Wall clock time and date at job start Tue Mar 31 2020 20:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.33385 * 125.20454 * 2 1 4 4 C 1.38427 * 114.92079 * 179.75400 * 3 2 1 5 5 C 1.33386 * 114.92015 * 0.42687 * 4 3 2 6 6 C 1.50702 * 125.20173 * 179.85688 * 5 4 3 7 7 H 1.08994 * 115.55139 * 334.05399 * 6 5 4 8 8 C 1.53003 * 117.49652 * 188.34413 * 6 5 4 9 9 C 1.53002 * 60.00043 * 252.51107 * 8 6 5 10 10 H 1.09007 * 117.51194 * 107.47638 * 9 8 6 11 11 C 1.50696 * 117.50354 * 252.50904 * 9 8 6 12 12 O 1.21283 * 119.99663 * 68.62220 * 11 9 8 13 13 N 1.34775 * 120.00360 * 248.62155 * 11 9 8 14 14 C 1.46496 * 120.00045 * 179.97438 * 13 11 9 15 15 C 1.53038 * 109.45916 * 155.00440 * 14 13 11 16 16 C 1.53187 * 109.31573 * 181.38622 * 15 14 13 17 17 N 1.46931 * 108.77577 * 305.36540 * 16 15 14 18 18 C 1.36938 * 120.62849 * 233.58910 * 17 16 15 19 19 H 1.07997 * 120.00372 * 27.79813 * 18 17 16 20 20 C 1.38812 * 119.99502 * 208.07937 * 18 17 16 21 21 N 1.31619 * 120.00059 * 17.10182 * 20 18 17 22 22 Si 1.86801 * 119.99733 * 197.10121 * 20 18 17 23 23 H 1.48497 * 109.47160 * 359.97438 * 22 20 18 24 24 H 1.48492 * 109.47064 * 120.00133 * 22 20 18 25 25 H 1.48500 * 109.46761 * 239.99750 * 22 20 18 26 26 C 1.46926 * 118.73728 * 53.85626 * 17 16 15 27 27 C 1.53043 * 109.46007 * 275.06910 * 14 13 11 28 28 S 1.75885 * 125.20096 * 179.97438 * 2 1 3 29 29 H 1.09007 * 109.47168 * 270.02502 * 1 2 3 30 30 H 1.09003 * 109.47443 * 30.02307 * 1 2 3 31 31 H 1.08998 * 109.47437 * 150.02428 * 1 2 3 32 32 H 1.07998 * 122.54018 * 359.97438 * 3 2 1 33 33 H 1.08004 * 122.53813 * 180.27194 * 4 3 2 34 34 H 1.08998 * 117.49470 * 145.02522 * 8 6 5 35 35 H 1.08997 * 117.50099 * 0.02562 * 8 6 5 36 36 H 0.97007 * 119.99591 * 0.02562 * 13 11 9 37 37 H 1.08991 * 109.46025 * 35.03223 * 14 13 11 38 38 H 1.09002 * 109.49965 * 61.43078 * 15 14 13 39 39 H 1.09003 * 109.52199 * 301.35145 * 15 14 13 40 40 H 1.09002 * 109.58926 * 185.57376 * 16 15 14 41 41 H 1.09003 * 109.58960 * 65.14960 * 16 15 14 42 42 H 0.97000 * 119.99847 * 180.02562 * 21 20 18 43 43 H 1.08993 * 109.58437 * 65.92961 * 26 17 16 44 44 H 1.08998 * 109.58280 * 186.35814 * 26 17 16 45 45 H 1.09000 * 109.49517 * 298.56571 * 27 14 13 46 46 H 1.08993 * 109.49698 * 58.63345 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 3.6379 0.8428 0.0054 5 6 3.9750 -0.4478 0.0008 6 6 5.3860 -0.9771 0.0019 7 1 6.1378 -0.3126 -0.4237 8 6 5.5762 -2.4817 -0.2009 9 6 5.8082 -1.8603 1.1779 10 1 5.0654 -2.0581 1.9508 11 6 7.2317 -1.7451 1.6587 12 8 7.9943 -0.9735 1.1165 13 7 7.6575 -2.4995 2.6912 14 6 9.0415 -2.3879 3.1582 15 6 9.1201 -2.8132 4.6262 16 6 10.5620 -2.6624 5.1209 17 7 11.4504 -3.4163 4.2259 18 6 12.3180 -4.3494 4.7277 19 1 12.0833 -4.8658 5.6468 20 6 13.5017 -4.6274 4.0582 21 7 13.9579 -3.7887 3.1522 22 14 14.4472 -6.1918 4.4430 23 1 13.7286 -6.9592 5.4917 24 1 14.5592 -7.0175 3.2139 25 1 15.8058 -5.8419 4.9298 26 6 11.3945 -3.1457 2.7828 27 6 9.9393 -3.2952 2.3137 28 16 2.5208 -1.4372 0.0006 29 1 -0.3634 0.0004 1.0277 30 1 -0.3634 0.8898 -0.5142 31 1 -0.3634 -0.8902 -0.5134 32 1 1.8669 2.0894 -0.0004 33 1 4.3720 1.6350 0.0103 34 1 6.4533 -2.8071 -0.7602 35 1 4.6809 -3.0885 -0.3356 36 1 7.0476 -3.1169 3.1246 37 1 9.3753 -1.3549 3.0611 38 1 8.8101 -3.8540 4.7206 39 1 8.4625 -2.1821 5.2240 40 1 10.6439 -3.0563 6.1340 41 1 10.8430 -1.6092 5.1124 42 1 14.7849 -3.9831 2.6841 43 1 11.7419 -2.1313 2.5876 44 1 12.0258 -3.8588 2.2527 45 1 9.6215 -4.3314 2.4300 46 1 9.8644 -3.0071 1.2653 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001003762487.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:21 Heat of formation + Delta-G solvation = 32.032730 kcal Electronic energy + Delta-G solvation = -25539.540138 eV Core-core repulsion = 21942.654229 eV Total energy + Delta-G solvation = -3596.885909 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.10713 -38.50177 -37.57518 -36.34711 -34.39171 -32.23257 -32.00177 -30.06292 -29.52073 -27.42147 -25.50190 -24.00277 -23.40316 -22.26546 -22.07133 -21.54190 -20.04707 -19.38229 -19.18998 -17.29512 -17.05318 -16.64594 -15.87895 -15.62207 -14.85852 -14.75551 -14.36927 -14.29369 -14.01512 -13.74044 -13.50457 -13.43513 -13.10426 -12.92135 -12.67128 -12.63983 -12.46981 -12.40322 -12.27672 -11.79747 -11.50414 -11.15175 -11.07014 -10.97113 -10.81218 -10.74487 -10.72720 -10.39569 -10.22620 -10.07371 -9.83600 -9.76211 -9.47236 -8.75217 -8.71642 -8.61178 -8.42715 -6.69082 -5.78598 -3.21464 0.64054 1.26652 1.67977 2.36765 2.63483 3.27007 3.37468 3.44934 3.47030 3.71323 4.26965 4.46466 4.49373 4.51931 4.61369 4.86668 4.97163 4.99408 5.10638 5.18481 5.29325 5.34205 5.38600 5.43481 5.45367 5.54204 5.63317 5.68280 5.78175 5.83111 5.91383 6.02524 6.08161 6.23374 6.24070 6.35327 6.43078 6.60777 6.64788 6.76706 6.91438 6.93873 7.37397 7.66961 7.72811 7.79865 8.39998 8.44943 9.20857 9.84152 10.40811 11.29863 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.033945 B = 0.001929 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.677802 B =14513.628754 C =14562.559862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.185 4.185 3 C -0.137 4.137 4 C -0.130 4.130 5 C -0.144 4.144 6 C -0.054 4.054 7 H 0.137 0.863 8 C -0.143 4.143 9 C -0.175 4.175 10 H 0.123 0.877 11 C 0.540 3.460 12 O -0.539 6.539 13 N -0.719 5.719 14 C 0.151 3.849 15 C -0.139 4.139 16 C 0.148 3.852 17 N -0.593 5.593 18 C -0.253 4.253 19 H 0.067 0.933 20 C 0.002 3.998 21 N -0.901 5.901 22 Si 0.902 3.098 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.290 1.290 26 C 0.173 3.827 27 C -0.146 4.146 28 S 0.097 5.903 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.139 0.861 33 H 0.142 0.858 34 H 0.111 0.889 35 H 0.104 0.896 36 H 0.396 0.604 37 H 0.081 0.919 38 H 0.063 0.937 39 H 0.055 0.945 40 H 0.058 0.942 41 H 0.020 0.980 42 H 0.254 0.746 43 H 0.021 0.979 44 H 0.090 0.910 45 H 0.055 0.945 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.139 5.701 -6.270 28.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.303 4.303 3 C -0.167 4.167 4 C -0.160 4.160 5 C -0.261 4.261 6 C -0.075 4.075 7 H 0.155 0.845 8 C -0.181 4.181 9 C -0.197 4.197 10 H 0.141 0.859 11 C 0.326 3.674 12 O -0.416 6.416 13 N -0.368 5.368 14 C 0.048 3.952 15 C -0.179 4.179 16 C 0.021 3.979 17 N -0.315 5.315 18 C -0.383 4.383 19 H 0.084 0.916 20 C -0.197 4.197 21 N -0.546 5.546 22 Si 0.732 3.268 23 H -0.203 1.203 24 H -0.216 1.216 25 H -0.217 1.217 26 C 0.047 3.953 27 C -0.186 4.186 28 S 0.362 5.638 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.156 0.844 33 H 0.159 0.841 34 H 0.130 0.870 35 H 0.122 0.878 36 H 0.229 0.771 37 H 0.099 0.901 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.038 0.962 42 H 0.064 0.936 43 H 0.039 0.961 44 H 0.108 0.892 45 H 0.074 0.926 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -26.701 4.695 -6.724 27.932 hybrid contribution 0.503 0.458 0.418 0.799 sum -26.198 5.153 -6.306 27.434 Atomic orbital electron populations 1.20327 0.87852 1.03108 1.02744 1.24498 0.99932 0.95811 1.10013 1.20063 0.92781 0.99265 1.04577 1.20072 0.96280 0.95977 1.03640 1.23703 0.96307 0.96387 1.09719 1.20478 0.91931 0.94116 1.00974 0.84487 1.23125 1.04109 0.94600 0.96295 1.22450 0.96481 1.07203 0.93518 0.85863 1.19461 0.87620 0.80280 0.80089 1.90713 1.56397 1.37949 1.56542 1.46246 1.14027 1.42420 1.34121 1.21062 0.79301 1.00830 0.94056 1.22334 1.00421 1.00949 0.94149 1.20845 0.87810 0.95014 0.94256 1.44134 1.42663 1.43513 1.01233 1.19222 0.97407 1.12869 1.08803 0.91564 1.25066 0.96125 0.98549 0.99976 1.70046 1.21457 1.34368 1.28683 0.86230 0.79616 0.83311 0.77651 1.20265 1.21570 1.21729 1.20857 0.90201 0.99748 0.84484 1.22632 0.99288 0.98504 0.98212 1.84148 0.96332 1.09454 1.73913 0.90754 0.90547 0.91357 0.84368 0.84073 0.87033 0.87821 0.77090 0.90054 0.91832 0.92646 0.92314 0.96205 0.93624 0.96105 0.89181 0.92646 0.92949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.44 10.38 36.00 0.37 -0.06 16 2 C -0.19 -1.50 6.51 -36.01 -0.23 -1.73 16 3 C -0.14 -1.15 10.05 -41.21 -0.41 -1.57 16 4 C -0.13 -1.24 10.05 -41.21 -0.41 -1.66 16 5 C -0.14 -1.44 6.14 -36.00 -0.22 -1.66 16 6 C -0.05 -0.58 5.73 -91.77 -0.53 -1.11 16 7 H 0.14 1.64 7.67 -51.93 -0.40 1.24 16 8 C -0.14 -1.39 9.75 -26.73 -0.26 -1.65 16 9 C -0.17 -1.90 5.89 -91.77 -0.54 -2.45 16 10 H 0.12 1.13 8.14 -51.92 -0.42 0.71 16 11 C 0.54 7.94 7.58 -10.99 -0.08 7.86 16 12 O -0.54 -10.11 15.92 5.56 0.09 -10.02 16 13 N -0.72 -10.08 5.08 -53.77 -0.27 -10.35 16 14 C 0.15 2.63 2.41 -67.89 -0.16 2.46 16 15 C -0.14 -2.30 5.55 -26.61 -0.15 -2.45 16 16 C 0.15 3.05 6.51 -3.71 -0.02 3.02 16 17 N -0.59 -14.81 2.99 -172.05 -0.51 -15.32 16 18 C -0.25 -6.92 9.58 -15.06 -0.14 -7.06 16 19 H 0.07 1.77 7.89 -52.49 -0.41 1.35 16 20 C 0.00 0.04 4.92 -17.43 -0.09 -0.04 16 21 N -0.90 -26.39 11.18 55.49 0.62 -25.77 16 22 Si 0.90 21.67 29.59 -169.99 -5.03 16.64 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 26 C 0.17 4.24 5.33 -3.48 -0.02 4.22 16 27 C -0.15 -2.92 5.67 -26.38 -0.15 -3.07 16 28 S 0.10 0.84 22.15 -107.50 -2.38 -1.55 16 29 H 0.07 0.35 8.14 -51.92 -0.42 -0.08 16 30 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 33 H 0.14 1.23 8.06 -52.48 -0.42 0.81 16 34 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.10 0.84 7.27 -51.93 -0.38 0.46 16 36 H 0.40 4.37 8.60 -40.82 -0.35 4.02 16 37 H 0.08 1.61 7.58 -51.93 -0.39 1.21 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 43 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.09 2.46 6.04 -51.93 -0.31 2.14 16 45 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 46 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 387.23 15.07 5.84 5.84 Total: -1.00 -31.94 387.23 -12.00 -43.94 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -7.29 Total: 3.55 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: -3.05 Total: -6.95 kcal Atomic # 7 Polarization: -51.28 SS G_CDS: -0.17 Total: -51.45 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.09 Total: -10.02 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.64 kcal Atomic # 16 Polarization: 0.84 SS G_CDS: -2.38 Total: -1.55 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.94 -12.00 -43.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001003762487.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.970 kcal (2) G-P(sol) polarization free energy of solvation -31.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds