 174.91976 * 12 11 10 14 14 N 1.34770 * 120.00127 * 354.93075 * 12 11 10 15 15 C 1.46497 * 119.99902 * 185.04755 * 14 12 11 16 16 C 1.52997 * 109.47120 * 179.97438 * 15 14 12 17 17 H 1.09000 * 109.47223 * 295.00115 * 16 15 14 18 18 C 1.53000 * 109.47328 * 175.00114 * 16 15 14 19 19 O 1.42908 * 109.47200 * 305.00056 * 18 16 15 20 20 N 1.46499 * 109.47014 * 55.00079 * 16 15 14 21 21 C 1.36946 * 119.99920 * 204.99857 * 20 16 15 22 22 H 1.07999 * 120.00028 * 0.02562 * 21 20 16 23 23 C 1.38810 * 119.99474 * 179.97438 * 21 20 16 24 24 N 1.31624 * 119.99664 * 180.02562 * 23 21 20 25 25 Si 1.86793 * 120.00607 * 0.02562 * 23 21 20 26 26 H 1.48508 * 109.47290 * 89.99747 * 25 23 21 27 27 H 1.48500 * 109.47596 * 209.99800 * 25 23 21 28 28 H 1.48503 * 109.46869 * 329.99970 * 25 23 21 29 29 H 1.09000 * 109.47158 * 300.00110 * 1 2 3 30 30 H 1.09001 * 109.47300 * 59.99563 * 1 2 3 31 31 H 1.08993 * 109.47248 * 179.97438 * 1 2 3 32 32 H 1.07994 * 119.98384 * 359.95928 * 4 3 2 33 33 H 1.08003 * 119.57257 * 179.97438 * 5 4 3 34 34 H 1.08001 * 120.39278 * 359.97438 * 8 3 2 35 35 H 1.08000 * 125.86675 * 180.10096 * 10 9 7 36 36 H 0.97002 * 119.99842 * 5.04197 * 14 12 11 37 37 H 1.08993 * 109.47226 * 299.99702 * 15 14 12 38 38 H 1.09003 * 109.47040 * 59.99720 * 15 14 12 39 39 H 1.08999 * 109.47305 * 64.99801 * 18 16 15 40 40 H 1.09007 * 109.47447 * 185.00140 * 18 16 15 41 41 H 0.96694 * 113.99981 * 179.97438 * 19 18 16 42 42 H 0.96993 * 120.00322 * 25.00095 * 20 16 15 43 43 H 0.97001 * 120.00132 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2085 0.0000 4 6 1.2850 2.3935 0.0005 5 6 1.9041 3.5933 0.0011 6 7 3.2617 3.6780 -0.0041 7 6 4.0350 2.5512 0.0006 8 6 3.4223 1.2887 0.0005 9 7 5.3176 2.9153 0.0003 10 6 5.4100 4.2353 -0.0138 11 6 4.1282 4.7601 -0.0099 12 6 3.7729 6.1313 -0.0120 13 8 2.6027 6.4571 -0.1015 14 7 4.7297 7.0755 0.0846 15 6 4.3566 8.4880 0.1938 16 6 5.6214 9.3436 0.2898 17 1 6.1474 9.1118 1.2159 18 6 5.2373 10.8245 0.2783 19 8 4.4476 11.1029 -0.8798 20 7 6.4932 9.0563 -0.8520 21 6 7.8421 9.2717 -0.7548 22 1 8.2632 9.6531 0.1637 23 6 8.6681 8.9990 -1.8365 24 7 9.9646 9.2056 -1.7430 25 14 7.9398 8.3387 -3.4249 26 1 7.5715 9.4731 -4.3098 27 1 8.9405 7.4815 -4.1096 28 1 6.7282 7.5367 -3.1180 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 0.2063 2.3429 0.0003 33 1 1.3137 4.4977 0.0011 34 1 4.0219 0.3904 0.0014 35 1 6.3272 4.8055 -0.0189 36 1 5.6655 6.8198 0.0820 37 1 3.7848 8.7818 -0.6864 38 1 3.7499 8.6355 1.0872 39 1 4.6626 11.0579 1.1745 40 1 6.1408 11.4341 0.2570 41 1 4.1674 12.0255 -0.9523 42 1 6.1150 8.7134 -1.6767 43 1 10.5419 9.0153 -2.4990 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755632458.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:30 Heat of formation + Delta-G solvation = -37.231147 kcal Electronic energy + Delta-G solvation = -28329.079711 eV Core-core repulsion = 24182.897081 eV Total energy + Delta-G solvation = -4146.182630 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.04161 -40.89807 -40.37557 -38.66229 -37.61362 -36.43867 -35.26436 -34.28404 -33.44415 -31.64742 -31.11281 -29.95783 -28.14207 -26.61625 -25.35437 -24.98140 -24.30442 -23.15106 -21.71147 -21.57442 -20.02880 -19.26463 -19.05819 -18.25996 -18.07462 -17.63596 -17.49801 -17.08347 -16.67321 -16.49232 -16.07114 -15.90869 -15.82628 -15.38791 -15.07098 -15.00926 -14.79807 -14.53133 -14.36781 -14.32372 -14.17964 -13.54757 -13.22093 -13.13205 -12.84977 -12.72136 -12.61357 -12.40822 -12.32603 -11.87737 -11.77003 -11.58710 -11.12850 -11.10179 -10.97713 -10.72468 -10.17941 -10.08452 -9.31112 -8.81179 -7.99290 -5.31150 -0.51015 -0.30758 1.11989 1.17265 1.39178 1.42216 1.47218 1.96314 2.24209 2.29490 2.35215 2.49728 3.19472 3.31534 3.33335 3.40948 3.48556 3.72205 3.77897 3.83786 3.91641 3.96707 4.22311 4.32783 4.41610 4.42359 4.47207 4.54852 4.63163 4.71892 4.79739 4.81022 4.84909 4.99689 5.08720 5.19573 5.25355 5.42945 5.75230 5.81060 6.10952 6.24482 6.40937 6.55429 7.04386 7.09006 7.11267 7.85766 8.04140 9.21659 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.015761 B = 0.002919 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.119606 B = 9588.932623 C =10721.326578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.313 6.313 3 C 0.177 3.823 4 C -0.192 4.192 5 C 0.101 3.899 6 N -0.346 5.346 7 C 0.271 3.729 8 C -0.167 4.167 9 N -0.531 5.531 10 C 0.120 3.880 11 C -0.177 4.177 12 C 0.599 3.401 13 O -0.591 6.591 14 N -0.705 5.705 15 C 0.132 3.868 16 C 0.165 3.835 17 H 0.084 0.916 18 C 0.066 3.934 19 O -0.584 6.584 20 N -0.741 5.741 21 C -0.218 4.218 22 H 0.070 0.930 23 C -0.052 4.052 24 N -0.979 5.979 25 Si 0.941 3.059 26 H -0.290 1.290 27 H -0.300 1.300 28 H -0.259 1.259 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.125 0.875 32 H 0.203 0.797 33 H 0.184 0.816 34 H 0.170 0.830 35 H 0.205 0.795 36 H 0.411 0.589 37 H 0.061 0.939 38 H 0.086 0.914 39 H 0.071 0.929 40 H 0.035 0.965 41 H 0.388 0.612 42 H 0.363 0.637 43 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.952 -14.673 6.677 28.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.224 6.224 3 C 0.123 3.877 4 C -0.212 4.212 5 C -0.024 4.024 6 N -0.018 5.018 7 C 0.033 3.967 8 C -0.189 4.189 9 N -0.251 5.251 10 C -0.040 4.040 11 C -0.288 4.288 12 C 0.389 3.611 13 O -0.475 6.475 14 N -0.356 5.356 15 C 0.008 3.992 16 C 0.056 3.944 17 H 0.102 0.898 18 C -0.015 4.015 19 O -0.391 6.391 20 N -0.384 5.384 21 C -0.349 4.349 22 H 0.088 0.912 23 C -0.244 4.244 24 N -0.630 5.630 25 Si 0.771 3.229 26 H -0.217 1.217 27 H -0.227 1.227 28 H -0.184 1.184 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.143 0.857 32 H 0.220 0.780 33 H 0.201 0.799 34 H 0.187 0.813 35 H 0.222 0.778 36 H 0.248 0.752 37 H 0.080 0.920 38 H 0.105 0.895 39 H 0.088 0.912 40 H 0.054 0.946 41 H 0.236 0.764 42 H 0.196 0.804 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -23.768 -15.696 6.648 29.248 hybrid contribution -0.040 1.161 -1.166 1.645 sum -23.809 -14.535 5.483 28.428 Atomic orbital electron populations 1.23615 0.74961 1.06623 1.03312 1.86074 1.24533 1.24600 1.87167 1.18914 0.91065 0.85518 0.92178 1.21522 1.03494 0.88774 1.07440 1.22170 0.80709 1.02045 0.97473 1.42677 1.06864 1.07528 1.44712 1.20965 0.86776 0.87637 1.01358 1.19549 0.92577 0.94216 1.12516 1.70573 1.15208 1.13468 1.25851 1.23579 0.96284 0.90430 0.93737 1.19699 0.90350 0.88751 1.30039 1.15413 0.85361 0.83781 0.76528 1.90737 1.19007 1.83688 1.54065 1.45639 1.09867 1.06672 1.73410 1.21480 0.96834 0.78436 1.02494 1.20854 0.89567 0.92202 0.91763 0.89827 1.22799 0.93757 0.97206 0.87719 1.86465 1.72509 1.33614 1.46499 1.42724 1.03390 1.79043 1.13216 1.19017 0.82741 1.34316 0.98780 0.91174 1.25237 0.95429 1.03017 1.00735 1.69838 1.04024 1.56976 1.32116 0.85628 0.77715 0.78134 0.81453 1.21736 1.22670 1.18390 0.90491 0.90680 0.85706 0.77994 0.79908 0.81280 0.77812 0.75224 0.92017 0.89544 0.91151 0.94622 0.76381 0.80445 0.93525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.03 9.82 113.37 1.11 1.14 16 2 O -0.31 -4.03 10.49 -89.53 -0.94 -4.96 16 3 C 0.18 2.91 6.72 22.83 0.15 3.06 16 4 C -0.19 -2.62 8.98 22.14 0.20 -2.43 16 5 C 0.10 2.13 10.49 83.30 0.87 3.00 16 6 N -0.35 -9.70 2.97 -344.34 -1.02 -10.72 16 7 C 0.27 7.70 7.76 133.86 1.04 8.74 16 8 C -0.17 -3.66 10.09 22.72 0.23 -3.43 16 9 N -0.53 -17.06 11.25 -192.85 -2.17 -19.23 16 10 C 0.12 3.70 11.32 84.68 0.96 4.66 16 11 C -0.18 -5.55 6.83 38.98 0.27 -5.28 16 12 C 0.60 19.91 7.59 85.09 0.65 20.55 16 13 O -0.59 -21.48 15.35 -4.67 -0.07 -21.55 16 14 N -0.71 -22.41 5.36 -472.08 -2.53 -24.95 16 15 C 0.13 4.10 5.12 86.38 0.44 4.54 16 16 C 0.16 5.56 2.84 44.99 0.13 5.69 16 17 H 0.08 2.72 8.08 -2.39 -0.02 2.70 16 18 C 0.07 1.97 6.86 71.98 0.49 2.47 16 19 O -0.58 -17.77 12.64 -148.98 -1.88 -19.65 16 20 N -0.74 -32.02 4.31 -322.94 -1.39 -33.42 16 21 C -0.22 -11.46 10.41 84.03 0.87 -10.59 16 22 H 0.07 3.96 8.06 -2.91 -0.02 3.94 16 23 C -0.05 -2.97 5.50 84.86 0.47 -2.50 16 24 N -0.98 -60.95 13.97 21.65 0.30 -60.65 16 25 Si 0.94 46.08 27.74 68.60 1.90 47.98 16 26 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 27 H -0.30 -14.98 7.11 99.48 0.71 -14.27 16 28 H -0.26 -11.75 6.52 99.48 0.65 -11.11 16 29 H 0.08 0.07 7.68 -2.39 -0.02 0.05 16 30 H 0.07 0.10 7.68 -2.39 -0.02 0.08 16 31 H 0.12 0.02 8.14 -2.39 -0.02 0.00 16 32 H 0.20 0.93 6.39 -2.91 -0.02 0.91 16 33 H 0.18 3.77 6.79 -2.91 -0.02 3.75 16 34 H 0.17 3.30 8.06 -2.91 -0.02 3.28 16 35 H 0.21 5.52 7.37 -2.91 -0.02 5.50 16 36 H 0.41 12.97 6.92 -92.71 -0.64 12.33 16 37 H 0.06 2.17 7.39 -2.39 -0.02 2.15 16 38 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 39 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.04 1.21 8.14 -2.38 -0.02 1.19 16 41 H 0.39 7.98 9.12 -74.06 -0.68 7.31 16 42 H 0.36 16.30 5.66 -92.71 -0.52 15.77 16 43 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -78.33 365.23 -0.73 -79.06 By element: Atomic # 1 Polarization: 39.28 SS G_CDS: -0.81 Total: 38.47 kcal Atomic # 6 Polarization: 21.74 SS G_CDS: 7.88 Total: 29.62 kcal Atomic # 7 Polarization: -142.15 SS G_CDS: -6.81 Total: -148.96 kcal Atomic # 8 Polarization: -43.27 SS G_CDS: -2.89 Total: -46.17 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 1.90 Total: 47.98 kcal Total: -78.33 -0.73 -79.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755632458.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.827 kcal (2) G-P(sol) polarization free energy of solvation -78.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds