Wall clock time and date at job start Tue Mar 31 2020 18:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86799 * 119.99884 * 2 1 4 4 H 1.48501 * 109.47088 * 239.99870 * 3 2 1 5 5 H 1.48502 * 109.47049 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47108 * 120.00062 * 3 2 1 7 7 C 1.38946 * 119.99983 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99983 * 179.97438 * 7 2 1 9 9 N 1.37097 * 120.00002 * 0.02562 * 7 2 1 10 10 C 1.34780 * 120.00035 * 179.97438 * 9 7 2 11 11 O 1.21299 * 119.99768 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00283 * 180.02562 * 10 9 7 13 13 N 1.46905 * 109.47165 * 180.02562 * 12 10 9 14 14 C 1.48560 * 110.99577 * 169.99909 * 13 12 10 15 15 C 1.54378 * 104.69549 * 200.89794 * 14 13 12 16 16 H 1.08992 * 117.60697 * 244.77557 * 15 14 13 17 17 C 1.54571 * 104.91190 * 23.88545 * 15 14 13 18 18 H 1.09003 * 123.03342 * 221.58107 * 17 15 14 19 19 C 1.48555 * 110.99889 * 54.58389 * 13 12 10 20 20 C 1.53001 * 59.72402 * 114.05907 * 17 15 14 21 21 H 1.08998 * 117.44287 * 252.31455 * 20 17 15 22 22 N 1.46506 * 117.44176 * 107.60971 * 20 17 15 23 23 C 1.34779 * 119.99868 * 154.99762 * 22 20 17 24 24 O 1.21282 * 119.99818 * 0.02562 * 23 22 20 25 25 C 1.50690 * 120.00082 * 179.97438 * 23 22 20 26 26 N 1.46498 * 109.47538 * 180.02562 * 25 23 22 27 27 N 1.28607 * 124.61883 * 269.70157 * 26 25 23 28 28 C 1.31377 * 108.71734 * 179.82783 * 27 26 25 29 29 C 1.39677 * 105.89922 * 0.41121 * 28 27 26 30 30 N 1.28597 * 124.62068 * 89.99375 * 26 25 23 31 31 H 0.96992 * 119.99972 * 0.02562 * 1 2 3 32 32 H 0.96997 * 120.00431 * 0.02562 * 9 7 2 33 33 H 1.09000 * 109.46851 * 60.00107 * 12 10 9 34 34 H 1.08997 * 109.46905 * 300.00243 * 12 10 9 35 35 H 1.09002 * 110.41441 * 319.73871 * 14 13 12 36 36 H 1.09002 * 110.41248 * 82.06172 * 14 13 12 37 37 H 1.09005 * 110.41154 * 277.81401 * 19 13 12 38 38 H 1.08995 * 110.41948 * 40.25485 * 19 13 12 39 39 H 0.96993 * 120.00189 * 334.99694 * 22 20 17 40 40 H 1.09000 * 109.47399 * 300.00598 * 25 23 22 41 41 H 1.09004 * 109.47460 * 60.00262 * 25 23 22 42 42 H 1.07995 * 127.04990 * 180.16338 * 28 27 26 43 43 H 1.08005 * 127.04848 * 179.72850 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7465 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2103 -3.5578 0.0001 12 6 1.2439 -4.8630 0.0000 13 7 2.1985 -5.9795 0.0007 14 6 1.5061 -7.2717 0.2410 15 6 2.6141 -8.2223 0.7431 16 1 2.8663 -9.0787 0.1180 17 6 3.7001 -7.2922 1.3304 18 1 4.7670 -7.4521 1.1745 19 6 3.1545 -5.8618 1.1317 20 6 2.9210 -8.2410 2.2435 21 1 2.1823 -7.8003 2.9129 22 7 3.6336 -9.4074 2.7709 23 6 3.2272 -9.9824 3.9201 24 8 2.2713 -9.5346 4.5173 25 6 3.9598 -11.1824 4.4624 26 7 3.3283 -11.6172 5.7108 27 7 3.6590 -11.1989 6.8811 28 6 2.8923 -11.7870 7.7712 29 6 2.0452 -12.6306 7.0489 30 7 2.3715 -12.4730 5.7861 31 1 -0.4850 0.8400 -0.0004 32 1 0.3534 -2.3907 -0.0002 33 1 0.6176 -4.9205 -0.8903 34 1 0.6169 -4.9209 0.8896 35 1 0.7335 -7.1535 1.0008 36 1 1.0727 -7.6488 -0.6853 37 1 3.9641 -5.1784 0.8756 38 1 2.6399 -5.5229 2.0308 39 1 4.3978 -9.7657 2.2931 40 1 3.9197 -11.9924 3.7341 41 1 4.9996 -10.9174 4.6540 42 1 2.9153 -11.6498 8.8421 43 1 1.2791 -13.2796 7.4469 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114334607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:06 Heat of formation + Delta-G solvation = 99.932197 kcal Electronic energy + Delta-G solvation = -27318.183049 eV Core-core repulsion = 23210.241019 eV Total energy + Delta-G solvation = -4107.942030 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.154 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.85373 -40.60017 -39.47330 -37.98302 -35.28728 -34.20396 -33.92974 -32.71581 -32.68269 -31.26259 -28.97686 -28.27640 -27.43067 -24.76007 -23.21796 -23.20139 -22.00027 -21.19166 -20.74991 -20.33940 -19.17320 -18.18691 -18.00076 -17.84669 -16.89381 -16.18164 -16.09054 -15.85353 -15.22061 -15.04613 -14.97400 -14.70664 -14.54255 -14.22339 -13.79327 -13.54625 -13.52873 -13.12358 -12.96594 -12.42297 -12.13175 -11.94936 -11.88221 -11.57090 -11.37651 -11.25704 -11.10689 -11.04245 -10.90273 -10.69245 -10.61799 -10.45259 -10.24426 -10.11357 -9.64321 -9.51081 -9.11128 -8.44133 -8.06919 -7.95733 -6.43884 -3.85004 1.36166 1.76501 1.95803 2.21047 2.59236 3.18578 3.24782 3.28816 3.50464 3.79236 3.85922 3.92014 4.06152 4.22420 4.32208 4.43825 4.54996 4.56026 4.73547 4.75502 4.97039 5.04606 5.15568 5.23054 5.27983 5.47842 5.60190 5.66130 5.69303 5.75396 5.86682 5.89350 5.98310 6.02323 6.19103 6.22907 6.27634 6.57413 6.90311 7.08749 7.20151 7.52952 7.61771 8.00066 8.02884 8.58402 9.15020 9.50701 10.01934 10.73613 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.021101 B = 0.001845 C = 0.001780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.662984 B =15171.522113 C =15728.901956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.023 3.977 3 Si 0.932 3.068 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.301 4.301 8 H 0.103 0.897 9 N -0.560 5.560 10 C 0.441 3.559 11 O -0.582 6.582 12 C 0.033 3.967 13 N -0.486 5.486 14 C 0.058 3.942 15 C -0.167 4.167 16 H 0.119 0.881 17 C -0.160 4.160 18 H 0.120 0.880 19 C 0.064 3.936 20 C 0.102 3.898 21 H 0.133 0.867 22 N -0.692 5.692 23 C 0.505 3.495 24 O -0.514 6.514 25 C 0.125 3.875 26 N -0.147 5.147 27 N -0.281 5.281 28 C -0.023 4.023 29 C -0.023 4.023 30 N -0.282 5.282 31 H 0.273 0.727 32 H 0.393 0.607 33 H 0.093 0.907 34 H 0.050 0.950 35 H 0.046 0.954 36 H 0.087 0.913 37 H 0.124 0.876 38 H 0.040 0.960 39 H 0.405 0.595 40 H 0.139 0.861 41 H 0.140 0.860 42 H 0.199 0.801 43 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.170 -25.779 8.669 27.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.179 4.179 3 Si 0.759 3.241 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.430 4.430 8 H 0.121 0.879 9 N -0.196 5.196 10 C 0.227 3.773 11 O -0.467 6.467 12 C -0.098 4.098 13 N -0.210 5.210 14 C -0.070 4.070 15 C -0.188 4.188 16 H 0.137 0.863 17 C -0.180 4.180 18 H 0.138 0.862 19 C -0.063 4.063 20 C -0.004 4.004 21 H 0.151 0.849 22 N -0.342 5.342 23 C 0.289 3.711 24 O -0.388 6.388 25 C 0.001 3.999 26 N -0.047 5.047 27 N -0.121 5.121 28 C -0.206 4.206 29 C -0.206 4.206 30 N -0.122 5.122 31 H 0.082 0.918 32 H 0.226 0.774 33 H 0.111 0.889 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.106 0.894 37 H 0.142 0.858 38 H 0.058 0.942 39 H 0.240 0.760 40 H 0.157 0.843 41 H 0.158 0.842 42 H 0.216 0.784 43 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 6.005 -24.833 7.400 26.599 hybrid contribution -0.816 0.402 1.274 1.565 sum 5.190 -24.432 8.673 26.440 Atomic orbital electron populations 1.69604 1.05951 1.28349 1.50244 1.25280 0.95648 0.99784 0.97204 0.85905 0.78761 0.80398 0.79075 1.19857 1.20959 1.19900 1.19653 0.93347 0.82166 1.47840 0.87899 1.41841 1.09235 1.04563 1.63967 1.19670 0.88337 0.84617 0.84688 1.90442 1.13687 1.86775 1.55800 1.22104 0.94610 0.91235 1.01875 1.65415 1.13493 1.00076 1.42041 1.22699 0.94317 0.89719 1.00237 1.23976 0.99024 1.00856 0.94908 0.86269 1.24114 0.97814 0.93447 1.02620 0.86167 1.22885 0.98284 0.93374 0.91735 1.21892 0.98747 0.88213 0.91508 0.84900 1.45097 1.33765 1.31134 1.24211 1.20456 0.84931 0.84611 0.81150 1.90822 1.27010 1.62975 1.57967 1.21632 0.98008 0.97863 0.82444 1.47269 1.23982 1.28041 1.05400 1.74069 1.24807 1.21779 0.91476 1.24822 0.96299 0.98439 1.01027 1.24815 1.03563 1.03826 0.88425 1.74045 1.05070 1.09936 1.23166 0.91758 0.77408 0.88916 0.93175 0.93631 0.89430 0.85837 0.94198 0.75982 0.84280 0.84227 0.78407 0.78415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.48 13.05 55.50 0.72 -23.76 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 21.01 29.55 -169.99 -5.02 15.99 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.30 -8.33 9.68 -14.93 -0.14 -8.47 16 8 H 0.10 2.97 7.16 -52.48 -0.38 2.59 16 9 N -0.56 -14.14 5.29 -10.96 -0.06 -14.20 16 10 C 0.44 10.31 7.50 -10.98 -0.08 10.23 16 11 O -0.58 -15.21 13.24 5.54 0.07 -15.14 16 12 C 0.03 0.60 5.55 -4.97 -0.03 0.57 16 13 N -0.49 -8.05 5.34 -231.41 -1.23 -9.28 16 14 C 0.06 0.75 6.28 -2.18 -0.01 0.74 16 15 C -0.17 -1.82 7.08 -88.99 -0.63 -2.45 16 16 H 0.12 1.06 8.14 -51.93 -0.42 0.64 16 17 C -0.16 -1.92 7.05 -89.07 -0.63 -2.55 16 18 H 0.12 1.24 8.14 -51.93 -0.42 0.82 16 19 C 0.06 1.06 5.11 -2.19 -0.01 1.05 16 20 C 0.10 1.13 5.97 -67.85 -0.41 0.73 16 21 H 0.13 1.82 7.40 -51.93 -0.38 1.44 16 22 N -0.69 -5.50 5.56 -53.73 -0.30 -5.80 16 23 C 0.51 5.05 7.90 -10.99 -0.09 4.96 16 24 O -0.51 -7.94 16.00 5.56 0.09 -7.85 16 25 C 0.13 0.82 7.02 -5.20 -0.04 0.78 16 26 N -0.15 -1.54 3.44 -11.66 -0.04 -1.58 16 27 N -0.28 -3.12 12.05 30.67 0.37 -2.75 16 28 C -0.02 -0.19 12.20 -17.21 -0.21 -0.40 16 29 C -0.02 -0.20 12.20 -17.21 -0.21 -0.41 16 30 N -0.28 -3.07 12.05 30.68 0.37 -2.70 16 31 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 32 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 33 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 34 H 0.05 0.84 7.88 -51.93 -0.41 0.43 16 35 H 0.05 0.58 7.82 -51.93 -0.41 0.18 16 36 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.12 2.42 6.05 -51.93 -0.31 2.10 16 38 H 0.04 0.69 8.00 -51.93 -0.42 0.27 16 39 H 0.41 1.67 8.83 -40.82 -0.36 1.31 16 40 H 0.14 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.14 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.20 0.94 8.06 -52.49 -0.42 0.52 16 43 H 0.20 0.90 8.06 -52.48 -0.42 0.48 16 LS Contribution 370.22 15.07 5.58 5.58 Total: -1.00 -37.54 370.22 -7.54 -45.07 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -5.50 Total: 11.13 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: -2.58 Total: 5.29 kcal Atomic # 7 Polarization: -59.90 SS G_CDS: -0.17 Total: -60.07 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: 0.16 Total: -22.99 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -37.54 -7.54 -45.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114334607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.006 kcal (2) G-P(sol) polarization free energy of solvation -37.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds