Wall clock time and date at job start Tue Mar 31 2020 20:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33393 * 125.19786 * 2 1 4 4 C 1.38430 * 114.91310 * 179.78605 * 3 2 1 5 5 C 1.50701 * 122.53476 * 180.26779 * 4 3 2 6 6 C 1.33385 * 114.92124 * 0.43455 * 4 3 2 7 7 C 1.50700 * 125.19872 * 179.85663 * 6 4 3 8 8 C 1.50697 * 109.47563 * 89.71819 * 7 6 4 9 9 O 1.21292 * 119.99456 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00900 * 180.02562 * 8 7 6 11 11 C 1.46493 * 120.00579 * 179.97438 * 10 8 7 12 12 H 1.09001 * 110.55495 * 36.44774 * 11 10 8 13 13 C 1.54851 * 110.62733 * 273.54735 * 11 10 8 14 14 C 1.55849 * 103.44265 * 241.34853 * 13 11 10 15 15 H 1.09009 * 115.55813 * 158.81060 * 14 13 11 16 16 C 1.55840 * 105.74310 * 287.98877 * 14 13 11 17 17 C 1.55483 * 103.32568 * 71.92460 * 16 14 13 18 18 C 1.55844 * 103.32739 * 0.02562 * 17 16 14 19 19 H 1.08998 * 116.12692 * 159.23580 * 18 17 16 20 20 N 1.50236 * 101.05270 * 32.94067 * 14 13 11 21 21 C 1.36934 * 130.84371 * 125.27703 * 20 14 13 22 22 H 1.08001 * 119.99789 * 351.57407 * 21 20 14 23 23 C 1.38818 * 120.00143 * 171.83730 * 21 20 14 24 24 N 1.31615 * 119.99919 * 157.81823 * 23 21 20 25 25 Si 1.86802 * 120.00026 * 337.82289 * 23 21 20 26 26 H 1.48495 * 109.47107 * 93.08565 * 25 23 21 27 27 H 1.48497 * 109.46875 * 213.08814 * 25 23 21 28 28 H 1.48502 * 109.46988 * 333.08751 * 25 23 21 29 29 S 1.75877 * 109.59553 * 359.59143 * 6 4 3 30 30 H 1.09011 * 109.47248 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47499 * 300.00136 * 1 2 3 32 32 H 1.09002 * 109.47317 * 60.00354 * 1 2 3 33 33 H 1.07992 * 122.54331 * 0.02562 * 3 2 1 34 34 H 1.09001 * 109.47641 * 270.17326 * 5 4 3 35 35 H 1.09001 * 109.47012 * 30.18118 * 5 4 3 36 36 H 1.09006 * 109.46749 * 150.17134 * 5 4 3 37 37 H 1.08997 * 109.47431 * 329.71273 * 7 6 4 38 38 H 1.09005 * 109.47050 * 209.71931 * 7 6 4 39 39 H 0.97004 * 119.99551 * 0.02562 * 10 8 7 40 40 H 1.08996 * 110.62444 * 122.86035 * 13 11 10 41 41 H 1.09000 * 110.62568 * 359.83674 * 13 11 10 42 42 H 1.09000 * 110.62740 * 190.50494 * 16 14 13 43 43 H 1.09002 * 110.62291 * 313.52264 * 16 14 13 44 44 H 1.09006 * 110.60867 * 241.58214 * 17 16 14 45 45 H 1.09003 * 110.88842 * 118.55557 * 17 16 14 46 46 H 0.97000 * 120.00087 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 3.6379 0.8429 0.0047 5 6 4.6622 1.9483 0.0114 6 6 3.9750 -0.4477 -0.0007 7 6 5.3860 -0.9769 -0.0004 8 6 5.8560 -1.1535 1.4205 9 8 5.1180 -0.8763 2.3422 10 7 7.0968 -1.6184 1.6672 11 6 7.5539 -1.7895 3.0484 12 1 6.7357 -2.1303 3.6828 13 6 8.1525 -0.4690 3.5924 14 6 9.6301 -0.8463 3.9135 15 1 10.3279 -0.0105 3.9668 16 6 9.5695 -1.7533 5.1793 17 6 8.9733 -3.0837 4.6386 18 6 8.7592 -2.7915 3.1228 19 1 8.6824 -3.6626 2.4722 20 7 9.9067 -1.8635 2.8432 21 6 10.8969 -1.9236 1.8992 22 1 11.5616 -1.0839 1.7597 23 6 11.0428 -3.0617 1.1178 24 7 11.6606 -2.9888 -0.0421 25 14 10.3622 -4.6965 1.7124 26 1 8.9904 -4.8860 1.1765 27 1 11.2362 -5.7989 1.2368 28 1 10.3192 -4.7043 3.1968 29 16 2.5209 -1.4371 -0.0005 30 1 -0.3634 -1.0278 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 1.8668 2.0895 0.0004 34 1 4.9109 2.2195 -1.0146 35 1 4.2555 2.8173 0.5286 36 1 5.5611 1.6075 0.5252 37 1 6.0389 -0.2713 -0.5140 38 1 5.4137 -1.9378 -0.5143 39 1 7.6875 -1.8390 0.9300 40 1 7.6312 -0.1550 4.4967 41 1 8.1118 0.3124 2.8335 42 1 10.5684 -1.9142 5.5847 43 1 8.9137 -1.3174 5.9330 44 1 8.0234 -3.3043 5.1255 45 1 9.6739 -3.9074 4.7753 46 1 11.7623 -3.7839 -0.5882 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098299523.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:44 Heat of formation + Delta-G solvation = 39.150859 kcal Electronic energy + Delta-G solvation = -27015.748051 eV Core-core repulsion = 23419.170807 eV Total energy + Delta-G solvation = -3596.577243 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.05705 -38.99546 -37.98048 -33.79575 -33.42677 -32.62273 -30.59291 -29.69462 -29.23902 -28.37971 -28.02170 -24.89259 -24.00539 -21.87735 -21.56775 -20.29024 -19.98148 -18.96077 -18.26141 -17.23465 -17.09086 -16.84794 -16.22994 -15.12213 -15.02101 -14.64506 -14.37539 -14.11613 -13.77218 -13.54501 -13.35192 -13.23770 -13.17420 -13.04797 -12.75383 -12.54864 -12.32772 -12.21534 -11.63735 -11.53566 -11.48325 -11.46653 -11.30117 -11.14914 -11.06000 -10.91175 -10.66065 -10.39579 -10.28523 -9.94383 -9.69537 -9.42620 -9.33514 -8.94638 -8.55070 -8.42656 -8.21201 -7.31724 -5.99908 -3.24912 0.98382 1.62666 2.01147 2.67553 2.94535 3.21289 3.39986 3.42602 3.64227 4.44946 4.59857 4.65382 4.73232 5.03800 5.07634 5.09119 5.21261 5.30443 5.31891 5.33257 5.36341 5.43692 5.54133 5.59465 5.61775 5.64378 5.67469 5.69791 5.78225 5.89425 5.92605 5.96559 6.02722 6.13199 6.18465 6.21356 6.40712 6.44236 6.47398 6.58332 6.64795 6.73568 6.84220 7.03896 7.30718 7.95882 8.23640 8.58981 8.64783 9.57093 10.17766 11.16296 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.016740 B = 0.003259 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.259670 B = 8588.556604 C = 8974.996577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.184 4.184 3 C -0.134 4.134 4 C -0.093 4.093 5 C -0.094 4.094 6 C -0.155 4.155 7 C -0.074 4.074 8 C 0.512 3.488 9 O -0.540 6.540 10 N -0.708 5.708 11 C 0.133 3.867 12 H 0.081 0.919 13 C -0.134 4.134 14 C 0.140 3.860 15 H 0.095 0.905 16 C -0.132 4.132 17 C -0.133 4.133 18 C 0.115 3.885 19 H 0.094 0.906 20 N -0.606 5.606 21 C -0.223 4.223 22 H 0.098 0.902 23 C 0.016 3.984 24 N -0.911 5.911 25 Si 0.866 3.134 26 H -0.291 1.291 27 H -0.304 1.304 28 H -0.261 1.261 29 S 0.101 5.899 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.136 0.864 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.113 0.887 38 H 0.101 0.899 39 H 0.408 0.592 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.069 0.931 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.467 6.037 0.993 18.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.302 4.302 3 C -0.164 4.164 4 C -0.104 4.104 5 C -0.153 4.153 6 C -0.272 4.272 7 C -0.116 4.116 8 C 0.297 3.703 9 O -0.418 6.418 10 N -0.359 5.359 11 C 0.026 3.974 12 H 0.099 0.901 13 C -0.175 4.175 14 C 0.033 3.967 15 H 0.113 0.887 16 C -0.171 4.171 17 C -0.172 4.172 18 C 0.008 3.992 19 H 0.112 0.888 20 N -0.328 5.328 21 C -0.350 4.350 22 H 0.116 0.884 23 C -0.182 4.182 24 N -0.556 5.556 25 Si 0.699 3.301 26 H -0.219 1.219 27 H -0.233 1.233 28 H -0.186 1.186 29 S 0.368 5.632 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.153 0.847 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.131 0.869 38 H 0.119 0.881 39 H 0.243 0.757 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.087 0.913 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.037 4.556 1.366 18.654 hybrid contribution 0.346 0.220 -0.130 0.431 sum -17.691 4.776 1.236 18.366 Atomic orbital electron populations 1.20288 0.88063 1.02673 1.02711 1.24361 0.99671 0.95903 1.10229 1.19836 0.92314 0.99078 1.05192 1.18703 0.94699 0.94022 1.03023 1.20508 0.97094 0.95775 1.01933 1.23509 0.97115 0.95866 1.10734 1.20178 0.91783 1.03644 0.96003 1.20354 0.81819 0.77399 0.90730 1.90682 1.54862 1.50246 1.45972 1.45995 1.14530 1.65590 1.09755 1.22639 0.96069 0.96840 0.81817 0.90071 1.23317 0.97173 0.96872 1.00098 1.22958 0.93772 0.92345 0.87598 0.88746 1.23077 1.00080 0.96271 0.97675 1.23126 0.99953 0.98167 0.95993 1.23565 0.87559 0.93143 0.94927 0.88849 1.46899 1.27425 1.23300 1.35213 1.18663 1.07875 1.01005 1.07423 0.88435 1.24698 0.99585 0.97595 0.96312 1.69824 1.47059 1.28927 1.09790 0.87187 0.76823 0.85918 0.80188 1.21948 1.23251 1.18581 1.84109 0.96377 1.09342 1.73393 0.91643 0.90742 0.90773 0.84674 0.91305 0.91577 0.91511 0.86941 0.88053 0.75720 0.91894 0.91689 0.92078 0.92354 0.92305 0.91271 0.92784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.64 10.38 36.01 0.37 -0.27 16 2 C -0.18 -2.13 6.51 -36.00 -0.23 -2.36 16 3 C -0.13 -1.59 9.85 -41.20 -0.41 -1.99 16 4 C -0.09 -1.21 5.80 -106.25 -0.62 -1.83 16 5 C -0.09 -1.07 9.60 36.01 0.35 -0.72 16 6 C -0.15 -2.15 5.00 -36.00 -0.18 -2.33 16 7 C -0.07 -1.00 5.56 -29.04 -0.16 -1.17 16 8 C 0.51 8.54 7.82 -10.99 -0.09 8.45 16 9 O -0.54 -10.53 15.75 5.55 0.09 -10.44 16 10 N -0.71 -12.34 5.11 -50.83 -0.26 -12.60 16 11 C 0.13 2.40 2.76 -64.84 -0.18 2.22 16 12 H 0.08 1.47 7.42 -51.93 -0.39 1.09 16 13 C -0.13 -2.30 6.24 -24.23 -0.15 -2.45 16 14 C 0.14 2.55 5.43 -62.80 -0.34 2.21 16 15 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 16 C -0.13 -2.16 6.49 -23.90 -0.16 -2.31 16 17 C -0.13 -2.35 6.27 -23.89 -0.15 -2.50 16 18 C 0.12 2.31 3.19 -62.22 -0.20 2.11 16 19 H 0.09 2.04 3.48 -51.93 -0.18 1.86 16 20 N -0.61 -13.32 2.83 -145.19 -0.41 -13.73 16 21 C -0.22 -5.85 10.94 -15.06 -0.16 -6.02 16 22 H 0.10 2.74 8.06 -52.49 -0.42 2.32 16 23 C 0.02 0.43 5.49 -17.43 -0.10 0.33 16 24 N -0.91 -26.69 13.97 55.49 0.78 -25.92 16 25 Si 0.87 21.02 24.63 -169.99 -4.19 16.83 16 26 H -0.29 -6.87 6.75 56.52 0.38 -6.49 16 27 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 28 H -0.26 -6.02 4.84 56.52 0.27 -5.75 16 29 S 0.10 1.31 23.31 -107.50 -2.51 -1.20 16 30 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.67 8.13 -51.93 -0.42 0.25 16 36 H 0.07 0.84 7.26 -51.93 -0.38 0.46 16 37 H 0.11 1.34 7.33 -51.93 -0.38 0.96 16 38 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.41 7.28 8.64 -40.82 -0.35 6.92 16 40 H 0.06 0.99 7.85 -51.93 -0.41 0.58 16 41 H 0.06 1.16 7.98 -51.93 -0.41 0.75 16 42 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.06 0.82 7.85 -51.93 -0.41 0.41 16 44 H 0.06 0.91 7.88 -51.93 -0.41 0.50 16 45 H 0.07 1.30 6.57 -51.93 -0.34 0.96 16 46 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 373.43 15.07 5.63 5.63 Total: -1.00 -31.04 373.43 -10.44 -41.48 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -7.17 Total: 8.56 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: -2.40 Total: -8.62 kcal Atomic # 7 Polarization: -52.35 SS G_CDS: 0.10 Total: -52.24 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.09 Total: -10.44 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.19 Total: 16.83 kcal Atomic # 16 Polarization: 1.31 SS G_CDS: -2.51 Total: -1.20 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.04 -10.44 -41.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098299523.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.632 kcal (2) G-P(sol) polarization free energy of solvation -31.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds