Wall clock time and date at job start Tue Mar 31 2020 20:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33388 * 125.20333 * 2 1 4 4 C 1.38427 * 114.92023 * 180.02562 * 3 2 1 5 5 C 1.33393 * 114.92162 * 0.02562 * 4 3 2 6 6 C 1.50698 * 125.20550 * 179.97438 * 5 4 3 7 7 H 1.08999 * 109.46917 * 359.97438 * 6 5 4 8 8 C 1.52998 * 109.47409 * 119.99523 * 6 5 4 9 9 C 1.50703 * 109.47085 * 239.99819 * 6 5 4 10 10 O 1.21276 * 119.99741 * 274.54913 * 9 6 5 11 11 N 1.34776 * 119.99913 * 94.54260 * 9 6 5 12 12 C 1.47347 * 125.52619 * 354.84022 * 11 9 6 13 13 C 1.54948 * 104.89995 * 156.71348 * 12 11 9 14 14 C 1.54779 * 101.45413 * 37.25823 * 13 12 11 15 15 H 1.08998 * 112.85058 * 85.51167 * 14 13 12 16 16 C 1.53525 * 109.68592 * 212.19255 * 14 13 12 17 17 N 1.48404 * 106.16368 * 84.43258 * 16 14 13 18 18 C 1.36936 * 125.07345 * 197.32399 * 17 16 14 19 19 H 1.08002 * 119.99945 * 359.97438 * 18 17 16 20 20 C 1.38806 * 120.00205 * 179.97438 * 18 17 16 21 21 N 1.31620 * 119.99899 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00502 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47191 * 89.99805 * 22 20 18 24 24 H 1.48498 * 109.47425 * 210.00479 * 22 20 18 25 25 H 1.48508 * 109.46721 * 330.00080 * 22 20 18 26 26 C 1.46490 * 109.63947 * 17.28461 * 17 16 14 27 27 C 1.47261 * 125.52092 * 174.81261 * 11 9 6 28 28 H 1.09001 * 111.94316 * 56.66605 * 27 11 9 29 29 S 1.75886 * 125.20128 * 180.31850 * 2 1 3 30 30 H 1.09004 * 109.46783 * 90.00252 * 1 2 3 31 31 H 1.08998 * 109.47156 * 210.00191 * 1 2 3 32 32 H 1.09006 * 109.46831 * 330.00339 * 1 2 3 33 33 H 1.07996 * 122.54285 * 0.05459 * 3 2 1 34 34 H 1.07992 * 122.53932 * 179.97438 * 4 3 2 35 35 H 1.08994 * 109.47125 * 184.86462 * 8 6 5 36 36 H 1.08996 * 109.47016 * 304.87412 * 8 6 5 37 37 H 1.09005 * 109.46960 * 64.86376 * 8 6 5 38 38 H 1.09005 * 110.35285 * 37.85967 * 12 11 9 39 39 H 1.09002 * 110.35118 * 275.57310 * 12 11 9 40 40 H 1.09001 * 111.02893 * 279.21161 * 13 12 11 41 41 H 1.09001 * 111.02292 * 155.30083 * 13 12 11 42 42 H 1.08995 * 109.91956 * 204.18061 * 16 14 13 43 43 H 1.08997 * 109.91602 * 325.48442 * 16 14 13 44 44 H 0.97002 * 120.00171 * 179.97438 * 21 20 18 45 45 H 1.09004 * 109.71793 * 238.32256 * 26 17 16 46 46 H 1.08998 * 109.67393 * 117.75081 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6380 0.8428 -0.0006 5 6 3.9751 -0.4478 -0.0016 6 6 5.3861 -0.9772 -0.0029 7 1 6.0872 -0.1427 -0.0034 8 6 5.6112 -1.8323 1.2457 9 6 5.6059 -1.8181 -1.2340 10 8 5.2978 -2.9911 -1.2300 11 7 6.1448 -1.2666 -2.3394 12 6 6.4631 0.1612 -2.5157 13 6 7.5552 0.1932 -3.6144 14 6 7.0778 -0.9391 -4.5555 15 1 6.3430 -0.6008 -5.2860 16 6 8.2920 -1.6189 -5.2040 17 7 8.7632 -2.6371 -4.2326 18 6 9.9969 -3.2310 -4.2514 19 1 10.7121 -2.9662 -5.0162 20 6 10.3283 -4.1733 -3.2877 21 7 9.4569 -4.4957 -2.3554 22 14 12.0110 -4.9841 -3.3136 23 1 12.9594 -4.1823 -2.4995 24 1 11.9094 -6.3539 -2.7493 25 1 12.5020 -5.0605 -4.7131 26 6 7.7086 -2.9077 -3.2526 27 6 6.5115 -1.9935 -3.5665 28 1 5.6647 -2.5358 -3.9871 29 16 2.5209 -1.4372 -0.0080 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8899 0.5139 32 1 -0.3633 0.8901 0.5138 33 1 1.8670 2.0895 0.0009 34 1 4.3721 1.6349 -0.0010 35 1 6.6547 -2.1439 1.2894 36 1 5.3685 -1.2491 2.1340 37 1 4.9704 -2.7131 1.2032 38 1 6.8477 0.5815 -1.5864 39 1 5.5794 0.7089 -2.8434 40 1 8.5365 -0.0326 -3.1971 41 1 7.5629 1.1534 -4.1303 42 1 7.9972 -2.0892 -6.1421 43 1 9.0766 -0.8841 -5.3843 44 1 9.6884 -5.1545 -1.6820 45 1 8.0774 -2.6988 -2.2483 46 1 7.4022 -3.9515 -3.3219 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076458680.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:17 Heat of formation + Delta-G solvation = 28.844682 kcal Electronic energy + Delta-G solvation = -27360.994675 eV Core-core repulsion = 23763.970522 eV Total energy + Delta-G solvation = -3597.024153 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.19540 -38.43314 -37.61766 -34.80685 -34.03120 -32.16566 -31.07325 -30.60646 -28.63443 -26.88623 -26.52703 -24.63663 -23.86703 -22.97744 -22.14698 -20.46504 -19.59730 -18.99604 -18.61911 -17.38485 -16.74843 -16.17091 -15.83362 -15.24286 -15.10881 -14.49217 -14.14502 -14.12663 -13.72133 -13.46141 -13.41511 -13.27392 -12.93512 -12.73271 -12.56212 -12.23614 -12.07179 -12.03623 -11.84572 -11.70708 -11.54855 -11.42935 -11.22748 -11.12408 -10.95893 -10.75934 -10.63801 -10.43868 -10.17153 -10.01775 -9.84002 -9.67053 -9.45769 -8.56582 -8.47458 -8.46113 -8.13541 -6.78670 -5.63929 -3.00248 0.89736 1.55508 2.00486 2.61702 3.03288 3.35841 3.42474 3.47138 3.49994 4.52580 4.61299 4.66831 4.73910 4.86828 5.02346 5.07123 5.09810 5.18467 5.29406 5.31425 5.39318 5.49906 5.52243 5.56871 5.63391 5.69883 5.76850 5.79814 5.83044 5.93684 5.95742 6.05573 6.07293 6.18384 6.21641 6.31054 6.41438 6.43036 6.60054 6.61916 6.66288 6.87650 7.61018 7.65229 7.92969 8.00497 8.31912 8.59727 9.26995 9.86457 10.50459 11.45359 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.019572 B = 0.003303 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.285242 B = 8476.119919 C = 9174.988793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.194 4.194 3 C -0.142 4.142 4 C -0.133 4.133 5 C -0.165 4.165 6 C -0.037 4.037 7 H 0.103 0.897 8 C -0.136 4.136 9 C 0.534 3.466 10 O -0.523 6.523 11 N -0.603 5.603 12 C 0.102 3.898 13 C -0.121 4.121 14 C -0.111 4.111 15 H 0.086 0.914 16 C 0.142 3.858 17 N -0.604 5.604 18 C -0.232 4.232 19 H 0.078 0.922 20 C -0.007 4.007 21 N -0.915 5.915 22 Si 0.910 3.090 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.183 3.817 27 C 0.115 3.885 28 H 0.079 0.921 29 S 0.136 5.864 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.136 0.864 34 H 0.138 0.862 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.086 0.914 41 H 0.076 0.924 42 H 0.021 0.979 43 H 0.041 0.959 44 H 0.252 0.748 45 H 0.055 0.945 46 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.023 14.726 4.835 21.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.312 4.312 3 C -0.172 4.172 4 C -0.164 4.164 5 C -0.284 4.284 6 C -0.061 4.061 7 H 0.121 0.879 8 C -0.193 4.193 9 C 0.321 3.679 10 O -0.398 6.398 11 N -0.337 5.337 12 C -0.021 4.021 13 C -0.159 4.159 14 C -0.131 4.131 15 H 0.104 0.896 16 C 0.016 3.984 17 N -0.332 5.332 18 C -0.360 4.360 19 H 0.096 0.904 20 C -0.204 4.204 21 N -0.562 5.562 22 Si 0.741 3.259 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.057 3.943 27 C 0.012 3.988 28 H 0.097 0.903 29 S 0.401 5.599 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.153 0.847 34 H 0.156 0.844 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.105 0.895 41 H 0.094 0.906 42 H 0.038 0.962 43 H 0.059 0.941 44 H 0.063 0.937 45 H 0.073 0.927 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -15.409 12.311 5.033 20.355 hybrid contribution 1.256 1.199 -0.004 1.737 sum -14.152 13.509 5.029 20.201 Atomic orbital electron populations 1.20306 0.88049 1.02926 1.02638 1.24651 1.00091 0.96691 1.09745 1.19969 0.92741 0.99051 1.05418 1.20033 0.96307 0.95453 1.04577 1.24084 0.97530 0.96587 1.10150 1.19844 0.91655 0.99378 0.95176 0.87911 1.21732 1.03546 0.99658 0.94410 1.19860 0.77370 0.87684 0.83031 1.90724 1.50285 1.16265 1.82537 1.48548 1.61787 1.08759 1.14614 1.22307 0.97826 0.82537 0.99421 1.22761 0.99189 0.98236 0.95729 1.22939 0.98227 0.95272 0.96676 0.89587 1.21398 0.92843 0.91416 0.92740 1.44554 1.13183 1.45693 1.29732 1.19012 0.89303 1.17220 1.10499 0.90425 1.24838 0.98167 0.99596 0.97785 1.70006 1.33497 1.35542 1.17133 0.86147 0.83571 0.78758 0.77421 1.21693 1.21701 1.20727 1.21215 0.84099 0.95367 0.93592 1.22864 0.98612 0.94129 0.83194 0.90319 1.84685 0.95457 1.07807 1.71960 0.90869 0.91406 0.90733 0.84657 0.84394 0.91144 0.91712 0.91053 0.91225 0.91853 0.89493 0.90575 0.96152 0.94109 0.93733 0.92663 0.93857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.62 10.38 36.01 0.37 -0.25 16 2 C -0.19 -2.08 6.51 -36.00 -0.23 -2.32 16 3 C -0.14 -1.45 10.05 -41.21 -0.41 -1.86 16 4 C -0.13 -1.46 10.01 -41.21 -0.41 -1.88 16 5 C -0.17 -2.16 5.08 -36.00 -0.18 -2.34 16 6 C -0.04 -0.53 2.72 -92.92 -0.25 -0.79 16 7 H 0.10 1.27 6.34 -51.93 -0.33 0.94 16 8 C -0.14 -1.90 8.85 37.16 0.33 -1.57 16 9 C 0.53 9.93 6.43 -10.98 -0.07 9.86 16 10 O -0.52 -11.79 16.37 5.56 0.09 -11.70 16 11 N -0.60 -10.76 2.83 -161.80 -0.46 -11.22 16 12 C 0.10 1.39 6.69 -2.55 -0.02 1.38 16 13 C -0.12 -1.75 6.31 -24.77 -0.16 -1.90 16 14 C -0.11 -1.86 3.92 -88.21 -0.35 -2.21 16 15 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 16 C 0.14 2.85 6.65 -2.72 -0.02 2.84 16 17 N -0.60 -15.52 3.42 -170.85 -0.58 -16.10 16 18 C -0.23 -6.52 10.25 -15.06 -0.15 -6.67 16 19 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 20 C -0.01 -0.20 5.48 -17.43 -0.10 -0.30 16 21 N -0.91 -27.86 10.23 55.49 0.57 -27.29 16 22 Si 0.91 22.50 29.55 -169.99 -5.02 17.48 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 26 C 0.18 4.66 4.73 -3.60 -0.02 4.65 16 27 C 0.12 2.31 3.79 -65.87 -0.25 2.06 16 28 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 29 S 0.14 1.79 23.13 -107.50 -2.49 -0.69 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 34 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.07 1.10 7.68 -51.93 -0.40 0.70 16 38 H 0.07 0.83 6.64 -51.93 -0.34 0.49 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.09 1.50 7.94 -51.93 -0.41 1.09 16 41 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.04 0.78 7.94 -51.93 -0.41 0.37 16 44 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 45 H 0.06 1.59 6.88 -51.93 -0.36 1.23 16 46 H 0.04 1.29 7.51 -51.93 -0.39 0.90 16 LS Contribution 379.34 15.07 5.72 5.72 Total: -1.00 -33.82 379.34 -11.36 -45.18 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -7.26 Total: -0.07 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: -1.92 Total: -1.30 kcal Atomic # 7 Polarization: -54.14 SS G_CDS: -0.47 Total: -54.61 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.09 Total: -11.70 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Atomic # 16 Polarization: 1.79 SS G_CDS: -2.49 Total: -0.69 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.82 -11.36 -45.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076458680.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.023 kcal (2) G-P(sol) polarization free energy of solvation -33.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds