Wall clock time and date at job start Tue Mar 31 2020 18:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47431 * 2 1 4 4 H 1.08997 * 109.46797 * 55.00614 * 3 2 1 5 5 C 1.50703 * 109.47285 * 174.99865 * 3 2 1 6 6 H 1.07996 * 119.99733 * 119.99799 * 5 3 2 7 7 C 1.37880 * 119.99968 * 300.00787 * 5 3 2 8 8 N 1.31507 * 120.00182 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99712 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47232 * 89.99313 * 9 7 5 11 11 H 1.48496 * 109.46903 * 209.99694 * 9 7 5 12 12 H 1.48500 * 109.46963 * 329.99293 * 9 7 5 13 13 N 1.46495 * 109.47539 * 295.00232 * 3 2 1 14 14 C 1.34777 * 119.99787 * 84.99492 * 13 3 2 15 15 O 1.21359 * 120.00326 * 0.02562 * 14 13 3 16 16 C 1.49342 * 119.99871 * 180.02562 * 14 13 3 17 17 O 1.21380 * 119.99958 * 0.02562 * 16 14 13 18 18 N 1.34777 * 119.99871 * 179.97438 * 16 14 13 19 19 C 1.39817 * 120.00007 * 185.27419 * 18 16 14 20 20 C 1.38937 * 120.04712 * 33.33390 * 19 18 16 21 21 C 1.38071 * 119.94916 * 180.02562 * 20 19 18 22 22 C 1.38511 * 120.04916 * 0.02562 * 21 20 19 23 23 F 1.35104 * 119.95097 * 180.02562 * 22 21 20 24 24 C 1.38467 * 120.10420 * 359.97438 * 22 21 20 25 25 C 1.50696 * 119.98188 * 179.97438 * 24 22 21 26 26 C 1.52998 * 117.50206 * 240.00827 * 25 24 22 27 27 C 1.53000 * 60.03187 * 252.51489 * 26 25 24 28 28 C 1.38122 * 120.04815 * 0.25795 * 24 22 21 29 29 H 1.08998 * 109.46915 * 300.00014 * 1 2 3 30 30 H 1.09000 * 109.47030 * 59.99748 * 1 2 3 31 31 H 1.08996 * 109.47308 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47134 * 240.00268 * 2 1 3 33 33 H 1.09004 * 109.47664 * 120.00604 * 2 1 3 34 34 H 0.96997 * 120.00350 * 180.02562 * 8 7 5 35 35 H 0.96999 * 120.00037 * 264.99984 * 13 3 2 36 36 H 0.96999 * 120.00533 * 5.27967 * 18 16 14 37 37 H 1.08000 * 120.02989 * 0.04760 * 20 19 18 38 38 H 1.08000 * 119.97430 * 179.97438 * 21 20 19 39 39 H 1.09009 * 115.55783 * 25.68829 * 25 24 22 40 40 H 1.08997 * 117.50103 * 145.01446 * 26 25 24 41 41 H 1.08998 * 117.49823 * 0.02562 * 26 25 24 42 42 H 1.08997 * 117.50230 * 107.47184 * 27 26 25 43 43 H 1.09001 * 117.49780 * 252.47730 * 27 26 25 44 44 H 1.08000 * 120.02514 * 179.74111 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5420 1.4442 0.1239 6 1 4.1472 1.8887 -0.6523 7 6 4.1433 0.8782 1.2280 8 7 3.4063 0.3372 2.1732 9 14 6.0051 0.8798 1.3811 10 1 6.4429 2.1126 2.0836 11 1 6.4391 -0.3113 2.1544 12 1 6.6131 0.8392 0.0269 13 7 1.6525 2.0976 -1.2517 14 6 0.4352 2.6645 -1.3668 15 8 -0.3397 2.6327 -0.4334 16 6 0.0399 3.3318 -2.6430 17 8 0.8148 3.3632 -3.5768 18 7 -1.1776 3.8983 -2.7582 19 6 -1.5900 4.4253 -3.9858 20 6 -1.1753 3.8326 -5.1720 21 6 -1.5834 4.3551 -6.3831 22 6 -2.4052 5.4696 -6.4162 23 9 -2.8037 5.9789 -7.6024 24 6 -2.8198 6.0620 -5.2353 25 6 -3.7134 7.2748 -5.2744 26 6 -3.1884 8.5602 -4.6320 27 6 -4.3008 7.7631 -3.9479 28 6 -2.4101 5.5456 -4.0214 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.8293 -0.0607 2.9501 35 1 2.2720 2.1232 -1.9977 36 1 -1.7677 3.9404 -1.9896 37 1 -0.5345 2.9636 -5.1468 38 1 -1.2609 3.8949 -7.3054 39 1 -4.3324 7.3743 -6.1662 40 1 -3.4619 9.5054 -5.1009 41 1 -2.1964 8.5289 -4.1813 42 1 -4.0406 7.2068 -3.0474 43 1 -5.3061 8.1839 -3.9666 44 1 -2.7304 6.0105 -3.1007 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000439856440.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:09 Heat of formation + Delta-G solvation = -65.174313 kcal Electronic energy + Delta-G solvation = -27993.042207 eV Core-core repulsion = 23825.727909 eV Total energy + Delta-G solvation = -4167.314298 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.03345 -40.97056 -39.56435 -38.33532 -37.01671 -35.51910 -34.61021 -32.47302 -31.07787 -31.00153 -29.61153 -27.32701 -24.92148 -24.65349 -23.16582 -22.77948 -22.15706 -21.18498 -19.98300 -19.54932 -18.82494 -17.93894 -17.31284 -16.86703 -16.33176 -15.92434 -15.81797 -15.62612 -15.26159 -15.01601 -14.64053 -14.47006 -14.34205 -14.03595 -13.55057 -13.46472 -13.10878 -12.80701 -12.75845 -12.26828 -12.15331 -11.85976 -11.68197 -11.60598 -11.38038 -11.28308 -11.17943 -11.01433 -10.91870 -10.72394 -10.41554 -10.31826 -10.28527 -9.74970 -9.20339 -9.18039 -9.05479 -8.60955 -8.23263 -8.09733 -6.21676 -4.31572 0.75970 0.91628 1.76356 2.53670 3.16618 3.21080 3.28174 3.30830 3.57364 3.68940 3.96145 4.02528 4.15430 4.28994 4.41276 4.54367 4.64106 4.78854 4.95788 5.00678 5.02884 5.10786 5.24869 5.29752 5.48460 5.57426 5.69141 5.74901 5.93410 5.98909 6.00691 6.16381 6.26502 6.31003 6.49975 6.65481 6.88567 6.92571 7.06242 7.09970 7.21783 7.42906 7.58297 7.71623 7.80596 8.03214 8.36733 8.55545 8.80078 9.35484 10.83732 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.020832 B = 0.002298 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.757741 B =12180.817095 C =12325.611732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C 0.268 3.732 4 H 0.055 0.945 5 C -0.538 4.538 6 H 0.064 0.936 7 C 0.069 3.931 8 N -0.882 5.882 9 Si 0.904 3.096 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.272 1.272 13 N -0.666 5.666 14 C 0.494 3.506 15 O -0.528 6.528 16 C 0.508 3.492 17 O -0.503 6.503 18 N -0.651 5.651 19 C 0.149 3.851 20 C -0.098 4.098 21 C -0.127 4.127 22 C 0.084 3.916 23 F -0.139 7.139 24 C -0.065 4.065 25 C -0.120 4.120 26 C -0.166 4.166 27 C -0.173 4.173 28 C -0.120 4.120 29 H 0.052 0.948 30 H 0.034 0.966 31 H 0.027 0.973 32 H 0.035 0.965 33 H 0.104 0.896 34 H 0.266 0.734 35 H 0.402 0.598 36 H 0.424 0.576 37 H 0.147 0.853 38 H 0.141 0.859 39 H 0.117 0.883 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.101 0.899 43 H 0.100 0.900 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.860 10.621 -13.453 22.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.167 3.833 4 H 0.073 0.927 5 C -0.576 4.576 6 H 0.082 0.918 7 C -0.135 4.135 8 N -0.519 5.519 9 Si 0.731 3.269 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.197 1.197 13 N -0.315 5.315 14 C 0.273 3.727 15 O -0.407 6.407 16 C 0.291 3.709 17 O -0.376 6.376 18 N -0.298 5.298 19 C 0.054 3.946 20 C -0.118 4.118 21 C -0.146 4.146 22 C 0.064 3.936 23 F -0.118 7.118 24 C -0.066 4.066 25 C -0.138 4.138 26 C -0.203 4.203 27 C -0.209 4.209 28 C -0.140 4.140 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.046 0.954 32 H 0.054 0.946 33 H 0.122 0.878 34 H 0.076 0.924 35 H 0.236 0.764 36 H 0.263 0.737 37 H 0.164 0.836 38 H 0.158 0.842 39 H 0.135 0.865 40 H 0.118 0.882 41 H 0.117 0.883 42 H 0.119 0.881 43 H 0.119 0.881 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -13.768 10.456 -13.224 21.766 hybrid contribution 0.918 0.063 -0.124 0.928 sum -12.850 10.519 -13.348 21.306 Atomic orbital electron populations 1.21854 0.98285 0.98471 1.01004 1.21969 0.92653 0.99362 1.02831 1.19034 0.94836 0.89410 0.80024 0.92696 1.21200 0.90268 1.39515 1.06624 0.91751 1.24869 0.98858 0.94543 0.95234 1.69873 1.35321 1.37382 1.09308 0.86406 0.84472 0.77706 0.78332 1.20482 1.20993 1.19717 1.46479 1.13286 1.52429 1.19274 1.19539 0.84596 0.81622 0.86964 1.90751 1.51102 1.59543 1.39270 1.21078 0.81305 0.78656 0.89897 1.90747 1.50411 1.55965 1.40512 1.43263 1.17494 1.57368 1.11724 1.17713 0.97569 0.93629 0.85689 1.21070 1.00151 1.00606 0.89959 1.21008 0.98435 0.95855 0.99343 1.17404 0.99953 0.95840 0.80390 1.91469 1.89277 1.86600 1.44452 1.18850 0.99394 0.96941 0.91453 1.20899 1.01666 0.92737 0.98515 1.23061 0.99328 0.94562 1.03330 1.23102 0.98668 1.03606 0.95553 1.20647 1.00664 0.94783 0.97954 0.92918 0.94665 0.95427 0.94627 0.87801 0.92397 0.76353 0.73734 0.83573 0.84153 0.86482 0.88224 0.88299 0.88122 0.88141 0.84398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 8.51 37.16 0.32 -2.56 16 2 C -0.13 -2.98 5.45 -26.73 -0.15 -3.13 16 3 C 0.27 6.40 2.24 -69.08 -0.15 6.25 16 4 H 0.06 1.49 7.58 -51.93 -0.39 1.10 16 5 C -0.54 -13.74 8.73 -34.44 -0.30 -14.04 16 6 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -23.73 11.29 55.43 0.63 -23.10 16 9 Si 0.90 20.14 29.54 -169.99 -5.02 15.12 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 12 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 13 N -0.67 -13.50 5.01 -55.40 -0.28 -13.78 16 14 C 0.49 9.22 6.45 -11.64 -0.08 9.15 16 15 O -0.53 -10.68 13.62 5.49 0.07 -10.60 16 16 C 0.51 8.05 7.62 -11.64 -0.09 7.96 16 17 O -0.50 -8.61 14.16 5.47 0.08 -8.53 16 18 N -0.65 -8.31 5.33 -10.28 -0.05 -8.37 16 19 C 0.15 1.78 6.28 -83.72 -0.53 1.25 16 20 C -0.10 -1.19 8.65 -39.38 -0.34 -1.53 16 21 C -0.13 -1.37 10.02 -39.54 -0.40 -1.76 16 22 C 0.08 0.92 7.24 -39.40 -0.29 0.64 16 23 F -0.14 -1.56 16.60 2.25 0.04 -1.52 16 24 C -0.06 -0.66 5.62 -104.58 -0.59 -1.25 16 25 C -0.12 -1.00 5.80 -91.74 -0.53 -1.54 16 26 C -0.17 -1.21 10.16 -26.73 -0.27 -1.48 16 27 C -0.17 -1.17 9.86 -26.69 -0.26 -1.43 16 28 C -0.12 -1.22 9.21 -39.38 -0.36 -1.58 16 29 H 0.05 1.15 7.85 -51.93 -0.41 0.74 16 30 H 0.03 0.70 5.65 -51.93 -0.29 0.41 16 31 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 34 H 0.27 6.81 8.31 -40.82 -0.34 6.48 16 35 H 0.40 7.66 8.01 -40.82 -0.33 7.33 16 36 H 0.42 4.73 8.30 -40.82 -0.34 4.39 16 37 H 0.15 1.90 6.41 -52.49 -0.34 1.56 16 38 H 0.14 1.24 8.06 -52.49 -0.42 0.81 16 39 H 0.12 0.94 7.86 -51.92 -0.41 0.53 16 40 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.10 0.65 6.18 -51.93 -0.32 0.33 16 43 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.14 1.13 6.02 -52.49 -0.32 0.81 16 LS Contribution 368.62 15.07 5.56 5.56 Total: -1.00 -28.16 368.62 -8.62 -36.78 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: -5.53 Total: 11.81 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: -4.11 Total: -3.36 kcal Atomic # 7 Polarization: -45.54 SS G_CDS: 0.29 Total: -45.25 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: 0.15 Total: -19.14 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.04 Total: -1.52 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -28.16 -8.62 -36.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439856440.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.391 kcal (2) G-P(sol) polarization free energy of solvation -28.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds