Wall clock time and date at job start Tue Mar 31 2020 20:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33393 * 125.19786 * 2 1 4 4 C 1.38430 * 114.91310 * 179.78605 * 3 2 1 5 5 C 1.50701 * 122.53476 * 180.26779 * 4 3 2 6 6 C 1.33385 * 114.92124 * 0.43455 * 4 3 2 7 7 C 1.50700 * 125.19872 * 179.85663 * 6 4 3 8 8 C 1.50697 * 109.47563 * 89.71819 * 7 6 4 9 9 O 1.21292 * 119.99456 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00900 * 180.02562 * 8 7 6 11 11 C 1.46493 * 120.00579 * 179.97438 * 10 8 7 12 12 H 1.09001 * 110.55495 * 36.44774 * 11 10 8 13 13 C 1.54851 * 110.62733 * 273.54735 * 11 10 8 14 14 C 1.55849 * 103.44265 * 241.34853 * 13 11 10 15 15 H 1.09009 * 115.55813 * 158.81060 * 14 13 11 16 16 C 1.55840 * 105.74310 * 287.98877 * 14 13 11 17 17 C 1.55483 * 103.32568 * 71.92460 * 16 14 13 18 18 C 1.55844 * 103.32739 * 0.02562 * 17 16 14 19 19 H 1.08998 * 116.12692 * 159.23580 * 18 17 16 20 20 N 1.50236 * 101.05270 * 32.94067 * 14 13 11 21 21 C 1.36934 * 130.84371 * 125.27703 * 20 14 13 22 22 H 1.08001 * 119.99789 * 351.57407 * 21 20 14 23 23 C 1.38818 * 120.00143 * 171.83730 * 21 20 14 24 24 N 1.31615 * 119.99919 * 157.81823 * 23 21 20 25 25 Si 1.86802 * 120.00026 * 337.82289 * 23 21 20 26 26 H 1.48495 * 109.47107 * 93.08565 * 25 23 21 27 27 H 1.48497 * 109.46875 * 213.08814 * 25 23 21 28 28 H 1.48502 * 109.46988 * 333.08751 * 25 23 21 29 29 S 1.75877 * 109.59553 * 359.59143 * 6 4 3 30 30 H 1.09011 * 109.47248 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47499 * 300.00136 * 1 2 3 32 32 H 1.09002 * 109.47317 * 60.00354 * 1 2 3 33 33 H 1.07992 * 122.54331 * 0.02562 * 3 2 1 34 34 H 1.09001 * 109.47641 * 270.17326 * 5 4 3 35 35 H 1.09001 * 109.47012 * 30.18118 * 5 4 3 36 36 H 1.09006 * 109.46749 * 150.17134 * 5 4 3 37 37 H 1.08997 * 109.47431 * 329.71273 * 7 6 4 38 38 H 1.09005 * 109.47050 * 209.71931 * 7 6 4 39 39 H 0.97004 * 119.99551 * 0.02562 * 10 8 7 40 40 H 1.08996 * 110.62444 * 122.86035 * 13 11 10 41 41 H 1.09000 * 110.62568 * 359.83674 * 13 11 10 42 42 H 1.09000 * 110.62740 * 190.50494 * 16 14 13 43 43 H 1.09002 * 110.62291 * 313.52264 * 16 14 13 44 44 H 1.09006 * 110.60867 * 241.58214 * 17 16 14 45 45 H 1.09003 * 110.88842 * 118.55557 * 17 16 14 46 46 H 0.97000 * 120.00087 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 3.6379 0.8429 0.0047 5 6 4.6622 1.9483 0.0114 6 6 3.9750 -0.4477 -0.0007 7 6 5.3860 -0.9769 -0.0004 8 6 5.8560 -1.1535 1.4205 9 8 5.1180 -0.8763 2.3422 10 7 7.0968 -1.6184 1.6672 11 6 7.5539 -1.7895 3.0484 12 1 6.7357 -2.1303 3.6828 13 6 8.1525 -0.4690 3.5924 14 6 9.6301 -0.8463 3.9135 15 1 10.3279 -0.0105 3.9668 16 6 9.5695 -1.7533 5.1793 17 6 8.9733 -3.0837 4.6386 18 6 8.7592 -2.7915 3.1228 19 1 8.6824 -3.6626 2.4722 20 7 9.9067 -1.8635 2.8432 21 6 10.8969 -1.9236 1.8992 22 1 11.5616 -1.0839 1.7597 23 6 11.0428 -3.0617 1.1178 24 7 11.6606 -2.9888 -0.0421 25 14 10.3622 -4.6965 1.7124 26 1 8.9904 -4.8860 1.1765 27 1 11.2362 -5.7989 1.2368 28 1 10.3192 -4.7043 3.1968 29 16 2.5209 -1.4371 -0.0005 30 1 -0.3634 -1.0278 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 1.8668 2.0895 0.0004 34 1 4.9109 2.2195 -1.0146 35 1 4.2555 2.8173 0.5286 36 1 5.5611 1.6075 0.5252 37 1 6.0389 -0.2713 -0.5140 38 1 5.4137 -1.9378 -0.5143 39 1 7.6875 -1.8390 0.9300 40 1 7.6312 -0.1550 4.4967 41 1 8.1118 0.3124 2.8335 42 1 10.5684 -1.9142 5.5847 43 1 8.9137 -1.3174 5.9330 44 1 8.0234 -3.3043 5.1255 45 1 9.6739 -3.9074 4.7753 46 1 11.7623 -3.7839 -0.5882 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098299523.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:42 Heat of formation + Delta-G solvation = 21.056733 kcal Electronic energy + Delta-G solvation = -27016.532671 eV Core-core repulsion = 23419.170807 eV Total energy + Delta-G solvation = -3597.361864 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.48227 -40.26511 -39.07206 -35.25332 -34.58573 -34.32437 -31.66550 -31.46570 -30.68010 -29.49771 -29.07627 -26.07729 -25.68863 -23.14734 -22.48689 -21.96940 -21.31688 -20.44228 -19.27297 -18.92672 -18.37143 -18.06002 -17.69612 -16.74056 -16.16679 -15.75827 -15.67445 -15.37249 -15.26536 -15.04035 -14.69179 -14.29023 -14.24218 -14.01169 -13.95650 -13.90773 -13.51625 -13.29209 -13.19022 -12.88659 -12.84484 -12.79996 -12.48655 -12.40933 -12.35978 -12.22047 -11.97154 -11.84764 -11.60229 -11.51474 -11.27182 -11.13903 -10.89103 -10.79259 -10.00088 -9.37089 -9.20588 -9.16879 -8.10128 -5.29755 0.03847 0.69832 1.07304 1.26358 1.41860 1.48137 1.63331 1.73437 2.34225 2.43755 2.94615 3.18820 3.63673 3.73801 3.84050 3.91021 3.94011 4.06227 4.12836 4.26718 4.30797 4.34961 4.46462 4.49946 4.52932 4.54461 4.61816 4.62197 4.70874 4.74234 4.75367 4.80547 4.80931 5.01972 5.06297 5.12138 5.14333 5.23754 5.26560 5.34156 5.41456 5.51815 5.57307 5.66509 5.67884 6.15271 6.56658 6.65000 7.23593 7.52073 8.25431 9.09758 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.016740 B = 0.003259 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.259670 B = 8588.556604 C = 8974.996577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.176 4.176 3 C -0.149 4.149 4 C -0.097 4.097 5 C -0.093 4.093 6 C -0.182 4.182 7 C -0.069 4.069 8 C 0.516 3.484 9 O -0.567 6.567 10 N -0.713 5.713 11 C 0.138 3.862 12 H 0.087 0.913 13 C -0.123 4.123 14 C 0.135 3.865 15 H 0.098 0.902 16 C -0.121 4.121 17 C -0.131 4.131 18 C 0.106 3.894 19 H 0.076 0.924 20 N -0.624 5.624 21 C -0.201 4.201 22 H 0.067 0.933 23 C -0.039 4.039 24 N -0.960 5.960 25 Si 0.923 3.077 26 H -0.284 1.284 27 H -0.323 1.323 28 H -0.242 1.242 29 S 0.075 5.925 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.158 0.842 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.050 0.950 37 H 0.125 0.875 38 H 0.113 0.887 39 H 0.404 0.596 40 H 0.086 0.914 41 H 0.053 0.947 42 H 0.060 0.940 43 H 0.092 0.908 44 H 0.087 0.913 45 H 0.057 0.943 46 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.922 6.824 2.613 21.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.294 4.294 3 C -0.179 4.179 4 C -0.109 4.109 5 C -0.152 4.152 6 C -0.299 4.299 7 C -0.111 4.111 8 C 0.302 3.698 9 O -0.446 6.446 10 N -0.363 5.363 11 C 0.031 3.969 12 H 0.105 0.895 13 C -0.163 4.163 14 C 0.029 3.971 15 H 0.116 0.884 16 C -0.160 4.160 17 C -0.170 4.170 18 C -0.001 4.001 19 H 0.093 0.907 20 N -0.348 5.348 21 C -0.329 4.329 22 H 0.085 0.915 23 C -0.233 4.233 24 N -0.608 5.608 25 Si 0.755 3.245 26 H -0.213 1.213 27 H -0.253 1.253 28 H -0.166 1.166 29 S 0.341 5.659 30 H 0.089 0.911 31 H 0.105 0.895 32 H 0.111 0.889 33 H 0.176 0.824 34 H 0.103 0.897 35 H 0.096 0.904 36 H 0.069 0.931 37 H 0.143 0.857 38 H 0.131 0.869 39 H 0.239 0.761 40 H 0.105 0.895 41 H 0.072 0.928 42 H 0.079 0.921 43 H 0.111 0.889 44 H 0.106 0.894 45 H 0.076 0.924 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -20.530 5.360 3.043 21.436 hybrid contribution 1.048 0.118 -0.609 1.217 sum -19.483 5.477 2.434 20.384 Atomic orbital electron populations 1.20429 0.85679 1.03539 1.04158 1.24822 1.01161 0.94801 1.08584 1.20112 0.91880 1.00309 1.05572 1.19059 0.95769 0.94151 1.01901 1.20537 0.96072 0.95667 1.02901 1.23590 0.97153 0.96426 1.12758 1.20163 0.92213 1.04680 0.94011 1.20794 0.81010 0.76222 0.91729 1.90656 1.55411 1.51437 1.47140 1.46075 1.14881 1.65806 1.09491 1.22574 0.95348 0.96606 0.82374 0.89479 1.23231 0.96396 0.95989 1.00700 1.23213 0.94338 0.92065 0.87467 0.88426 1.23024 1.00902 0.94951 0.97122 1.23132 1.01276 0.98458 0.94164 1.23706 0.87467 0.92641 0.96254 0.90687 1.46944 1.27085 1.25033 1.35700 1.18536 1.07410 0.99524 1.07395 0.91494 1.25199 1.01195 1.00394 0.96500 1.69948 1.50250 1.29286 1.11330 0.86278 0.75995 0.81607 0.80604 1.21260 1.25279 1.16639 1.84132 0.97025 1.10752 1.73992 0.91125 0.89526 0.88877 0.82425 0.89709 0.90364 0.93101 0.85678 0.86929 0.76146 0.89545 0.92841 0.92126 0.88948 0.89403 0.92411 0.93322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.09 10.38 71.24 0.74 -0.35 16 2 C -0.18 -3.74 6.51 24.59 0.16 -3.58 16 3 C -0.15 -3.24 9.85 21.22 0.21 -3.03 16 4 C -0.10 -2.40 5.80 -20.92 -0.12 -2.52 16 5 C -0.09 -1.97 9.60 71.24 0.68 -1.29 16 6 C -0.18 -4.91 5.00 24.59 0.12 -4.79 16 7 C -0.07 -1.84 5.56 29.10 0.16 -1.68 16 8 C 0.52 16.81 7.82 87.66 0.69 17.49 16 9 O -0.57 -21.51 15.75 -3.07 -0.05 -21.56 16 10 N -0.71 -24.30 5.11 -433.10 -2.21 -26.51 16 11 C 0.14 4.71 2.76 47.00 0.13 4.84 16 12 H 0.09 2.92 7.42 -2.39 -0.02 2.90 16 13 C -0.12 -3.93 6.24 32.21 0.20 -3.73 16 14 C 0.13 4.63 5.43 46.23 0.25 4.88 16 15 H 0.10 3.26 8.14 -2.38 -0.02 3.24 16 16 C -0.12 -3.53 6.49 32.43 0.21 -3.32 16 17 C -0.13 -4.22 6.27 32.43 0.20 -4.01 16 18 C 0.11 4.05 3.19 46.62 0.15 4.20 16 19 H 0.08 3.17 3.48 -2.39 -0.01 3.17 16 20 N -0.62 -26.96 2.83 -613.27 -1.73 -28.69 16 21 C -0.20 -10.69 10.94 84.04 0.92 -9.77 16 22 H 0.07 3.91 8.06 -2.91 -0.02 3.88 16 23 C -0.04 -2.20 5.49 84.86 0.47 -1.73 16 24 N -0.96 -58.23 13.97 21.65 0.30 -57.92 16 25 Si 0.92 44.25 24.63 68.60 1.69 45.94 16 26 H -0.28 -13.12 6.75 99.48 0.67 -12.45 16 27 H -0.32 -16.33 7.11 99.48 0.71 -15.62 16 28 H -0.24 -10.71 4.84 99.48 0.48 -10.23 16 29 S 0.08 1.88 23.31 -56.49 -1.32 0.56 16 30 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 31 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.16 2.61 8.06 -2.91 -0.02 2.58 16 34 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.08 1.44 8.13 -2.39 -0.02 1.42 16 36 H 0.05 1.23 7.26 -2.38 -0.02 1.21 16 37 H 0.13 2.93 7.33 -2.39 -0.02 2.91 16 38 H 0.11 2.68 8.14 -2.38 -0.02 2.66 16 39 H 0.40 14.43 8.64 -92.71 -0.80 13.62 16 40 H 0.09 2.39 7.85 -2.39 -0.02 2.37 16 41 H 0.05 1.83 7.98 -2.39 -0.02 1.81 16 42 H 0.06 1.79 8.14 -2.39 -0.02 1.78 16 43 H 0.09 2.12 7.85 -2.39 -0.02 2.10 16 44 H 0.09 2.34 7.88 -2.38 -0.02 2.32 16 45 H 0.06 2.00 6.57 -2.39 -0.02 1.98 16 46 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -68.06 373.43 1.78 -66.27 By element: Atomic # 1 Polarization: 30.37 SS G_CDS: -0.07 Total: 30.30 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: 5.17 Total: -8.38 kcal Atomic # 7 Polarization: -109.48 SS G_CDS: -3.64 Total: -113.13 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -0.05 Total: -21.56 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 1.69 Total: 45.94 kcal Atomic # 16 Polarization: 1.88 SS G_CDS: -1.32 Total: 0.56 kcal Total: -68.06 1.78 -66.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098299523.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.330 kcal (2) G-P(sol) polarization free energy of solvation -68.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds