Wall clock time and date at job start Tue Mar 31 2020 20:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.33385 * 125.20454 * 2 1 4 4 C 1.38427 * 114.92079 * 179.75400 * 3 2 1 5 5 C 1.33386 * 114.92015 * 0.42687 * 4 3 2 6 6 C 1.50702 * 125.20173 * 179.85688 * 5 4 3 7 7 H 1.08994 * 115.55139 * 334.05399 * 6 5 4 8 8 C 1.53003 * 117.49652 * 188.34413 * 6 5 4 9 9 C 1.53002 * 60.00043 * 252.51107 * 8 6 5 10 10 H 1.09007 * 117.51194 * 107.47638 * 9 8 6 11 11 C 1.50696 * 117.50354 * 252.50904 * 9 8 6 12 12 O 1.21283 * 119.99663 * 68.62220 * 11 9 8 13 13 N 1.34775 * 120.00360 * 248.62155 * 11 9 8 14 14 C 1.46496 * 120.00045 * 179.97438 * 13 11 9 15 15 C 1.53038 * 109.45916 * 155.00440 * 14 13 11 16 16 C 1.53187 * 109.31573 * 181.38622 * 15 14 13 17 17 N 1.46931 * 108.77577 * 305.36540 * 16 15 14 18 18 C 1.36938 * 120.62849 * 233.58910 * 17 16 15 19 19 H 1.07997 * 120.00372 * 27.79813 * 18 17 16 20 20 C 1.38812 * 119.99502 * 208.07937 * 18 17 16 21 21 N 1.31619 * 120.00059 * 17.10182 * 20 18 17 22 22 Si 1.86801 * 119.99733 * 197.10121 * 20 18 17 23 23 H 1.48497 * 109.47160 * 359.97438 * 22 20 18 24 24 H 1.48492 * 109.47064 * 120.00133 * 22 20 18 25 25 H 1.48500 * 109.46761 * 239.99750 * 22 20 18 26 26 C 1.46926 * 118.73728 * 53.85626 * 17 16 15 27 27 C 1.53043 * 109.46007 * 275.06910 * 14 13 11 28 28 S 1.75885 * 125.20096 * 179.97438 * 2 1 3 29 29 H 1.09007 * 109.47168 * 270.02502 * 1 2 3 30 30 H 1.09003 * 109.47443 * 30.02307 * 1 2 3 31 31 H 1.08998 * 109.47437 * 150.02428 * 1 2 3 32 32 H 1.07998 * 122.54018 * 359.97438 * 3 2 1 33 33 H 1.08004 * 122.53813 * 180.27194 * 4 3 2 34 34 H 1.08998 * 117.49470 * 145.02522 * 8 6 5 35 35 H 1.08997 * 117.50099 * 0.02562 * 8 6 5 36 36 H 0.97007 * 119.99591 * 0.02562 * 13 11 9 37 37 H 1.08991 * 109.46025 * 35.03223 * 14 13 11 38 38 H 1.09002 * 109.49965 * 61.43078 * 15 14 13 39 39 H 1.09003 * 109.52199 * 301.35145 * 15 14 13 40 40 H 1.09002 * 109.58926 * 185.57376 * 16 15 14 41 41 H 1.09003 * 109.58960 * 65.14960 * 16 15 14 42 42 H 0.97000 * 119.99847 * 180.02562 * 21 20 18 43 43 H 1.08993 * 109.58437 * 65.92961 * 26 17 16 44 44 H 1.08998 * 109.58280 * 186.35814 * 26 17 16 45 45 H 1.09000 * 109.49517 * 298.56571 * 27 14 13 46 46 H 1.08993 * 109.49698 * 58.63345 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 3.6379 0.8428 0.0054 5 6 3.9750 -0.4478 0.0008 6 6 5.3860 -0.9771 0.0019 7 1 6.1378 -0.3126 -0.4237 8 6 5.5762 -2.4817 -0.2009 9 6 5.8082 -1.8603 1.1779 10 1 5.0654 -2.0581 1.9508 11 6 7.2317 -1.7451 1.6587 12 8 7.9943 -0.9735 1.1165 13 7 7.6575 -2.4995 2.6912 14 6 9.0415 -2.3879 3.1582 15 6 9.1201 -2.8132 4.6262 16 6 10.5620 -2.6624 5.1209 17 7 11.4504 -3.4163 4.2259 18 6 12.3180 -4.3494 4.7277 19 1 12.0833 -4.8658 5.6468 20 6 13.5017 -4.6274 4.0582 21 7 13.9579 -3.7887 3.1522 22 14 14.4472 -6.1918 4.4430 23 1 13.7286 -6.9592 5.4917 24 1 14.5592 -7.0175 3.2139 25 1 15.8058 -5.8419 4.9298 26 6 11.3945 -3.1457 2.7828 27 6 9.9393 -3.2952 2.3137 28 16 2.5208 -1.4372 0.0006 29 1 -0.3634 0.0004 1.0277 30 1 -0.3634 0.8898 -0.5142 31 1 -0.3634 -0.8902 -0.5134 32 1 1.8669 2.0894 -0.0004 33 1 4.3720 1.6350 0.0103 34 1 6.4533 -2.8071 -0.7602 35 1 4.6809 -3.0885 -0.3356 36 1 7.0476 -3.1169 3.1246 37 1 9.3753 -1.3549 3.0611 38 1 8.8101 -3.8540 4.7206 39 1 8.4625 -2.1821 5.2240 40 1 10.6439 -3.0563 6.1340 41 1 10.8430 -1.6092 5.1124 42 1 14.7849 -3.9831 2.6841 43 1 11.7419 -2.1313 2.5876 44 1 12.0258 -3.8588 2.2527 45 1 9.6215 -4.3314 2.4300 46 1 9.8644 -3.0071 1.2653 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001003762487.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:20 Heat of formation + Delta-G solvation = 14.315962 kcal Electronic energy + Delta-G solvation = -25540.308395 eV Core-core repulsion = 21942.654229 eV Total energy + Delta-G solvation = -3597.654165 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.27989 -39.49764 -38.82396 -37.37942 -35.98946 -33.92898 -32.67953 -31.77670 -31.25778 -28.13003 -27.13517 -25.34328 -24.05601 -23.94042 -23.31070 -22.66434 -21.36412 -20.73696 -20.05201 -18.86526 -18.13387 -17.72476 -17.17746 -16.71520 -16.44116 -15.96062 -15.73840 -15.36728 -15.27919 -14.85953 -14.79786 -14.77746 -14.24026 -14.09727 -13.94370 -13.83462 -13.34196 -13.21628 -13.12886 -13.06164 -13.02119 -12.67696 -12.59572 -12.37910 -12.13799 -12.03619 -11.87138 -11.76455 -11.66317 -11.55599 -11.51181 -11.39850 -10.88370 -10.60363 -10.02816 -9.38718 -9.28226 -8.73170 -7.88420 -5.34674 -0.02498 0.62406 1.02465 1.44095 1.46520 1.48150 1.59070 1.76211 2.13043 2.50903 2.83916 3.27301 3.44085 3.57950 3.65283 3.75641 3.85534 3.98884 4.05838 4.08388 4.21088 4.31528 4.43664 4.45887 4.55946 4.64333 4.65964 4.76626 4.77863 4.79681 4.86008 4.87627 4.98814 5.03691 5.06086 5.11663 5.13405 5.26183 5.30075 5.38037 5.44615 5.53538 5.60305 5.63253 5.68422 6.37431 6.58230 7.12163 7.26131 7.82983 8.35764 9.18712 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.033945 B = 0.001929 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.677802 B =14513.628754 C =14562.559862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.184 4.184 3 C -0.151 4.151 4 C -0.138 4.138 5 C -0.164 4.164 6 C -0.058 4.058 7 H 0.116 0.884 8 C -0.129 4.129 9 C -0.171 4.171 10 H 0.149 0.851 11 C 0.538 3.462 12 O -0.585 6.585 13 N -0.705 5.705 14 C 0.161 3.839 15 C -0.121 4.121 16 C 0.140 3.860 17 N -0.609 5.609 18 C -0.260 4.260 19 H 0.075 0.925 20 C -0.056 4.056 21 N -0.939 5.939 22 Si 0.969 3.031 23 H -0.262 1.262 24 H -0.292 1.292 25 H -0.294 1.294 26 C 0.182 3.818 27 C -0.129 4.129 28 S 0.110 5.890 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.155 0.845 33 H 0.140 0.860 34 H 0.104 0.896 35 H 0.126 0.874 36 H 0.416 0.584 37 H 0.055 0.945 38 H 0.076 0.924 39 H 0.090 0.910 40 H 0.068 0.932 41 H 0.010 0.990 42 H 0.249 0.751 43 H -0.012 1.012 44 H 0.056 0.944 45 H 0.063 0.937 46 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.606 4.522 -5.253 31.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.301 4.301 3 C -0.180 4.180 4 C -0.169 4.169 5 C -0.281 4.281 6 C -0.079 4.079 7 H 0.134 0.866 8 C -0.167 4.167 9 C -0.192 4.192 10 H 0.167 0.833 11 C 0.325 3.675 12 O -0.466 6.466 13 N -0.355 5.355 14 C 0.057 3.943 15 C -0.161 4.161 16 C 0.014 3.986 17 N -0.333 5.333 18 C -0.390 4.390 19 H 0.092 0.908 20 C -0.251 4.251 21 N -0.586 5.586 22 Si 0.798 3.202 23 H -0.186 1.186 24 H -0.219 1.219 25 H -0.221 1.221 26 C 0.055 3.945 27 C -0.170 4.170 28 S 0.374 5.626 29 H 0.103 0.897 30 H 0.108 0.892 31 H 0.094 0.906 32 H 0.173 0.827 33 H 0.158 0.842 34 H 0.122 0.878 35 H 0.144 0.856 36 H 0.253 0.747 37 H 0.073 0.927 38 H 0.095 0.905 39 H 0.109 0.891 40 H 0.087 0.913 41 H 0.028 0.972 42 H 0.058 0.942 43 H 0.007 0.993 44 H 0.075 0.925 45 H 0.081 0.919 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -30.230 3.496 -5.670 30.955 hybrid contribution 1.542 0.919 0.094 1.797 sum -28.688 4.415 -5.576 29.556 Atomic orbital electron populations 1.20450 0.85886 1.04155 1.03688 1.24926 1.01287 0.95338 1.08585 1.20251 0.92270 1.00391 1.05108 1.20280 0.97121 0.96055 1.03408 1.23675 0.96368 0.96966 1.11104 1.20356 0.92192 0.94473 1.00834 0.86598 1.23191 1.04616 0.94117 0.94790 1.22377 0.94176 1.08114 0.94537 0.83326 1.20103 0.88845 0.79189 0.79348 1.90703 1.58070 1.39865 1.57929 1.45958 1.12744 1.42736 1.34071 1.20669 0.80675 0.98562 0.94425 1.22133 0.98013 1.02536 0.93384 1.21054 0.89364 0.93910 0.94234 1.44379 1.43141 1.43964 1.01782 1.19614 0.97516 1.13092 1.08757 0.90771 1.25885 0.97406 1.01481 1.00320 1.70217 1.21872 1.36277 1.30188 0.85173 0.77954 0.79623 0.77495 1.18558 1.21885 1.22118 1.20569 0.92444 0.96749 0.84725 1.22369 0.96898 0.99568 0.98125 1.84008 0.95439 1.09406 1.73707 0.89750 0.89246 0.90595 0.82706 0.84218 0.87760 0.85623 0.74723 0.92657 0.90489 0.89111 0.91315 0.97156 0.94183 0.99347 0.92546 0.91860 0.93711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.65 10.38 71.23 0.74 0.09 16 2 C -0.18 -2.55 6.51 24.59 0.16 -2.39 16 3 C -0.15 -2.28 10.05 21.22 0.21 -2.07 16 4 C -0.14 -2.54 10.05 21.22 0.21 -2.33 16 5 C -0.16 -3.10 6.14 24.59 0.15 -2.94 16 6 C -0.06 -1.21 5.73 -11.54 -0.07 -1.28 16 7 H 0.12 2.90 7.67 -2.39 -0.02 2.89 16 8 C -0.13 -2.30 9.75 30.60 0.30 -2.00 16 9 C -0.17 -3.43 5.89 -11.54 -0.07 -3.50 16 10 H 0.15 2.25 8.14 -2.38 -0.02 2.23 16 11 C 0.54 15.36 7.58 87.66 0.66 16.02 16 12 O -0.59 -22.47 15.92 -3.04 -0.05 -22.52 16 13 N -0.70 -18.39 5.08 -442.43 -2.25 -20.64 16 14 C 0.16 5.49 2.41 45.02 0.11 5.60 16 15 C -0.12 -3.72 5.55 30.67 0.17 -3.55 16 16 C 0.14 5.66 6.51 86.36 0.56 6.22 16 17 N -0.61 -30.78 2.99 -698.26 -2.09 -32.87 16 18 C -0.26 -14.22 9.58 84.03 0.81 -13.41 16 19 H 0.07 3.88 7.89 -2.91 -0.02 3.85 16 20 C -0.06 -3.16 4.92 84.86 0.42 -2.74 16 21 N -0.94 -57.08 11.18 21.65 0.24 -56.84 16 22 Si 0.97 45.06 29.59 68.60 2.03 47.09 16 23 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 24 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 25 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 26 C 0.18 9.26 5.33 86.51 0.46 9.72 16 27 C -0.13 -5.22 5.67 30.82 0.17 -5.05 16 28 S 0.11 1.64 22.15 -56.49 -1.25 0.39 16 29 H 0.08 0.53 8.14 -2.38 -0.02 0.51 16 30 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.16 1.71 8.06 -2.91 -0.02 1.69 16 33 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 34 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.13 1.69 7.27 -2.39 -0.02 1.67 16 36 H 0.42 7.73 8.60 -92.70 -0.80 6.93 16 37 H 0.06 2.21 7.58 -2.39 -0.02 2.20 16 38 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.07 2.61 7.93 -2.39 -0.02 2.59 16 41 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 42 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 43 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 44 H 0.06 3.24 6.04 -2.39 -0.01 3.22 16 45 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 46 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -71.89 387.23 1.83 -70.06 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: 0.18 Total: 18.92 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: 5.00 Total: -3.60 kcal Atomic # 7 Polarization: -106.26 SS G_CDS: -4.09 Total: -110.35 kcal Atomic # 8 Polarization: -22.47 SS G_CDS: -0.05 Total: -22.52 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Atomic # 16 Polarization: 1.64 SS G_CDS: -1.25 Total: 0.39 kcal Total: -71.89 1.83 -70.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001003762487.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.381 kcal (2) G-P(sol) polarization free energy of solvation -71.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds