Wall clock time and date at job start Tue Mar 31 2020 18:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47431 * 2 1 4 4 H 1.08997 * 109.46797 * 55.00614 * 3 2 1 5 5 C 1.50703 * 109.47285 * 174.99865 * 3 2 1 6 6 H 1.07996 * 119.99733 * 119.99799 * 5 3 2 7 7 C 1.37880 * 119.99968 * 300.00787 * 5 3 2 8 8 N 1.31507 * 120.00182 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99712 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47232 * 89.99313 * 9 7 5 11 11 H 1.48496 * 109.46903 * 209.99694 * 9 7 5 12 12 H 1.48500 * 109.46963 * 329.99293 * 9 7 5 13 13 N 1.46495 * 109.47539 * 295.00232 * 3 2 1 14 14 C 1.34777 * 119.99787 * 84.99492 * 13 3 2 15 15 O 1.21359 * 120.00326 * 0.02562 * 14 13 3 16 16 C 1.49342 * 119.99871 * 180.02562 * 14 13 3 17 17 O 1.21380 * 119.99958 * 0.02562 * 16 14 13 18 18 N 1.34777 * 119.99871 * 179.97438 * 16 14 13 19 19 C 1.39817 * 120.00007 * 185.27419 * 18 16 14 20 20 C 1.38937 * 120.04712 * 33.33390 * 19 18 16 21 21 C 1.38071 * 119.94916 * 180.02562 * 20 19 18 22 22 C 1.38511 * 120.04916 * 0.02562 * 21 20 19 23 23 F 1.35104 * 119.95097 * 180.02562 * 22 21 20 24 24 C 1.38467 * 120.10420 * 359.97438 * 22 21 20 25 25 C 1.50696 * 119.98188 * 179.97438 * 24 22 21 26 26 C 1.52998 * 117.50206 * 240.00827 * 25 24 22 27 27 C 1.53000 * 60.03187 * 252.51489 * 26 25 24 28 28 C 1.38122 * 120.04815 * 0.25795 * 24 22 21 29 29 H 1.08998 * 109.46915 * 300.00014 * 1 2 3 30 30 H 1.09000 * 109.47030 * 59.99748 * 1 2 3 31 31 H 1.08996 * 109.47308 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47134 * 240.00268 * 2 1 3 33 33 H 1.09004 * 109.47664 * 120.00604 * 2 1 3 34 34 H 0.96997 * 120.00350 * 180.02562 * 8 7 5 35 35 H 0.96999 * 120.00037 * 264.99984 * 13 3 2 36 36 H 0.96999 * 120.00533 * 5.27967 * 18 16 14 37 37 H 1.08000 * 120.02989 * 0.04760 * 20 19 18 38 38 H 1.08000 * 119.97430 * 179.97438 * 21 20 19 39 39 H 1.09009 * 115.55783 * 25.68829 * 25 24 22 40 40 H 1.08997 * 117.50103 * 145.01446 * 26 25 24 41 41 H 1.08998 * 117.49823 * 0.02562 * 26 25 24 42 42 H 1.08997 * 117.50230 * 107.47184 * 27 26 25 43 43 H 1.09001 * 117.49780 * 252.47730 * 27 26 25 44 44 H 1.08000 * 120.02514 * 179.74111 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5420 1.4442 0.1239 6 1 4.1472 1.8887 -0.6523 7 6 4.1433 0.8782 1.2280 8 7 3.4063 0.3372 2.1732 9 14 6.0051 0.8798 1.3811 10 1 6.4429 2.1126 2.0836 11 1 6.4391 -0.3113 2.1544 12 1 6.6131 0.8392 0.0269 13 7 1.6525 2.0976 -1.2517 14 6 0.4352 2.6645 -1.3668 15 8 -0.3397 2.6327 -0.4334 16 6 0.0399 3.3318 -2.6430 17 8 0.8148 3.3632 -3.5768 18 7 -1.1776 3.8983 -2.7582 19 6 -1.5900 4.4253 -3.9858 20 6 -1.1753 3.8326 -5.1720 21 6 -1.5834 4.3551 -6.3831 22 6 -2.4052 5.4696 -6.4162 23 9 -2.8037 5.9789 -7.6024 24 6 -2.8198 6.0620 -5.2353 25 6 -3.7134 7.2748 -5.2744 26 6 -3.1884 8.5602 -4.6320 27 6 -4.3008 7.7631 -3.9479 28 6 -2.4101 5.5456 -4.0214 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.8293 -0.0607 2.9501 35 1 2.2720 2.1232 -1.9977 36 1 -1.7677 3.9404 -1.9896 37 1 -0.5345 2.9636 -5.1468 38 1 -1.2609 3.8949 -7.3054 39 1 -4.3324 7.3743 -6.1662 40 1 -3.4619 9.5054 -5.1009 41 1 -2.1964 8.5289 -4.1813 42 1 -4.0406 7.2068 -3.0474 43 1 -5.3061 8.1839 -3.9666 44 1 -2.7304 6.0105 -3.1007 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000439856440.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:08 Heat of formation + Delta-G solvation = -80.932771 kcal Electronic energy + Delta-G solvation = -27993.725546 eV Core-core repulsion = 23825.727909 eV Total energy + Delta-G solvation = -4167.997636 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.89998 -42.17659 -40.70166 -39.58610 -37.82704 -37.18403 -35.78226 -34.31422 -32.82518 -31.83221 -30.59206 -29.15726 -26.35659 -25.44243 -24.82801 -23.54262 -22.99576 -22.35302 -21.40486 -20.93796 -20.19103 -18.84628 -18.44489 -18.19436 -17.65032 -17.31265 -17.08249 -16.80422 -16.62855 -16.07379 -15.95101 -15.44470 -15.29190 -15.22017 -15.02649 -14.61972 -14.45921 -14.09079 -13.86218 -13.65947 -13.47912 -13.20708 -12.97697 -12.95334 -12.74445 -12.69078 -12.38363 -12.29509 -12.14945 -12.10980 -11.89908 -11.59603 -11.31396 -11.24835 -11.10912 -10.65573 -10.53674 -9.88147 -9.84226 -9.16105 -8.18912 -6.35672 -0.23365 0.08893 0.49252 1.26764 1.45097 1.46787 1.56582 2.09572 2.38949 2.43708 2.70458 3.01133 3.11266 3.21670 3.43734 3.47596 3.65273 3.89225 4.03490 4.10312 4.17514 4.24308 4.36266 4.49134 4.55413 4.71598 4.72662 4.80662 4.94029 4.98999 5.02207 5.09303 5.10889 5.14565 5.22710 5.24819 5.30142 5.35896 5.39329 5.56189 5.66248 5.76358 5.80383 5.96497 6.11655 6.51244 6.66942 6.77155 7.09873 7.36343 8.86240 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.020832 B = 0.002298 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.757741 B =12180.817095 C =12325.611732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.124 4.124 3 C 0.276 3.724 4 H 0.016 0.984 5 C -0.553 4.553 6 H 0.068 0.932 7 C 0.022 3.978 8 N -0.910 5.910 9 Si 0.967 3.033 10 H -0.278 1.278 11 H -0.282 1.282 12 H -0.265 1.265 13 N -0.670 5.670 14 C 0.496 3.504 15 O -0.544 6.544 16 C 0.518 3.482 17 O -0.517 6.517 18 N -0.634 5.634 19 C 0.132 3.868 20 C -0.110 4.110 21 C -0.126 4.126 22 C 0.076 3.924 23 F -0.141 7.141 24 C -0.063 4.063 25 C -0.136 4.136 26 C -0.165 4.165 27 C -0.162 4.162 28 C -0.112 4.112 29 H 0.036 0.964 30 H 0.041 0.959 31 H 0.048 0.952 32 H 0.040 0.960 33 H 0.078 0.922 34 H 0.267 0.733 35 H 0.408 0.592 36 H 0.432 0.568 37 H 0.135 0.865 38 H 0.157 0.843 39 H 0.120 0.880 40 H 0.112 0.888 41 H 0.093 0.907 42 H 0.105 0.895 43 H 0.116 0.884 44 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.551 11.721 -14.491 23.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.163 4.163 3 C 0.174 3.826 4 H 0.034 0.966 5 C -0.591 4.591 6 H 0.086 0.914 7 C -0.179 4.179 8 N -0.547 5.547 9 Si 0.792 3.208 10 H -0.203 1.203 11 H -0.207 1.207 12 H -0.189 1.189 13 N -0.320 5.320 14 C 0.276 3.724 15 O -0.423 6.423 16 C 0.300 3.700 17 O -0.392 6.392 18 N -0.281 5.281 19 C 0.038 3.962 20 C -0.131 4.131 21 C -0.145 4.145 22 C 0.057 3.943 23 F -0.120 7.120 24 C -0.065 4.065 25 C -0.154 4.154 26 C -0.202 4.202 27 C -0.199 4.199 28 C -0.132 4.132 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.097 0.903 34 H 0.076 0.924 35 H 0.244 0.756 36 H 0.272 0.728 37 H 0.153 0.847 38 H 0.175 0.825 39 H 0.138 0.862 40 H 0.131 0.869 41 H 0.111 0.889 42 H 0.123 0.877 43 H 0.134 0.866 44 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -14.498 11.581 -14.289 23.419 hybrid contribution 1.024 -0.199 0.146 1.053 sum -13.474 11.382 -14.143 22.608 Atomic orbital electron populations 1.21707 0.96492 0.99695 1.00458 1.21824 0.94201 0.98557 1.01700 1.18639 0.94034 0.89593 0.80328 0.96582 1.21522 0.91283 1.39463 1.06874 0.91393 1.25659 1.03059 0.94193 0.94941 1.70000 1.36985 1.38003 1.09749 0.85421 0.79373 0.77568 0.78465 1.20331 1.20730 1.18935 1.46238 1.14315 1.53059 1.18362 1.19945 0.83706 0.80909 0.87865 1.90740 1.51410 1.59868 1.40303 1.20334 0.82258 0.79087 0.88315 1.90752 1.51115 1.56901 1.40391 1.43058 1.16335 1.56178 1.12541 1.17850 0.98731 0.94677 0.84971 1.21051 1.00617 1.00736 0.90647 1.21145 0.98071 0.95753 0.99569 1.17577 1.00073 0.96015 0.80677 1.91465 1.89287 1.86607 1.44591 1.19092 0.99052 0.97295 0.91062 1.20954 1.02215 0.92533 0.99745 1.23133 0.99366 0.94587 1.03112 1.23220 0.99301 1.02728 0.94618 1.20808 0.99574 0.93882 0.98891 0.94498 0.94035 0.93285 0.94158 0.90346 0.92368 0.75606 0.72761 0.84673 0.82540 0.86236 0.86936 0.88896 0.87691 0.86616 0.82334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.21 8.51 71.98 0.61 -4.60 16 2 C -0.12 -5.79 5.45 30.59 0.17 -5.62 16 3 C 0.28 13.51 2.24 44.25 0.10 13.61 16 4 H 0.02 0.92 7.58 -2.39 -0.02 0.90 16 5 C -0.55 -28.59 8.73 25.60 0.22 -28.36 16 6 H 0.07 3.38 7.74 -2.91 -0.02 3.35 16 7 C 0.02 1.17 5.29 84.66 0.45 1.62 16 8 N -0.91 -49.86 11.29 21.45 0.24 -49.61 16 9 Si 0.97 41.29 29.54 68.60 2.03 43.31 16 10 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 11 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 12 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 13 N -0.67 -27.43 5.01 -447.55 -2.24 -29.67 16 14 C 0.50 18.49 6.45 87.24 0.56 19.06 16 15 O -0.54 -22.07 13.62 -3.28 -0.04 -22.12 16 16 C 0.52 16.12 7.62 87.24 0.67 16.78 16 17 O -0.52 -17.44 14.16 -3.34 -0.05 -17.49 16 18 N -0.63 -15.48 5.33 -304.80 -1.62 -17.10 16 19 C 0.13 2.98 6.28 38.19 0.24 3.22 16 20 C -0.11 -2.59 8.65 22.40 0.19 -2.40 16 21 C -0.13 -2.58 10.02 22.30 0.22 -2.35 16 22 C 0.08 1.57 7.24 22.39 0.16 1.73 16 23 F -0.14 -2.95 16.60 44.97 0.75 -2.20 16 24 C -0.06 -1.17 5.62 -19.84 -0.11 -1.29 16 25 C -0.14 -1.98 5.80 -11.52 -0.07 -2.05 16 26 C -0.17 -2.01 10.16 30.59 0.31 -1.70 16 27 C -0.16 -1.73 9.86 30.62 0.30 -1.43 16 28 C -0.11 -2.04 9.21 22.40 0.21 -1.84 16 29 H 0.04 1.61 7.85 -2.39 -0.02 1.59 16 30 H 0.04 1.63 5.65 -2.39 -0.01 1.62 16 31 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 33 H 0.08 4.10 5.95 -2.39 -0.01 4.09 16 34 H 0.27 13.88 8.31 -92.71 -0.77 13.11 16 35 H 0.41 15.61 8.01 -92.71 -0.74 14.87 16 36 H 0.43 9.06 8.30 -92.71 -0.77 8.29 16 37 H 0.14 3.48 6.41 -2.91 -0.02 3.46 16 38 H 0.16 2.56 8.06 -2.91 -0.02 2.54 16 39 H 0.12 1.68 7.86 -2.38 -0.02 1.66 16 40 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.09 1.25 8.14 -2.39 -0.02 1.24 16 42 H 0.10 1.03 6.18 -2.39 -0.01 1.02 16 43 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.16 2.18 6.02 -2.91 -0.02 2.16 16 Total: -1.00 -60.35 368.62 2.85 -57.50 By element: Atomic # 1 Polarization: 33.45 SS G_CDS: -0.44 Total: 33.01 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: 4.24 Total: 4.37 kcal Atomic # 7 Polarization: -92.76 SS G_CDS: -3.63 Total: -96.38 kcal Atomic # 8 Polarization: -39.51 SS G_CDS: -0.09 Total: -39.60 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.75 Total: -2.20 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.31 kcal Total: -60.35 2.85 -57.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439856440.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.433 kcal (2) G-P(sol) polarization free energy of solvation -60.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds