Wall clock time and date at job start Tue Mar 31 2020 20:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33388 * 125.20333 * 2 1 4 4 C 1.38427 * 114.92023 * 180.02562 * 3 2 1 5 5 C 1.33393 * 114.92162 * 0.02562 * 4 3 2 6 6 C 1.50698 * 125.20550 * 179.97438 * 5 4 3 7 7 H 1.08999 * 109.46917 * 359.97438 * 6 5 4 8 8 C 1.52998 * 109.47409 * 119.99523 * 6 5 4 9 9 C 1.50703 * 109.47085 * 239.99819 * 6 5 4 10 10 O 1.21276 * 119.99741 * 274.54913 * 9 6 5 11 11 N 1.34776 * 119.99913 * 94.54260 * 9 6 5 12 12 C 1.47347 * 125.52619 * 354.84022 * 11 9 6 13 13 C 1.54948 * 104.89995 * 156.71348 * 12 11 9 14 14 C 1.54779 * 101.45413 * 37.25823 * 13 12 11 15 15 H 1.08998 * 112.85058 * 85.51167 * 14 13 12 16 16 C 1.53525 * 109.68592 * 212.19255 * 14 13 12 17 17 N 1.48404 * 106.16368 * 84.43258 * 16 14 13 18 18 C 1.36936 * 125.07345 * 197.32399 * 17 16 14 19 19 H 1.08002 * 119.99945 * 359.97438 * 18 17 16 20 20 C 1.38806 * 120.00205 * 179.97438 * 18 17 16 21 21 N 1.31620 * 119.99899 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00502 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47191 * 89.99805 * 22 20 18 24 24 H 1.48498 * 109.47425 * 210.00479 * 22 20 18 25 25 H 1.48508 * 109.46721 * 330.00080 * 22 20 18 26 26 C 1.46490 * 109.63947 * 17.28461 * 17 16 14 27 27 C 1.47261 * 125.52092 * 174.81261 * 11 9 6 28 28 H 1.09001 * 111.94316 * 56.66605 * 27 11 9 29 29 S 1.75886 * 125.20128 * 180.31850 * 2 1 3 30 30 H 1.09004 * 109.46783 * 90.00252 * 1 2 3 31 31 H 1.08998 * 109.47156 * 210.00191 * 1 2 3 32 32 H 1.09006 * 109.46831 * 330.00339 * 1 2 3 33 33 H 1.07996 * 122.54285 * 0.05459 * 3 2 1 34 34 H 1.07992 * 122.53932 * 179.97438 * 4 3 2 35 35 H 1.08994 * 109.47125 * 184.86462 * 8 6 5 36 36 H 1.08996 * 109.47016 * 304.87412 * 8 6 5 37 37 H 1.09005 * 109.46960 * 64.86376 * 8 6 5 38 38 H 1.09005 * 110.35285 * 37.85967 * 12 11 9 39 39 H 1.09002 * 110.35118 * 275.57310 * 12 11 9 40 40 H 1.09001 * 111.02893 * 279.21161 * 13 12 11 41 41 H 1.09001 * 111.02292 * 155.30083 * 13 12 11 42 42 H 1.08995 * 109.91956 * 204.18061 * 16 14 13 43 43 H 1.08997 * 109.91602 * 325.48442 * 16 14 13 44 44 H 0.97002 * 120.00171 * 179.97438 * 21 20 18 45 45 H 1.09004 * 109.71793 * 238.32256 * 26 17 16 46 46 H 1.08998 * 109.67393 * 117.75081 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6380 0.8428 -0.0006 5 6 3.9751 -0.4478 -0.0016 6 6 5.3861 -0.9772 -0.0029 7 1 6.0872 -0.1427 -0.0034 8 6 5.6112 -1.8323 1.2457 9 6 5.6059 -1.8181 -1.2340 10 8 5.2978 -2.9911 -1.2300 11 7 6.1448 -1.2666 -2.3394 12 6 6.4631 0.1612 -2.5157 13 6 7.5552 0.1932 -3.6144 14 6 7.0778 -0.9391 -4.5555 15 1 6.3430 -0.6008 -5.2860 16 6 8.2920 -1.6189 -5.2040 17 7 8.7632 -2.6371 -4.2326 18 6 9.9969 -3.2310 -4.2514 19 1 10.7121 -2.9662 -5.0162 20 6 10.3283 -4.1733 -3.2877 21 7 9.4569 -4.4957 -2.3554 22 14 12.0110 -4.9841 -3.3136 23 1 12.9594 -4.1823 -2.4995 24 1 11.9094 -6.3539 -2.7493 25 1 12.5020 -5.0605 -4.7131 26 6 7.7086 -2.9077 -3.2526 27 6 6.5115 -1.9935 -3.5665 28 1 5.6647 -2.5358 -3.9871 29 16 2.5209 -1.4372 -0.0080 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8899 0.5139 32 1 -0.3633 0.8901 0.5138 33 1 1.8670 2.0895 0.0009 34 1 4.3721 1.6349 -0.0010 35 1 6.6547 -2.1439 1.2894 36 1 5.3685 -1.2491 2.1340 37 1 4.9704 -2.7131 1.2032 38 1 6.8477 0.5815 -1.5864 39 1 5.5794 0.7089 -2.8434 40 1 8.5365 -0.0326 -3.1971 41 1 7.5629 1.1534 -4.1303 42 1 7.9972 -2.0892 -6.1421 43 1 9.0766 -0.8841 -5.3843 44 1 9.6884 -5.1545 -1.6820 45 1 8.0774 -2.6988 -2.2483 46 1 7.4022 -3.9515 -3.3219 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076458680.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:16 Heat of formation + Delta-G solvation = 8.478765 kcal Electronic energy + Delta-G solvation = -27361.877807 eV Core-core repulsion = 23763.970522 eV Total energy + Delta-G solvation = -3597.907285 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.62213 -39.71980 -38.72128 -36.55408 -35.16155 -33.98657 -32.21154 -31.90047 -30.41254 -28.46042 -27.45523 -26.53759 -25.14222 -23.91164 -23.33733 -22.27325 -20.96911 -20.13876 -19.80937 -18.93975 -18.48394 -17.35679 -17.18355 -16.60883 -16.47559 -16.16442 -15.50262 -15.28856 -15.05468 -14.83798 -14.58522 -14.41218 -14.21109 -13.92983 -13.70183 -13.54775 -13.36816 -13.34637 -13.13397 -12.98121 -12.90585 -12.71239 -12.70792 -12.55638 -12.52022 -12.26618 -12.15179 -11.86374 -11.78814 -11.51923 -11.47850 -11.41829 -10.89143 -10.72091 -9.62243 -9.42872 -9.35552 -8.91960 -7.84050 -5.23049 0.03490 0.66670 1.15674 1.41512 1.44732 1.53569 1.60078 1.81913 2.06469 2.47356 3.31453 3.34910 3.63285 3.65497 3.69261 3.78155 3.93604 3.99951 4.04339 4.18440 4.33273 4.38628 4.45060 4.49209 4.56303 4.64085 4.70654 4.72713 4.75170 4.79362 4.84004 4.88262 4.95598 5.09240 5.10969 5.14087 5.17837 5.22105 5.27946 5.35662 5.43894 5.50089 5.58042 5.67533 5.78190 6.16552 6.60375 7.06119 7.19227 7.76259 8.38043 9.23656 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.019572 B = 0.003303 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.285242 B = 8476.119919 C = 9174.988793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.181 4.181 3 C -0.145 4.145 4 C -0.110 4.110 5 C -0.186 4.186 6 C -0.024 4.024 7 H 0.130 0.870 8 C -0.133 4.133 9 C 0.522 3.478 10 O -0.580 6.580 11 N -0.607 5.607 12 C 0.099 3.901 13 C -0.113 4.113 14 C -0.094 4.094 15 H 0.130 0.870 16 C 0.134 3.866 17 N -0.625 5.625 18 C -0.239 4.239 19 H 0.090 0.910 20 C -0.073 4.073 21 N -0.952 5.952 22 Si 0.980 3.020 23 H -0.283 1.283 24 H -0.301 1.301 25 H -0.264 1.264 26 C 0.207 3.793 27 C 0.117 3.883 28 H 0.066 0.934 29 S 0.055 5.945 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.098 0.902 33 H 0.169 0.831 34 H 0.170 0.830 35 H 0.052 0.948 36 H 0.095 0.905 37 H 0.046 0.954 38 H 0.092 0.908 39 H 0.099 0.901 40 H 0.053 0.947 41 H 0.125 0.875 42 H 0.026 0.974 43 H 0.059 0.941 44 H 0.241 0.759 45 H 0.013 0.987 46 H -0.022 1.022 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.657 19.708 3.954 25.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.298 4.298 3 C -0.174 4.174 4 C -0.141 4.141 5 C -0.303 4.303 6 C -0.047 4.047 7 H 0.147 0.853 8 C -0.191 4.191 9 C 0.311 3.689 10 O -0.459 6.459 11 N -0.339 5.339 12 C -0.022 4.022 13 C -0.150 4.150 14 C -0.113 4.113 15 H 0.147 0.853 16 C 0.010 3.990 17 N -0.352 5.352 18 C -0.368 4.368 19 H 0.108 0.892 20 C -0.265 4.265 21 N -0.601 5.601 22 Si 0.808 3.192 23 H -0.209 1.209 24 H -0.228 1.228 25 H -0.188 1.188 26 C 0.080 3.920 27 C 0.012 3.988 28 H 0.084 0.916 29 S 0.319 5.681 30 H 0.099 0.901 31 H 0.085 0.915 32 H 0.117 0.883 33 H 0.186 0.814 34 H 0.187 0.813 35 H 0.071 0.929 36 H 0.114 0.886 37 H 0.065 0.935 38 H 0.110 0.890 39 H 0.117 0.883 40 H 0.071 0.929 41 H 0.143 0.857 42 H 0.044 0.956 43 H 0.077 0.923 44 H 0.050 0.950 45 H 0.031 0.969 46 H -0.004 1.004 Dipole moment (debyes) X Y Z Total from point charges -16.032 17.371 4.109 23.993 hybrid contribution 1.398 -0.330 0.216 1.453 sum -14.634 17.041 4.325 22.874 Atomic orbital electron populations 1.20440 0.86085 1.04091 1.03487 1.25006 1.01187 0.95014 1.08608 1.20353 0.92340 1.00188 1.04524 1.20429 0.97418 0.94937 1.01325 1.23858 0.95866 0.97058 1.13536 1.19752 0.93569 0.99087 0.92309 0.85253 1.21708 1.01832 0.99463 0.96088 1.20807 0.76241 0.87542 0.84286 1.90690 1.52622 1.19004 1.83607 1.48686 1.61048 1.10616 1.13580 1.22661 0.99079 0.79930 1.00537 1.22760 0.97522 0.99318 0.95444 1.22989 0.97237 0.94530 0.96575 0.85260 1.21682 0.94840 0.90630 0.91885 1.44868 1.12600 1.46811 1.30923 1.19504 0.90454 1.16710 1.10109 0.89194 1.25768 1.02052 1.00875 0.97853 1.70313 1.35590 1.36207 1.18025 0.85050 0.79095 0.76915 0.78118 1.20945 1.22808 1.18828 1.20696 0.86151 0.93255 0.91882 1.22554 0.95775 0.94824 0.85618 0.91639 1.85043 0.98119 1.11226 1.73688 0.90087 0.91450 0.88315 0.81374 0.81284 0.92865 0.88619 0.93508 0.89011 0.88303 0.92858 0.85691 0.95568 0.92309 0.94974 0.96899 1.00380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.07 10.38 71.24 0.74 -0.33 16 2 C -0.18 -3.46 6.51 24.59 0.16 -3.30 16 3 C -0.14 -2.34 10.05 21.22 0.21 -2.13 16 4 C -0.11 -1.97 10.01 21.22 0.21 -1.76 16 5 C -0.19 -4.56 5.08 24.59 0.12 -4.44 16 6 C -0.02 -0.69 2.72 -12.29 -0.03 -0.72 16 7 H 0.13 2.86 6.34 -2.39 -0.02 2.85 16 8 C -0.13 -3.89 8.85 71.98 0.64 -3.25 16 9 C 0.52 20.21 6.43 87.66 0.56 20.78 16 10 O -0.58 -28.57 16.37 -3.02 -0.05 -28.62 16 11 N -0.61 -21.55 2.83 -784.22 -2.22 -23.77 16 12 C 0.10 2.32 6.69 86.88 0.58 2.90 16 13 C -0.11 -2.81 6.31 31.87 0.20 -2.61 16 14 C -0.09 -2.89 3.92 -9.23 -0.04 -2.93 16 15 H 0.13 2.98 8.14 -2.39 -0.02 2.96 16 16 C 0.13 5.21 6.65 86.19 0.57 5.78 16 17 N -0.62 -33.07 3.42 -694.45 -2.37 -35.44 16 18 C -0.24 -13.73 10.25 84.03 0.86 -12.87 16 19 H 0.09 4.82 7.83 -2.91 -0.02 4.80 16 20 C -0.07 -4.37 5.48 84.86 0.47 -3.90 16 21 N -0.95 -62.11 10.23 21.65 0.22 -61.89 16 22 Si 0.98 47.77 29.55 68.60 2.03 49.79 16 23 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 24 H -0.30 -15.05 7.11 99.48 0.71 -14.34 16 25 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 26 C 0.21 11.28 4.73 86.67 0.41 11.69 16 27 C 0.12 4.80 3.79 45.91 0.17 4.98 16 28 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 29 S 0.05 1.47 23.13 -56.49 -1.31 0.17 16 30 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.07 0.88 8.14 -2.39 -0.02 0.87 16 32 H 0.10 0.83 8.14 -2.38 -0.02 0.81 16 33 H 0.17 1.66 8.06 -2.91 -0.02 1.64 16 34 H 0.17 1.95 8.06 -2.91 -0.02 1.93 16 35 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.05 1.58 7.68 -2.38 -0.02 1.56 16 38 H 0.09 1.78 6.64 -2.38 -0.02 1.77 16 39 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.05 1.72 7.94 -2.39 -0.02 1.70 16 41 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.06 2.09 7.94 -2.39 -0.02 2.08 16 44 H 0.24 15.51 8.31 -92.71 -0.77 14.74 16 45 H 0.01 0.80 6.88 -2.39 -0.02 0.78 16 46 H -0.02 -1.45 7.51 -2.39 -0.02 -1.47 16 Total: -1.00 -84.05 379.34 3.11 -80.94 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: 0.96 Total: 10.93 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: 5.85 Total: 7.90 kcal Atomic # 7 Polarization: -116.73 SS G_CDS: -4.37 Total: -121.10 kcal Atomic # 8 Polarization: -28.57 SS G_CDS: -0.05 Total: -28.62 kcal Atomic # 14 Polarization: 47.77 SS G_CDS: 2.03 Total: 49.79 kcal Atomic # 16 Polarization: 1.47 SS G_CDS: -1.31 Total: 0.17 kcal Total: -84.05 3.11 -80.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076458680.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.415 kcal (2) G-P(sol) polarization free energy of solvation -84.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds