Wall clock time and date at job start Tue Mar 31 2020 18:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52991 * 109.47033 * 2 1 4 4 H 1.09003 * 109.47825 * 305.00317 * 3 2 1 5 5 C 1.50703 * 109.47226 * 184.99813 * 3 2 1 6 6 H 1.07995 * 120.00403 * 239.99974 * 5 3 2 7 7 C 1.37883 * 119.99369 * 60.00470 * 5 3 2 8 8 N 1.31508 * 120.00120 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99541 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47519 * 89.99875 * 9 7 5 11 11 H 1.48507 * 109.46762 * 209.99616 * 9 7 5 12 12 H 1.48495 * 109.47252 * 329.99437 * 9 7 5 13 13 N 1.46507 * 109.47317 * 65.00496 * 3 2 1 14 14 C 1.34778 * 119.99696 * 275.27505 * 13 3 2 15 15 O 1.21361 * 120.00133 * 359.71791 * 14 13 3 16 16 C 1.49341 * 119.99893 * 179.72564 * 14 13 3 17 17 O 1.21381 * 119.99987 * 359.97438 * 16 14 13 18 18 N 1.34778 * 119.99893 * 179.97438 * 16 14 13 19 19 C 1.39805 * 120.00023 * 175.37777 * 18 16 14 20 20 C 1.38944 * 120.05090 * 35.09531 * 19 18 16 21 21 C 1.38064 * 119.94887 * 179.97438 * 20 19 18 22 22 C 1.38517 * 120.05153 * 0.02562 * 21 20 19 23 23 F 1.35102 * 119.94874 * 179.97438 * 22 21 20 24 24 C 1.38465 * 120.10058 * 359.97438 * 22 21 20 25 25 C 1.50704 * 119.97263 * 179.97438 * 24 22 21 26 26 C 1.53004 * 117.49790 * 188.74750 * 25 24 22 27 27 C 1.53002 * 117.49712 * 120.08596 * 25 24 22 28 28 C 1.38108 * 120.05378 * 359.74477 * 24 22 21 29 29 H 1.08995 * 109.47382 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46747 * 299.99960 * 1 2 3 31 31 H 1.08995 * 109.47250 * 59.99621 * 1 2 3 32 32 H 1.09003 * 109.46747 * 240.00040 * 2 1 3 33 33 H 1.08995 * 109.46873 * 119.99991 * 2 1 3 34 34 H 0.97006 * 120.00098 * 180.02562 * 8 7 5 35 35 H 0.96997 * 119.99922 * 94.99900 * 13 3 2 36 36 H 0.97001 * 119.99878 * 355.37367 * 18 16 14 37 37 H 1.07999 * 120.02379 * 359.97438 * 20 19 18 38 38 H 1.07994 * 119.97360 * 179.97438 * 21 20 19 39 39 H 1.08995 * 115.55234 * 334.41889 * 25 24 22 40 40 H 1.09001 * 117.49989 * 359.97438 * 26 25 24 41 41 H 1.09001 * 117.49766 * 145.02367 * 26 25 24 42 42 H 1.09001 * 117.49880 * 214.97570 * 27 25 24 43 43 H 1.08998 * 117.50220 * 359.97438 * 27 25 24 44 44 H 1.08000 * 120.02956 * 180.25368 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1432 0.8784 -1.2281 8 7 3.4061 0.3367 -2.1729 9 14 6.0049 0.8800 -1.3812 10 1 6.5539 -0.3520 -0.7599 11 1 6.3834 0.9215 -2.8166 12 1 6.5575 2.0719 -0.6890 13 7 1.6525 2.0974 1.2519 14 6 0.4331 2.6595 1.3690 15 8 -0.3420 2.6275 0.4357 16 6 0.0358 3.3218 2.6472 17 8 0.8109 3.3535 3.5807 18 7 -1.1834 3.8843 2.7641 19 6 -1.5921 4.4186 3.9897 20 6 -0.6681 5.0404 4.8204 21 6 -1.0741 5.5678 6.0300 22 6 -2.4013 5.4771 6.4159 23 9 -2.7963 5.9934 7.6002 24 6 -3.3239 4.8579 5.5896 25 6 -4.7671 4.7602 6.0125 26 6 -5.6954 3.8914 5.1613 27 6 -5.8137 5.4168 5.1100 28 6 -2.9235 4.3339 4.3761 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8292 -0.0618 -2.9496 35 1 2.2720 2.1231 1.9978 36 1 -1.7772 3.9184 1.9979 37 1 0.3669 5.1110 4.5202 38 1 -0.3562 6.0508 6.6762 39 1 -4.9445 4.7827 7.0877 40 1 -5.2624 3.3908 4.2953 41 1 -6.4838 3.3427 5.6766 42 1 -6.6798 5.8708 5.5914 43 1 -5.4584 5.9198 4.2106 44 1 -3.6442 3.8547 3.7301 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000439856439.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:04 Heat of formation + Delta-G solvation = -80.226026 kcal Electronic energy + Delta-G solvation = -28004.887765 eV Core-core repulsion = 23836.920775 eV Total energy + Delta-G solvation = -4167.966990 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.90151 -42.17346 -40.69973 -39.58480 -37.81599 -37.18118 -35.77967 -34.31157 -32.82388 -31.82003 -30.59451 -29.15417 -26.34988 -25.42487 -24.82742 -23.53551 -22.99175 -22.34479 -21.40527 -20.95869 -20.18535 -18.83078 -18.45391 -18.18581 -17.59170 -17.42411 -16.95617 -16.87009 -16.60323 -16.06436 -15.99792 -15.43710 -15.29149 -15.23044 -14.99077 -14.61703 -14.43230 -14.14322 -13.86110 -13.68095 -13.47679 -13.20262 -12.98030 -12.90711 -12.75020 -12.65522 -12.42867 -12.18429 -12.13176 -12.11088 -11.91776 -11.60264 -11.34047 -11.20711 -11.09979 -10.65122 -10.53965 -9.86648 -9.84246 -9.17306 -8.18748 -6.35463 -0.21781 0.09507 0.47765 1.27715 1.45306 1.46905 1.56610 2.10440 2.38976 2.43033 2.71248 3.02162 3.11373 3.21056 3.43761 3.48075 3.66300 3.89865 4.03920 4.11633 4.19741 4.24789 4.36637 4.49221 4.55503 4.71614 4.73398 4.81488 4.95338 4.99694 5.02370 5.10383 5.12410 5.15878 5.22882 5.25548 5.30324 5.36024 5.39505 5.56326 5.66739 5.77009 5.80650 5.96719 6.11720 6.51684 6.67116 6.77580 7.10145 7.36508 8.86356 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.022565 B = 0.002359 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.584236 B =11868.095457 C =12806.423904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.124 4.124 3 C 0.276 3.724 4 H 0.017 0.983 5 C -0.553 4.553 6 H 0.068 0.932 7 C 0.022 3.978 8 N -0.910 5.910 9 Si 0.967 3.033 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.268 1.268 13 N -0.670 5.670 14 C 0.496 3.504 15 O -0.544 6.544 16 C 0.518 3.482 17 O -0.517 6.517 18 N -0.633 5.633 19 C 0.129 3.871 20 C -0.110 4.110 21 C -0.128 4.128 22 C 0.077 3.923 23 F -0.141 7.141 24 C -0.064 4.064 25 C -0.138 4.138 26 C -0.167 4.167 27 C -0.159 4.159 28 C -0.110 4.110 29 H 0.048 0.952 30 H 0.041 0.959 31 H 0.036 0.964 32 H 0.078 0.922 33 H 0.039 0.961 34 H 0.267 0.733 35 H 0.408 0.592 36 H 0.432 0.568 37 H 0.139 0.861 38 H 0.156 0.844 39 H 0.117 0.883 40 H 0.104 0.896 41 H 0.113 0.887 42 H 0.112 0.888 43 H 0.099 0.901 44 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.070 8.902 15.163 23.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.163 4.163 3 C 0.174 3.826 4 H 0.034 0.966 5 C -0.591 4.591 6 H 0.086 0.914 7 C -0.179 4.179 8 N -0.547 5.547 9 Si 0.792 3.208 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.193 1.193 13 N -0.320 5.320 14 C 0.276 3.724 15 O -0.423 6.423 16 C 0.300 3.700 17 O -0.392 6.392 18 N -0.280 5.280 19 C 0.035 3.965 20 C -0.130 4.130 21 C -0.147 4.147 22 C 0.057 3.943 23 F -0.120 7.120 24 C -0.066 4.066 25 C -0.157 4.157 26 C -0.203 4.203 27 C -0.195 4.195 28 C -0.130 4.130 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.097 0.903 33 H 0.058 0.942 34 H 0.076 0.924 35 H 0.244 0.756 36 H 0.272 0.728 37 H 0.157 0.843 38 H 0.174 0.826 39 H 0.135 0.865 40 H 0.122 0.878 41 H 0.131 0.869 42 H 0.131 0.869 43 H 0.117 0.883 44 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -16.020 8.774 14.955 23.606 hybrid contribution 1.137 -0.001 -0.173 1.150 sum -14.883 8.773 14.782 22.737 Atomic orbital electron populations 1.21712 0.96479 0.99694 1.00476 1.21826 0.94232 0.98580 1.01668 1.18641 0.94048 0.89567 0.80335 0.96555 1.21520 0.91272 1.39480 1.06844 0.91374 1.25664 1.03068 0.94228 0.94923 1.70004 1.36964 1.37956 1.09811 0.85415 0.79364 0.78766 0.77236 1.19804 1.20966 1.19252 1.46240 1.14205 1.53195 1.18347 1.19941 0.83695 0.80916 0.87845 1.90740 1.51500 1.59682 1.40401 1.20339 0.82591 0.78889 0.88193 1.90733 1.50982 1.57382 1.40110 1.43017 1.16784 1.55624 1.12618 1.17864 0.94045 0.97449 0.87159 1.21185 1.00724 0.96754 0.94339 1.21169 0.94545 1.01534 0.97480 1.17595 0.93220 1.00354 0.83098 1.91464 1.91480 1.84826 1.44201 1.19084 0.94867 0.98819 0.93809 1.20943 0.86883 1.09006 0.98824 1.23218 1.01352 0.93783 1.01953 1.23157 0.99578 0.95780 1.01027 1.20816 0.94310 1.01306 0.96558 0.93294 0.94027 0.94456 0.90337 0.94233 0.92378 0.75605 0.72768 0.84299 0.82603 0.86472 0.87826 0.86885 0.86929 0.88287 0.82349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.21 8.51 71.98 0.61 -4.60 16 2 C -0.12 -5.81 5.45 30.59 0.17 -5.64 16 3 C 0.28 13.51 2.24 44.24 0.10 13.61 16 4 H 0.02 0.93 7.58 -2.39 -0.02 0.91 16 5 C -0.55 -28.56 8.73 25.60 0.22 -28.33 16 6 H 0.07 3.38 7.74 -2.91 -0.02 3.36 16 7 C 0.02 1.15 5.29 84.66 0.45 1.60 16 8 N -0.91 -49.85 11.29 21.45 0.24 -49.60 16 9 Si 0.97 41.28 29.54 68.60 2.03 43.31 16 10 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 11 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 12 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 13 N -0.67 -27.44 5.02 -447.53 -2.25 -29.69 16 14 C 0.50 18.49 6.44 87.24 0.56 19.05 16 15 O -0.54 -22.03 13.60 -3.28 -0.04 -22.08 16 16 C 0.52 16.10 7.73 87.24 0.67 16.77 16 17 O -0.52 -17.37 13.91 -3.34 -0.05 -17.42 16 18 N -0.63 -15.43 5.32 -304.79 -1.62 -17.05 16 19 C 0.13 2.91 6.30 38.20 0.24 3.15 16 20 C -0.11 -2.60 8.69 22.40 0.19 -2.40 16 21 C -0.13 -2.63 10.02 22.29 0.22 -2.40 16 22 C 0.08 1.59 7.24 22.39 0.16 1.75 16 23 F -0.14 -2.97 16.60 44.97 0.75 -2.22 16 24 C -0.06 -1.19 5.62 -19.84 -0.11 -1.30 16 25 C -0.14 -2.02 5.79 -11.54 -0.07 -2.09 16 26 C -0.17 -1.83 9.86 30.62 0.30 -1.53 16 27 C -0.16 -1.76 10.16 30.62 0.31 -1.45 16 28 C -0.11 -2.01 9.21 22.40 0.21 -1.81 16 29 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.04 1.63 5.63 -2.39 -0.01 1.62 16 31 H 0.04 1.63 7.84 -2.39 -0.02 1.61 16 32 H 0.08 4.11 5.95 -2.39 -0.01 4.09 16 33 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.27 13.88 8.31 -92.70 -0.77 13.11 16 35 H 0.41 15.61 8.01 -92.71 -0.74 14.87 16 36 H 0.43 9.04 8.30 -92.71 -0.77 8.27 16 37 H 0.14 3.63 6.22 -2.91 -0.02 3.61 16 38 H 0.16 2.58 8.06 -2.91 -0.02 2.55 16 39 H 0.12 1.70 7.86 -2.39 -0.02 1.68 16 40 H 0.10 1.08 6.18 -2.39 -0.01 1.07 16 41 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.16 2.19 6.03 -2.91 -0.02 2.17 16 Total: -1.00 -60.18 368.30 2.87 -57.31 By element: Atomic # 1 Polarization: 33.50 SS G_CDS: -0.44 Total: 33.06 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: 4.25 Total: 4.38 kcal Atomic # 7 Polarization: -92.72 SS G_CDS: -3.63 Total: -96.34 kcal Atomic # 8 Polarization: -39.41 SS G_CDS: -0.09 Total: -39.50 kcal Atomic # 9 Polarization: -2.97 SS G_CDS: 0.75 Total: -2.22 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.31 kcal Total: -60.18 2.87 -57.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439856439.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.914 kcal (2) G-P(sol) polarization free energy of solvation -60.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds