Wall clock time and date at job start Tue Mar 31 2020 18:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86799 * 119.99884 * 2 1 4 4 H 1.48501 * 109.47088 * 239.99870 * 3 2 1 5 5 H 1.48502 * 109.47049 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47108 * 120.00062 * 3 2 1 7 7 C 1.38946 * 119.99983 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99983 * 179.97438 * 7 2 1 9 9 N 1.37097 * 120.00002 * 0.02562 * 7 2 1 10 10 C 1.34780 * 120.00035 * 179.97438 * 9 7 2 11 11 O 1.21299 * 119.99768 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00283 * 180.02562 * 10 9 7 13 13 N 1.46905 * 109.47165 * 180.02562 * 12 10 9 14 14 C 1.48560 * 110.99577 * 169.99909 * 13 12 10 15 15 C 1.54378 * 104.69549 * 200.89794 * 14 13 12 16 16 H 1.08992 * 117.60697 * 244.77557 * 15 14 13 17 17 C 1.54571 * 104.91190 * 23.88545 * 15 14 13 18 18 H 1.09003 * 123.03342 * 221.58107 * 17 15 14 19 19 C 1.48555 * 110.99889 * 54.58389 * 13 12 10 20 20 C 1.53001 * 59.72402 * 114.05907 * 17 15 14 21 21 H 1.08998 * 117.44287 * 252.31455 * 20 17 15 22 22 N 1.46506 * 117.44176 * 107.60971 * 20 17 15 23 23 C 1.34779 * 119.99868 * 154.99762 * 22 20 17 24 24 O 1.21282 * 119.99818 * 0.02562 * 23 22 20 25 25 C 1.50690 * 120.00082 * 179.97438 * 23 22 20 26 26 N 1.46498 * 109.47538 * 180.02562 * 25 23 22 27 27 N 1.28607 * 124.61883 * 269.70157 * 26 25 23 28 28 C 1.31377 * 108.71734 * 179.82783 * 27 26 25 29 29 C 1.39677 * 105.89922 * 0.41121 * 28 27 26 30 30 N 1.28597 * 124.62068 * 89.99375 * 26 25 23 31 31 H 0.96992 * 119.99972 * 0.02562 * 1 2 3 32 32 H 0.96997 * 120.00431 * 0.02562 * 9 7 2 33 33 H 1.09000 * 109.46851 * 60.00107 * 12 10 9 34 34 H 1.08997 * 109.46905 * 300.00243 * 12 10 9 35 35 H 1.09002 * 110.41441 * 319.73871 * 14 13 12 36 36 H 1.09002 * 110.41248 * 82.06172 * 14 13 12 37 37 H 1.09005 * 110.41154 * 277.81401 * 19 13 12 38 38 H 1.08995 * 110.41948 * 40.25485 * 19 13 12 39 39 H 0.96993 * 120.00189 * 334.99694 * 22 20 17 40 40 H 1.09000 * 109.47399 * 300.00598 * 25 23 22 41 41 H 1.09004 * 109.47460 * 60.00262 * 25 23 22 42 42 H 1.07995 * 127.04990 * 180.16338 * 28 27 26 43 43 H 1.08005 * 127.04848 * 179.72850 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7465 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2103 -3.5578 0.0001 12 6 1.2439 -4.8630 0.0000 13 7 2.1985 -5.9795 0.0007 14 6 1.5061 -7.2717 0.2410 15 6 2.6141 -8.2223 0.7431 16 1 2.8663 -9.0787 0.1180 17 6 3.7001 -7.2922 1.3304 18 1 4.7670 -7.4521 1.1745 19 6 3.1545 -5.8618 1.1317 20 6 2.9210 -8.2410 2.2435 21 1 2.1823 -7.8003 2.9129 22 7 3.6336 -9.4074 2.7709 23 6 3.2272 -9.9824 3.9201 24 8 2.2713 -9.5346 4.5173 25 6 3.9598 -11.1824 4.4624 26 7 3.3283 -11.6172 5.7108 27 7 3.6590 -11.1989 6.8811 28 6 2.8923 -11.7870 7.7712 29 6 2.0452 -12.6306 7.0489 30 7 2.3715 -12.4730 5.7861 31 1 -0.4850 0.8400 -0.0004 32 1 0.3534 -2.3907 -0.0002 33 1 0.6176 -4.9205 -0.8903 34 1 0.6169 -4.9209 0.8896 35 1 0.7335 -7.1535 1.0008 36 1 1.0727 -7.6488 -0.6853 37 1 3.9641 -5.1784 0.8756 38 1 2.6399 -5.5229 2.0308 39 1 4.3978 -9.7657 2.2931 40 1 3.9197 -11.9924 3.7341 41 1 4.9996 -10.9174 4.6540 42 1 2.9153 -11.6498 8.8421 43 1 1.2791 -13.2796 7.4469 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001114334607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:05 Heat of formation + Delta-G solvation = 67.764669 kcal Electronic energy + Delta-G solvation = -27319.577938 eV Core-core repulsion = 23210.241019 eV Total energy + Delta-G solvation = -4109.336919 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.154 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.48960 -41.59360 -40.60587 -39.63443 -36.49510 -35.81479 -34.84202 -33.75565 -33.39414 -33.26085 -29.78799 -29.41304 -28.76074 -26.56450 -24.26321 -23.82572 -22.96940 -22.11384 -21.59190 -21.42661 -20.95653 -19.86597 -18.91733 -18.67528 -17.82440 -17.57776 -16.95550 -16.72935 -16.62185 -16.38636 -16.25866 -15.69614 -15.68163 -15.34620 -15.14906 -14.97500 -14.76056 -14.19957 -13.95765 -13.60365 -13.47054 -13.30796 -13.18423 -12.94956 -12.58603 -12.56414 -12.46306 -12.42577 -12.13303 -12.00693 -11.80680 -11.54826 -11.49438 -11.33243 -11.11756 -10.28969 -10.26116 -10.05003 -9.92798 -9.44386 -8.48817 -5.97873 0.69142 1.21658 1.22260 1.38000 1.40088 1.51241 1.60761 1.88212 2.00189 2.26462 2.57022 2.81560 3.17691 3.24814 3.30369 3.37742 3.58081 3.64716 3.78261 3.97805 4.02090 4.08281 4.16704 4.23443 4.23538 4.39480 4.46928 4.51362 4.56803 4.59934 4.73314 4.92725 5.05089 5.07881 5.20175 5.31382 5.33520 5.38714 5.65309 5.76267 5.83735 6.03736 6.27168 6.57006 6.96012 7.09565 7.34912 7.51761 8.06965 8.68373 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.021101 B = 0.001845 C = 0.001780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.662984 B =15171.522113 C =15728.901956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.014 4.014 3 Si 0.995 3.005 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.334 4.334 8 H 0.081 0.919 9 N -0.572 5.572 10 C 0.439 3.561 11 O -0.613 6.613 12 C 0.044 3.956 13 N -0.499 5.499 14 C 0.054 3.946 15 C -0.146 4.146 16 H 0.153 0.847 17 C -0.160 4.160 18 H 0.142 0.858 19 C 0.063 3.937 20 C 0.108 3.892 21 H 0.102 0.898 22 N -0.671 5.671 23 C 0.505 3.495 24 O -0.576 6.576 25 C 0.123 3.877 26 N -0.159 5.159 27 N -0.314 5.314 28 C -0.027 4.027 29 C -0.026 4.026 30 N -0.310 5.310 31 H 0.278 0.722 32 H 0.396 0.604 33 H 0.115 0.885 34 H 0.064 0.936 35 H 0.044 0.956 36 H 0.109 0.891 37 H 0.086 0.914 38 H 0.019 0.981 39 H 0.428 0.572 40 H 0.176 0.824 41 H 0.172 0.828 42 H 0.229 0.771 43 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.616 -27.917 8.461 29.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.214 4.214 3 Si 0.818 3.182 4 H -0.195 1.195 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.463 4.463 8 H 0.099 0.901 9 N -0.209 5.209 10 C 0.226 3.774 11 O -0.499 6.499 12 C -0.087 4.087 13 N -0.224 5.224 14 C -0.073 4.073 15 C -0.167 4.167 16 H 0.170 0.830 17 C -0.180 4.180 18 H 0.160 0.840 19 C -0.065 4.065 20 C 0.001 3.999 21 H 0.120 0.880 22 N -0.323 5.323 23 C 0.290 3.710 24 O -0.454 6.454 25 C 0.000 4.000 26 N -0.059 5.059 27 N -0.155 5.155 28 C -0.210 4.210 29 C -0.208 4.208 30 N -0.151 5.151 31 H 0.087 0.913 32 H 0.229 0.771 33 H 0.133 0.867 34 H 0.081 0.919 35 H 0.062 0.938 36 H 0.127 0.873 37 H 0.105 0.895 38 H 0.038 0.962 39 H 0.267 0.733 40 H 0.193 0.807 41 H 0.189 0.811 42 H 0.245 0.755 43 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 6.479 -27.008 7.154 28.681 hybrid contribution -0.969 1.020 1.378 1.970 sum 5.510 -25.988 8.533 27.902 Atomic orbital electron populations 1.69671 1.06885 1.29413 1.50157 1.26080 0.96572 1.02533 0.96223 0.84966 0.77739 0.76517 0.78981 1.19542 1.19517 1.19739 1.19642 0.92757 0.83878 1.50026 0.90089 1.41920 1.09317 1.04722 1.64920 1.20649 0.88316 0.85904 0.82523 1.90435 1.15402 1.87603 1.56490 1.21994 0.94404 0.88852 1.03489 1.65422 1.13746 1.01008 1.42184 1.22829 0.94798 0.88236 1.01470 1.24072 0.97042 1.00792 0.94746 0.82967 1.23934 0.99088 0.90878 1.04146 0.84029 1.22660 0.97188 0.95752 0.90869 1.21525 0.98148 0.88908 0.91346 0.87976 1.44882 1.33895 1.29708 1.23784 1.21121 0.84136 0.85004 0.80705 1.90799 1.29913 1.64970 1.59757 1.22020 0.98515 0.97235 0.82223 1.47600 1.24185 1.28120 1.05982 1.74023 1.26157 1.22876 0.92395 1.25444 0.95548 0.97648 1.02313 1.25450 1.03781 1.03789 0.87825 1.73997 1.05815 1.10808 1.24456 0.91272 0.77062 0.86727 0.91855 0.93755 0.87261 0.89541 0.96242 0.73278 0.80658 0.81060 0.75474 0.75308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.29 13.05 21.66 0.28 -50.00 16 2 C -0.01 -0.77 5.50 84.92 0.47 -0.31 16 3 Si 0.99 43.28 29.55 68.60 2.03 45.30 16 4 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 6 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 7 C -0.33 -19.08 9.68 84.04 0.81 -18.27 16 8 H 0.08 4.90 7.16 -2.91 -0.02 4.87 16 9 N -0.57 -29.81 5.29 -306.98 -1.62 -31.43 16 10 C 0.44 21.15 7.50 87.66 0.66 21.80 16 11 O -0.61 -33.44 13.24 -3.09 -0.04 -33.48 16 12 C 0.04 1.58 5.55 85.56 0.47 2.05 16 13 N -0.50 -16.32 5.34 -886.06 -4.73 -21.05 16 14 C 0.05 1.28 6.28 86.45 0.54 1.83 16 15 C -0.15 -2.80 7.08 -9.74 -0.07 -2.87 16 16 H 0.15 1.99 8.14 -2.39 -0.02 1.97 16 17 C -0.16 -3.67 7.05 -9.79 -0.07 -3.74 16 18 H 0.14 2.63 8.14 -2.39 -0.02 2.61 16 19 C 0.06 2.13 5.11 86.45 0.44 2.58 16 20 C 0.11 2.26 5.97 45.04 0.27 2.53 16 21 H 0.10 2.88 7.40 -2.39 -0.02 2.86 16 22 N -0.67 -9.17 5.56 -442.29 -2.46 -11.63 16 23 C 0.50 9.44 7.90 87.65 0.69 10.13 16 24 O -0.58 -18.02 16.00 -3.04 -0.05 -18.06 16 25 C 0.12 1.33 7.02 85.63 0.60 1.93 16 26 N -0.16 -3.12 3.44 -190.82 -0.66 -3.78 16 27 N -0.31 -6.71 12.05 -56.87 -0.69 -7.39 16 28 C -0.03 -0.42 12.20 85.11 1.04 0.61 16 29 C -0.03 -0.40 12.20 85.11 1.04 0.64 16 30 N -0.31 -6.40 12.05 -56.86 -0.69 -7.08 16 31 H 0.28 14.24 8.31 -92.71 -0.77 13.47 16 32 H 0.40 19.70 7.90 -92.71 -0.73 18.97 16 33 H 0.11 3.62 8.14 -2.39 -0.02 3.60 16 34 H 0.06 2.11 7.88 -2.39 -0.02 2.09 16 35 H 0.04 1.08 7.82 -2.39 -0.02 1.07 16 36 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.09 3.58 6.05 -2.38 -0.01 3.56 16 38 H 0.02 0.71 8.00 -2.39 -0.02 0.69 16 39 H 0.43 1.98 8.83 -92.71 -0.82 1.16 16 40 H 0.18 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.17 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.23 1.76 8.06 -2.91 -0.02 1.73 16 43 H 0.23 1.60 8.06 -2.91 -0.02 1.58 16 Total: -1.00 -86.20 370.22 -2.19 -88.39 By element: Atomic # 1 Polarization: 31.75 SS G_CDS: -0.47 Total: 31.28 kcal Atomic # 6 Polarization: 12.04 SS G_CDS: 6.90 Total: 18.94 kcal Atomic # 7 Polarization: -121.81 SS G_CDS: -10.55 Total: -132.37 kcal Atomic # 8 Polarization: -51.46 SS G_CDS: -0.09 Total: -51.54 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal Total: -86.20 -2.19 -88.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114334607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.152 kcal (2) G-P(sol) polarization free energy of solvation -86.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds