Wall clock time and date at job start Tue Mar 31 2020 18:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 120.00088 * 2 1 4 4 H 1.48501 * 109.46867 * 270.00094 * 3 2 1 5 5 H 1.48507 * 109.46736 * 29.99927 * 3 2 1 6 6 H 1.48491 * 109.47223 * 150.00075 * 3 2 1 7 7 C 1.38811 * 119.99905 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99945 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00230 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99991 * 179.97438 * 9 7 2 11 11 H 1.08992 * 109.47397 * 34.99744 * 10 9 7 12 12 C 1.53000 * 109.46840 * 274.99409 * 10 9 7 13 13 C 1.52997 * 109.47060 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47317 * 59.99960 * 13 12 10 15 15 C 1.53005 * 109.47159 * 300.00546 * 14 13 12 16 16 C 1.52997 * 109.47452 * 59.99536 * 15 14 13 17 17 H 1.09002 * 109.46695 * 59.99734 * 16 15 14 18 18 N 1.46492 * 109.47244 * 180.02562 * 16 15 14 19 19 C 1.34780 * 119.99930 * 274.99857 * 18 16 15 20 20 O 1.21284 * 120.00068 * 0.02562 * 19 18 16 21 21 C 1.50701 * 120.00162 * 179.97438 * 19 18 16 22 22 H 1.08997 * 115.54503 * 34.41794 * 21 19 18 23 23 C 1.53004 * 117.49728 * 248.74836 * 21 19 18 24 24 C 1.53001 * 117.49764 * 180.08893 * 21 19 18 25 25 H 1.08993 * 117.50224 * 359.97225 * 24 21 19 26 26 C 1.50702 * 117.49364 * 214.97877 * 24 21 19 27 27 C 1.38425 * 122.53723 * 120.00475 * 26 24 21 28 28 C 1.33390 * 114.91901 * 179.97438 * 27 26 24 29 29 S 1.75884 * 109.59448 * 359.97438 * 28 27 26 30 30 C 1.33390 * 122.54160 * 299.70709 * 26 24 21 31 31 H 0.97001 * 119.99978 * 359.97438 * 1 2 3 32 32 H 0.97002 * 119.99599 * 359.97438 * 9 7 2 33 33 H 1.09002 * 109.47398 * 300.00326 * 12 10 9 34 34 H 1.09001 * 109.47194 * 60.00507 * 12 10 9 35 35 H 1.08996 * 109.47853 * 180.02562 * 13 12 10 36 36 H 1.09002 * 109.47153 * 300.00319 * 13 12 10 37 37 H 1.09000 * 109.47486 * 180.02562 * 14 13 12 38 38 H 1.09002 * 109.46716 * 60.00091 * 14 13 12 39 39 H 1.09002 * 109.46935 * 299.99411 * 15 14 13 40 40 H 1.09001 * 109.46812 * 179.97438 * 15 14 13 41 41 H 0.96998 * 120.00353 * 95.00142 * 18 16 15 42 42 H 1.08993 * 117.50189 * 359.97438 * 23 21 19 43 43 H 1.09006 * 117.49222 * 145.02020 * 23 21 19 44 44 H 1.08000 * 122.54186 * 359.97438 * 27 26 24 45 45 H 1.07998 * 125.20067 * 179.97438 * 28 27 26 46 46 H 1.08002 * 125.20061 * 0.03401 * 30 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9688 -3.5506 0.5899 12 6 2.4218 -4.0356 -1.4365 13 6 3.1863 -5.3609 -1.4366 14 6 2.3087 -6.4560 -0.8271 15 6 1.9449 -6.0771 0.6100 16 6 1.1804 -4.7518 0.6101 17 1 0.2697 -4.8577 0.0205 18 7 0.8326 -4.3888 1.9860 19 6 -0.2855 -4.8852 2.5518 20 8 -1.0034 -5.6327 1.9219 21 6 -0.6430 -4.5122 3.9675 22 1 -0.3773 -3.4987 4.2679 23 6 -0.5575 -5.6096 5.0302 24 6 -1.9237 -5.1101 4.5535 25 1 -2.5078 -5.7728 3.9151 26 6 -2.7208 -4.2528 5.5026 27 6 -4.0332 -3.8894 5.2542 28 6 -4.5935 -3.1286 6.1958 29 16 -3.4326 -2.8333 7.4837 30 6 -2.2171 -3.7914 6.6483 31 1 -0.4850 0.8401 0.0004 32 1 0.3556 -2.3881 0.0005 33 1 1.5111 -4.1419 -2.0259 34 1 3.0468 -3.2553 -1.8709 35 1 3.4459 -5.6307 -2.4603 36 1 4.0970 -5.2551 -0.8471 37 1 2.8535 -7.4001 -0.8268 38 1 1.3980 -6.5618 -1.4166 39 1 2.8556 -5.9713 1.1995 40 1 1.3193 -6.8571 1.0440 41 1 1.4069 -3.7912 2.4899 42 1 -0.2430 -6.6014 4.7054 43 1 -0.2358 -5.3179 6.0300 44 1 -4.5634 -4.1984 4.3655 45 1 -5.6053 -2.7516 6.1711 46 1 -1.2154 -3.9764 7.0072 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085243321.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:34 Heat of formation + Delta-G solvation = 17.339802 kcal Electronic energy + Delta-G solvation = -26398.570423 eV Core-core repulsion = 22801.047381 eV Total energy + Delta-G solvation = -3597.523042 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.11722 -38.87249 -37.67920 -35.43158 -34.04011 -33.66792 -31.14640 -29.64121 -29.16449 -27.74122 -25.33830 -24.21589 -23.67720 -21.84672 -21.40570 -21.03288 -19.95687 -19.26356 -18.62013 -18.09540 -17.24619 -16.67175 -16.06939 -15.45932 -15.05306 -14.58980 -14.35233 -14.01552 -13.76655 -13.62998 -13.47420 -13.24356 -12.96256 -12.86768 -12.76344 -12.59407 -12.18416 -12.15727 -12.05538 -11.79881 -11.09003 -10.92666 -10.87997 -10.84431 -10.75902 -10.70257 -10.55475 -10.50087 -10.31838 -10.17473 -9.76077 -9.64410 -9.47458 -8.92903 -8.85855 -8.54876 -8.36117 -6.99342 -5.78722 -3.08565 0.90095 1.57099 1.88500 2.46204 2.89737 3.40529 3.45830 3.47758 3.52118 3.97134 4.54439 4.57289 4.76011 4.87679 4.91342 5.06694 5.13078 5.16159 5.25259 5.32327 5.38199 5.50816 5.52354 5.55178 5.62147 5.71967 5.81528 5.82096 5.89906 5.94245 5.96286 5.98194 6.11713 6.11860 6.28323 6.32722 6.44681 6.45783 6.48709 6.52335 6.58661 6.86561 6.92084 7.09890 7.66518 7.96487 8.38381 8.62704 9.50142 10.06756 10.41936 11.43182 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.008902 B = 0.003512 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3144.758424 B = 7971.746623 C =10508.165556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.010 4.010 3 Si 0.904 3.096 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.722 5.722 10 C 0.173 3.827 11 H 0.050 0.950 12 C -0.133 4.133 13 C -0.119 4.119 14 C -0.114 4.114 15 C -0.123 4.123 16 C 0.141 3.859 17 H 0.083 0.917 18 N -0.701 5.701 19 C 0.545 3.455 20 O -0.551 6.551 21 C -0.171 4.171 22 H 0.126 0.874 23 C -0.145 4.145 24 C -0.065 4.065 25 H 0.127 0.873 26 C -0.065 4.065 27 C -0.122 4.122 28 C -0.211 4.211 29 S 0.087 5.913 30 C -0.214 4.214 31 H 0.255 0.745 32 H 0.385 0.615 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.054 0.946 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.404 0.596 42 H 0.103 0.897 43 H 0.103 0.897 44 H 0.143 0.857 45 H 0.164 0.836 46 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.811 -12.218 12.034 17.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.206 4.206 3 Si 0.735 3.265 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.372 4.372 8 H 0.088 0.912 9 N -0.362 5.362 10 C 0.063 3.937 11 H 0.068 0.932 12 C -0.174 4.174 13 C -0.157 4.157 14 C -0.152 4.152 15 C -0.162 4.162 16 C 0.036 3.964 17 H 0.101 0.899 18 N -0.350 5.350 19 C 0.331 3.669 20 O -0.430 6.430 21 C -0.193 4.193 22 H 0.144 0.856 23 C -0.183 4.183 24 C -0.086 4.086 25 H 0.145 0.855 26 C -0.077 4.077 27 C -0.152 4.152 28 C -0.346 4.346 29 S 0.350 5.650 30 C -0.349 4.349 31 H 0.065 0.935 32 H 0.219 0.781 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.238 0.762 42 H 0.122 0.878 43 H 0.121 0.879 44 H 0.161 0.839 45 H 0.182 0.818 46 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -2.264 -11.740 12.986 17.652 hybrid contribution 0.465 0.747 -1.233 1.515 sum -1.799 -10.993 11.753 16.193 Atomic orbital electron populations 1.69674 1.05082 1.25636 1.57270 1.24730 0.95423 0.97588 1.02889 0.86246 0.78635 0.84079 0.77529 1.21757 1.21848 1.20798 1.19198 0.90891 0.84023 1.43135 0.91227 1.42418 1.05817 0.99470 1.88527 1.20458 0.93903 0.85799 0.93563 0.93207 1.22224 0.99948 0.95514 0.99749 1.21579 0.98514 0.95697 0.99960 1.21474 0.99899 0.97998 0.95819 1.21867 0.99957 0.97275 0.97122 1.21299 0.98983 0.93963 0.82196 0.89861 1.45810 1.24933 1.49028 1.15182 1.19461 0.80606 0.79905 0.86921 1.90654 1.50967 1.37276 1.64121 1.22393 1.03519 1.00369 0.92985 0.85619 1.23076 0.99252 0.98141 0.97824 1.20702 0.88795 1.00015 0.99046 0.85497 1.18214 0.94376 1.00212 0.94883 1.20076 0.94612 0.99966 1.00570 1.25573 1.03758 1.06544 0.98752 1.84205 1.04684 1.51702 1.24362 1.25415 1.03769 1.05894 0.99839 0.93507 0.78126 0.92472 0.91615 0.92697 0.92402 0.92416 0.91983 0.92065 0.92009 0.76171 0.87843 0.87892 0.83915 0.81818 0.81851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.68 13.06 55.49 0.72 -26.95 16 2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 3 Si 0.90 21.95 29.55 -169.99 -5.02 16.92 16 4 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.24 -6.40 9.93 -15.06 -0.15 -6.55 16 8 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 9 N -0.72 -17.25 4.95 -53.43 -0.26 -17.51 16 10 C 0.17 3.25 2.29 -67.93 -0.16 3.10 16 11 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 12 C -0.13 -2.31 5.50 -26.73 -0.15 -2.46 16 13 C -0.12 -1.63 5.92 -26.73 -0.16 -1.79 16 14 C -0.11 -1.48 5.92 -26.73 -0.16 -1.64 16 15 C -0.12 -1.74 5.49 -26.73 -0.15 -1.89 16 16 C 0.14 2.39 1.97 -67.94 -0.13 2.26 16 17 H 0.08 1.63 7.58 -51.93 -0.39 1.24 16 18 N -0.70 -11.44 4.91 -53.81 -0.26 -11.71 16 19 C 0.55 9.08 7.58 -10.98 -0.08 8.99 16 20 O -0.55 -10.78 15.92 5.55 0.09 -10.69 16 21 C -0.17 -2.30 5.85 -91.77 -0.54 -2.84 16 22 H 0.13 1.68 8.14 -51.93 -0.42 1.26 16 23 C -0.15 -1.53 9.63 -26.69 -0.26 -1.78 16 24 C -0.06 -0.81 5.66 -91.73 -0.52 -1.33 16 25 H 0.13 1.72 7.67 -51.93 -0.40 1.32 16 26 C -0.06 -0.78 5.52 -106.25 -0.59 -1.36 16 27 C -0.12 -1.43 9.98 -41.21 -0.41 -1.84 16 28 C -0.21 -2.21 11.23 29.04 0.33 -1.88 16 29 S 0.09 0.88 23.34 -107.50 -2.51 -1.63 16 30 C -0.21 -2.30 10.39 29.04 0.30 -2.00 16 31 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.38 10.21 7.80 -40.82 -0.32 9.89 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.40 6.28 8.60 -40.82 -0.35 5.93 16 42 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.10 0.86 6.54 -51.93 -0.34 0.52 16 44 H 0.14 1.56 8.06 -52.49 -0.42 1.13 16 45 H 0.16 1.34 8.06 -52.49 -0.42 0.91 16 46 H 0.16 1.44 6.63 -52.49 -0.35 1.10 16 LS Contribution 388.01 15.07 5.85 5.85 Total: -1.00 -30.87 388.01 -11.50 -42.38 By element: Atomic # 1 Polarization: 23.91 SS G_CDS: -7.19 Total: 16.72 kcal Atomic # 6 Polarization: -10.46 SS G_CDS: -2.91 Total: -13.38 kcal Atomic # 7 Polarization: -56.37 SS G_CDS: 0.20 Total: -56.17 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.09 Total: -10.69 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Atomic # 16 Polarization: 0.88 SS G_CDS: -2.51 Total: -1.63 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.87 -11.50 -42.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085243321.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.716 kcal (2) G-P(sol) polarization free energy of solvation -30.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds