Wall clock time and date at job start Tue Mar 31 2020 18:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52991 * 109.47033 * 2 1 4 4 H 1.09003 * 109.47825 * 305.00317 * 3 2 1 5 5 C 1.50703 * 109.47226 * 184.99813 * 3 2 1 6 6 H 1.07995 * 120.00403 * 239.99974 * 5 3 2 7 7 C 1.37883 * 119.99369 * 60.00470 * 5 3 2 8 8 N 1.31508 * 120.00120 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99541 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47519 * 89.99875 * 9 7 5 11 11 H 1.48507 * 109.46762 * 209.99616 * 9 7 5 12 12 H 1.48495 * 109.47252 * 329.99437 * 9 7 5 13 13 N 1.46507 * 109.47317 * 65.00496 * 3 2 1 14 14 C 1.34778 * 119.99696 * 275.27505 * 13 3 2 15 15 O 1.21361 * 120.00133 * 359.71791 * 14 13 3 16 16 C 1.49341 * 119.99893 * 179.72564 * 14 13 3 17 17 O 1.21381 * 119.99987 * 359.97438 * 16 14 13 18 18 N 1.34778 * 119.99893 * 179.97438 * 16 14 13 19 19 C 1.39805 * 120.00023 * 175.37777 * 18 16 14 20 20 C 1.38944 * 120.05090 * 35.09531 * 19 18 16 21 21 C 1.38064 * 119.94887 * 179.97438 * 20 19 18 22 22 C 1.38517 * 120.05153 * 0.02562 * 21 20 19 23 23 F 1.35102 * 119.94874 * 179.97438 * 22 21 20 24 24 C 1.38465 * 120.10058 * 359.97438 * 22 21 20 25 25 C 1.50704 * 119.97263 * 179.97438 * 24 22 21 26 26 C 1.53004 * 117.49790 * 188.74750 * 25 24 22 27 27 C 1.53002 * 117.49712 * 120.08596 * 25 24 22 28 28 C 1.38108 * 120.05378 * 359.74477 * 24 22 21 29 29 H 1.08995 * 109.47382 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46747 * 299.99960 * 1 2 3 31 31 H 1.08995 * 109.47250 * 59.99621 * 1 2 3 32 32 H 1.09003 * 109.46747 * 240.00040 * 2 1 3 33 33 H 1.08995 * 109.46873 * 119.99991 * 2 1 3 34 34 H 0.97006 * 120.00098 * 180.02562 * 8 7 5 35 35 H 0.96997 * 119.99922 * 94.99900 * 13 3 2 36 36 H 0.97001 * 119.99878 * 355.37367 * 18 16 14 37 37 H 1.07999 * 120.02379 * 359.97438 * 20 19 18 38 38 H 1.07994 * 119.97360 * 179.97438 * 21 20 19 39 39 H 1.08995 * 115.55234 * 334.41889 * 25 24 22 40 40 H 1.09001 * 117.49989 * 359.97438 * 26 25 24 41 41 H 1.09001 * 117.49766 * 145.02367 * 26 25 24 42 42 H 1.09001 * 117.49880 * 214.97570 * 27 25 24 43 43 H 1.08998 * 117.50220 * 359.97438 * 27 25 24 44 44 H 1.08000 * 120.02956 * 180.25368 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1432 0.8784 -1.2281 8 7 3.4061 0.3367 -2.1729 9 14 6.0049 0.8800 -1.3812 10 1 6.5539 -0.3520 -0.7599 11 1 6.3834 0.9215 -2.8166 12 1 6.5575 2.0719 -0.6890 13 7 1.6525 2.0974 1.2519 14 6 0.4331 2.6595 1.3690 15 8 -0.3420 2.6275 0.4357 16 6 0.0358 3.3218 2.6472 17 8 0.8109 3.3535 3.5807 18 7 -1.1834 3.8843 2.7641 19 6 -1.5921 4.4186 3.9897 20 6 -0.6681 5.0404 4.8204 21 6 -1.0741 5.5678 6.0300 22 6 -2.4013 5.4771 6.4159 23 9 -2.7963 5.9934 7.6002 24 6 -3.3239 4.8579 5.5896 25 6 -4.7671 4.7602 6.0125 26 6 -5.6954 3.8914 5.1613 27 6 -5.8137 5.4168 5.1100 28 6 -2.9235 4.3339 4.3761 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8292 -0.0618 -2.9496 35 1 2.2720 2.1231 1.9978 36 1 -1.7772 3.9184 1.9979 37 1 0.3669 5.1110 4.5202 38 1 -0.3562 6.0508 6.6762 39 1 -4.9445 4.7827 7.0877 40 1 -5.2624 3.3908 4.2953 41 1 -6.4838 3.3427 5.6766 42 1 -6.6798 5.8708 5.5914 43 1 -5.4584 5.9198 4.2106 44 1 -3.6442 3.8547 3.7301 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000439856439.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:05 Heat of formation + Delta-G solvation = -64.557703 kcal Electronic energy + Delta-G solvation = -28004.208335 eV Core-core repulsion = 23836.920775 eV Total energy + Delta-G solvation = -4167.287560 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.03392 -40.96857 -39.56224 -38.33861 -37.00974 -35.51728 -34.60789 -32.47163 -31.07589 -30.99010 -29.61271 -27.32509 -24.91773 -24.63480 -23.16581 -22.78403 -22.15095 -21.18086 -20.00287 -19.54895 -18.82013 -17.92275 -17.32634 -16.84968 -16.36977 -15.95553 -15.75194 -15.54565 -15.22747 -15.14077 -14.63617 -14.46761 -14.34108 -14.06246 -13.53642 -13.41663 -13.12753 -12.82651 -12.79099 -12.24138 -12.15131 -11.89470 -11.65827 -11.54426 -11.36870 -11.27529 -11.16891 -11.02833 -10.88944 -10.74467 -10.41079 -10.31998 -10.26445 -9.75422 -9.21310 -9.17581 -9.02773 -8.61484 -8.24377 -8.09521 -6.21590 -4.31475 0.76923 0.92347 1.75575 2.54493 3.16411 3.20975 3.28194 3.30904 3.58466 3.68318 3.97022 4.01451 4.15387 4.29208 4.42126 4.54765 4.63135 4.80592 4.96355 5.02015 5.04060 5.10858 5.25116 5.28839 5.49052 5.57547 5.69587 5.74212 5.94953 6.00842 6.02265 6.16773 6.26676 6.31244 6.50087 6.66962 6.88857 6.92790 7.06363 7.10124 7.21963 7.43141 7.58353 7.71820 7.80913 8.03336 8.36937 8.55672 8.80184 9.35533 10.83777 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.022565 B = 0.002359 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.584236 B =11868.095457 C =12806.423904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.130 4.130 3 C 0.268 3.732 4 H 0.055 0.945 5 C -0.538 4.538 6 H 0.064 0.936 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.904 3.096 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.273 1.273 13 N -0.666 5.666 14 C 0.495 3.505 15 O -0.528 6.528 16 C 0.508 3.492 17 O -0.504 6.504 18 N -0.651 5.651 19 C 0.145 3.855 20 C -0.097 4.097 21 C -0.129 4.129 22 C 0.085 3.915 23 F -0.139 7.139 24 C -0.066 4.066 25 C -0.120 4.120 26 C -0.173 4.173 27 C -0.166 4.166 28 C -0.119 4.119 29 H 0.026 0.974 30 H 0.034 0.966 31 H 0.052 0.948 32 H 0.104 0.896 33 H 0.035 0.965 34 H 0.266 0.734 35 H 0.402 0.598 36 H 0.424 0.576 37 H 0.152 0.848 38 H 0.140 0.860 39 H 0.117 0.883 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.099 0.901 43 H 0.098 0.902 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.002 8.617 13.912 22.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.167 3.833 4 H 0.073 0.927 5 C -0.576 4.576 6 H 0.083 0.917 7 C -0.135 4.135 8 N -0.519 5.519 9 Si 0.731 3.269 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.315 5.315 14 C 0.273 3.727 15 O -0.407 6.407 16 C 0.291 3.709 17 O -0.378 6.378 18 N -0.298 5.298 19 C 0.050 3.950 20 C -0.117 4.117 21 C -0.148 4.148 22 C 0.065 3.935 23 F -0.118 7.118 24 C -0.068 4.068 25 C -0.138 4.138 26 C -0.210 4.210 27 C -0.203 4.203 28 C -0.139 4.139 29 H 0.046 0.954 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.122 0.878 33 H 0.054 0.946 34 H 0.076 0.924 35 H 0.236 0.764 36 H 0.263 0.737 37 H 0.169 0.831 38 H 0.158 0.842 39 H 0.135 0.865 40 H 0.119 0.881 41 H 0.119 0.881 42 H 0.117 0.883 43 H 0.117 0.883 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -14.913 8.464 13.677 21.934 hybrid contribution 0.922 0.018 0.160 0.936 sum -13.990 8.483 13.837 21.428 Atomic orbital electron populations 1.21859 0.98302 0.98462 1.01003 1.21971 0.92652 0.99379 1.02831 1.19036 0.94840 0.89395 0.80023 0.92681 1.21198 0.90260 1.39539 1.06593 0.91745 1.24871 0.98861 0.94576 0.95214 1.69877 1.35304 1.37325 1.09372 0.86405 0.84483 0.78602 0.77412 1.20435 1.21012 1.19754 1.46480 1.13173 1.52553 1.19256 1.19532 0.84581 0.81641 0.86930 1.90751 1.51198 1.59356 1.39383 1.21075 0.81584 0.78478 0.89746 1.90725 1.50312 1.56518 1.40214 1.43222 1.17967 1.56826 1.11778 1.17734 0.93194 0.96501 0.87530 1.21229 1.01133 0.95772 0.93607 1.21040 0.94099 1.01907 0.97798 1.17425 0.92923 1.00174 0.82971 1.91469 1.91477 1.84780 1.44082 1.18845 0.93895 0.99861 0.94181 1.20890 0.87650 1.06857 0.98397 1.23112 1.01845 0.93607 1.02389 1.23067 1.00042 0.95581 1.01577 1.20664 0.94878 1.01964 0.96393 0.95443 0.94659 0.92912 0.87797 0.94634 0.92401 0.76352 0.73747 0.83085 0.84172 0.86501 0.88097 0.88141 0.88251 0.88319 0.84396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 8.51 37.16 0.32 -2.57 16 2 C -0.13 -3.00 5.45 -26.73 -0.15 -3.14 16 3 C 0.27 6.41 2.24 -69.08 -0.15 6.25 16 4 H 0.06 1.49 7.58 -51.93 -0.39 1.10 16 5 C -0.54 -13.72 8.73 -34.44 -0.30 -14.02 16 6 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -23.72 11.29 55.43 0.63 -23.10 16 9 Si 0.90 20.12 29.54 -169.99 -5.02 15.10 16 10 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 12 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 13 N -0.67 -13.51 5.02 -55.40 -0.28 -13.78 16 14 C 0.49 9.23 6.44 -11.64 -0.07 9.15 16 15 O -0.53 -10.67 13.60 5.49 0.07 -10.60 16 16 C 0.51 8.05 7.73 -11.64 -0.09 7.96 16 17 O -0.50 -8.59 13.91 5.47 0.08 -8.51 16 18 N -0.65 -8.29 5.32 -10.28 -0.05 -8.35 16 19 C 0.15 1.74 6.30 -83.72 -0.53 1.21 16 20 C -0.10 -1.18 8.69 -39.38 -0.34 -1.53 16 21 C -0.13 -1.39 10.02 -39.54 -0.40 -1.79 16 22 C 0.08 0.93 7.24 -39.40 -0.29 0.65 16 23 F -0.14 -1.56 16.60 2.25 0.04 -1.52 16 24 C -0.07 -0.68 5.62 -104.58 -0.59 -1.26 16 25 C -0.12 -1.01 5.79 -91.77 -0.53 -1.54 16 26 C -0.17 -1.19 9.86 -26.69 -0.26 -1.46 16 27 C -0.17 -1.14 10.16 -26.69 -0.27 -1.41 16 28 C -0.12 -1.20 9.21 -39.38 -0.36 -1.57 16 29 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.03 0.70 5.63 -51.93 -0.29 0.41 16 31 H 0.05 1.15 7.84 -51.93 -0.41 0.74 16 32 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 33 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 35 H 0.40 7.65 8.01 -40.82 -0.33 7.33 16 36 H 0.42 4.72 8.30 -40.82 -0.34 4.38 16 37 H 0.15 1.98 6.22 -52.49 -0.33 1.65 16 38 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 39 H 0.12 0.96 7.86 -51.93 -0.41 0.55 16 40 H 0.10 0.68 6.18 -51.93 -0.32 0.36 16 41 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.14 1.14 6.03 -52.49 -0.32 0.83 16 LS Contribution 368.30 15.07 5.55 5.55 Total: -1.00 -28.09 368.30 -8.62 -36.70 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -5.52 Total: 11.89 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: -4.11 Total: -3.38 kcal Atomic # 7 Polarization: -45.52 SS G_CDS: 0.29 Total: -45.23 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: 0.15 Total: -19.11 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.04 Total: -1.52 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -28.09 -8.62 -36.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439856439.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.853 kcal (2) G-P(sol) polarization free energy of solvation -28.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds