Wall clock time and date at job start Tue Mar 31 2020 18:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47041 * 2 1 4 4 C 1.50694 * 109.47362 * 239.99798 * 2 1 3 5 5 H 1.07997 * 120.00412 * 237.00929 * 4 2 1 6 6 C 1.37880 * 120.00093 * 57.00785 * 4 2 1 7 7 N 1.31517 * 119.99921 * 5.54257 * 6 4 2 8 8 Si 1.86797 * 120.00212 * 185.54188 * 6 4 2 9 9 H 1.48504 * 109.46997 * 84.99765 * 8 6 4 10 10 H 1.48496 * 109.47339 * 204.99930 * 8 6 4 11 11 H 1.48498 * 109.47248 * 324.99919 * 8 6 4 12 12 C 1.53000 * 109.47064 * 119.99787 * 2 1 3 13 13 N 1.46504 * 109.47049 * 300.00601 * 12 2 1 14 14 C 1.34780 * 119.99786 * 180.02562 * 13 12 2 15 15 O 1.21274 * 120.00075 * 359.97438 * 14 13 12 16 16 C 1.50704 * 119.99739 * 179.97438 * 14 13 12 17 17 H 1.09001 * 110.85833 * 307.34272 * 16 14 13 18 18 C 1.54733 * 111.00485 * 71.16522 * 16 14 13 19 19 C 1.51689 * 102.54862 * 142.35020 * 18 16 14 20 20 C 1.47649 * 125.86526 * 164.62943 * 19 18 16 21 21 C 1.39639 * 120.13509 * 180.02562 * 20 19 18 22 22 C 1.37942 * 119.89959 * 180.02562 * 21 20 19 23 23 C 1.38342 * 120.17593 * 0.02562 * 22 21 20 24 24 C 1.38550 * 120.27840 * 359.95630 * 23 22 21 25 25 F 1.35095 * 119.95303 * 180.02562 * 24 23 22 26 26 C 1.38211 * 120.09501 * 359.76957 * 24 23 22 27 27 N 1.29086 * 108.26752 * 344.60881 * 19 18 16 28 28 O 1.41388 * 112.87176 * 359.67875 * 27 19 18 29 29 H 1.08999 * 109.47337 * 293.93360 * 1 2 3 30 30 H 1.09006 * 109.47275 * 53.93747 * 1 2 3 31 31 H 1.09002 * 109.47105 * 173.93405 * 1 2 3 32 32 H 1.09000 * 109.47106 * 179.97438 * 3 2 1 33 33 H 1.09007 * 109.47240 * 299.99745 * 3 2 1 34 34 H 1.09006 * 109.47285 * 59.99527 * 3 2 1 35 35 H 0.96997 * 119.99816 * 180.02562 * 7 6 4 36 36 H 1.09000 * 109.47339 * 180.02562 * 12 2 1 37 37 H 1.09000 * 109.47044 * 59.99984 * 12 2 1 38 38 H 0.96999 * 120.00120 * 359.97438 * 13 12 2 39 39 H 1.08996 * 110.79338 * 260.61194 * 18 16 14 40 40 H 1.08998 * 110.79481 * 23.89353 * 18 16 14 41 41 H 1.07996 * 120.05168 * 0.02562 * 21 20 19 42 42 H 1.08003 * 119.91265 * 179.97438 * 22 21 20 43 43 H 1.07999 * 119.85992 * 179.97438 * 23 22 21 44 44 H 1.08001 * 120.08882 * 180.27076 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6925 -1.5595 -1.1320 6 6 1.6492 -0.2765 -2.4818 7 7 0.9351 0.8208 -2.6071 8 14 2.1442 -1.2471 -3.9990 9 1 1.1620 -2.3362 -4.2322 10 1 2.1709 -0.3440 -5.1775 11 1 3.4933 -1.8328 -3.7937 12 6 2.0400 -0.7212 1.2493 13 7 1.5515 -0.0306 2.4454 14 6 1.8775 -0.4908 3.6696 15 8 2.5748 -1.4767 3.7809 16 6 1.3755 0.2200 4.9000 17 1 1.6160 1.2824 4.8598 18 6 -0.1455 0.0030 5.0841 19 6 -0.2800 -0.1270 6.5895 20 6 -1.5376 -0.0313 7.3570 21 6 -1.5232 -0.1696 8.7465 22 6 -2.7011 -0.0799 9.4587 23 6 -3.8965 0.1461 8.8001 24 6 -3.9193 0.2848 7.4217 25 9 -5.0902 0.5059 6.7853 26 6 -2.7450 0.2026 6.6974 27 7 0.8939 -0.3360 7.0841 28 8 1.9054 -0.3843 6.0973 29 1 -0.3634 0.4169 0.9393 30 1 -0.3634 0.6050 -0.8308 31 1 -0.3633 -1.0219 -0.1086 32 1 3.1299 1.4425 0.0005 33 1 1.6766 1.9563 -0.8901 34 1 1.6765 1.9563 0.8900 35 1 0.6653 1.1259 -3.4875 36 1 3.1300 -0.7208 1.2495 37 1 1.6766 -1.7489 1.2493 38 1 0.9941 0.7582 2.3564 39 1 -0.7061 0.8632 4.7184 40 1 -0.4696 -0.9094 4.5835 41 1 -0.5912 -0.3465 9.2627 42 1 -2.6902 -0.1872 10.5333 43 1 -4.8157 0.2150 9.3627 44 1 -2.7623 0.3151 5.6234 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837890510.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:34 Heat of formation + Delta-G solvation = -37.863925 kcal Electronic energy + Delta-G solvation = -27845.719971 eV Core-core repulsion = 23679.589940 eV Total energy + Delta-G solvation = -4166.130031 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.31937 -40.87936 -39.45908 -38.63705 -36.42445 -34.02595 -33.46775 -31.73325 -31.26557 -30.55001 -30.35269 -26.11507 -25.81904 -25.32252 -24.31768 -24.02529 -22.78957 -20.69091 -20.27339 -18.93522 -17.98423 -17.71380 -16.82991 -16.70458 -16.42977 -16.03764 -15.96538 -15.54548 -15.33955 -14.87552 -14.76388 -14.45747 -14.12140 -13.72609 -13.60384 -13.47907 -13.18878 -12.98665 -12.81619 -12.58865 -12.36322 -12.28041 -12.04017 -11.79544 -11.49130 -11.25880 -11.07229 -10.91747 -10.74783 -10.47744 -10.46149 -10.26251 -9.71794 -9.68240 -9.42567 -9.33164 -9.00021 -8.87081 -8.59814 -8.40686 -6.08694 -4.17620 0.10215 0.65755 1.73017 2.42984 2.75353 3.12939 3.25616 3.31164 3.32464 3.37175 3.64165 3.76826 4.08391 4.20437 4.35580 4.36517 4.43282 4.57689 4.59782 4.77551 4.89388 4.98365 5.15068 5.18847 5.28088 5.37751 5.51515 5.58374 5.75631 5.81378 6.10463 6.22151 6.28450 6.40772 6.64878 6.71255 6.81019 6.86253 6.92549 6.97997 7.26135 7.47340 7.63456 7.83285 7.91541 8.05580 8.29917 8.46144 8.82546 9.48282 10.93432 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.016570 B = 0.002372 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.359165 B =11802.726448 C =13049.680033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.056 3.944 3 C -0.132 4.132 4 C -0.509 4.509 5 H 0.058 0.942 6 C 0.068 3.932 7 N -0.885 5.885 8 Si 0.893 3.107 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.132 3.868 13 N -0.709 5.709 14 C 0.510 3.490 15 O -0.524 6.524 16 C 0.025 3.975 17 H 0.113 0.887 18 C -0.140 4.140 19 C 0.120 3.880 20 C -0.008 4.008 21 C -0.091 4.091 22 C -0.092 4.092 23 C -0.136 4.136 24 C 0.100 3.900 25 F -0.134 7.134 26 C -0.123 4.123 27 N -0.274 5.274 28 O -0.158 6.158 29 H 0.006 0.994 30 H 0.082 0.918 31 H 0.030 0.970 32 H 0.028 0.972 33 H 0.087 0.913 34 H 0.005 0.995 35 H 0.260 0.740 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.399 0.601 39 H 0.115 0.885 40 H 0.113 0.887 41 H 0.141 0.859 42 H 0.141 0.859 43 H 0.140 0.860 44 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.923 3.307 21.270 24.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.056 3.944 3 C -0.189 4.189 4 C -0.547 4.547 5 H 0.076 0.924 6 C -0.134 4.134 7 N -0.523 5.523 8 Si 0.721 3.279 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.010 3.990 13 N -0.361 5.361 14 C 0.292 3.708 15 O -0.400 6.400 16 C -0.037 4.037 17 H 0.131 0.869 18 C -0.179 4.179 19 C -0.070 4.070 20 C -0.009 4.009 21 C -0.111 4.111 22 C -0.110 4.110 23 C -0.156 4.156 24 C 0.081 3.919 25 F -0.113 7.113 26 C -0.143 4.143 27 N -0.012 5.012 28 O -0.178 6.178 29 H 0.025 0.975 30 H 0.101 0.899 31 H 0.049 0.951 32 H 0.047 0.953 33 H 0.105 0.895 34 H 0.024 0.976 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.234 0.766 39 H 0.133 0.867 40 H 0.131 0.869 41 H 0.159 0.841 42 H 0.159 0.841 43 H 0.158 0.842 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -9.664 2.442 22.051 24.200 hybrid contribution -0.634 0.145 -1.911 2.019 sum -10.298 2.587 20.140 22.768 Atomic orbital electron populations 1.21818 0.97679 1.00249 0.98957 1.18363 0.92803 0.92785 0.90472 1.21869 0.98742 0.98258 1.00059 1.20947 1.29496 1.14424 0.89855 0.92375 1.24872 0.94926 0.94754 0.98837 1.69815 1.37768 1.21362 1.23392 0.86585 0.79085 0.79909 0.82302 1.20594 1.21301 1.19939 1.21809 0.98429 0.95885 0.82899 1.46249 1.52501 1.31874 1.05491 1.19839 0.81765 0.85120 0.84100 1.90740 1.37192 1.25699 1.86371 1.23626 0.92688 0.99495 0.87912 0.86898 1.22976 0.95584 1.06620 0.92725 1.24078 0.92535 0.96439 0.93922 1.17501 0.88701 1.02257 0.92454 1.21458 0.99560 0.97567 0.92504 1.21004 0.91046 0.98226 1.00708 1.21377 1.00174 1.01461 0.92598 1.17459 0.81354 1.02446 0.90686 1.91546 1.45441 1.92109 1.82166 1.21229 0.90368 1.01386 1.01359 1.78413 0.97640 1.11510 1.13640 1.91400 1.29066 1.79472 1.17839 0.97549 0.89899 0.95094 0.95328 0.89473 0.97616 0.92943 0.92367 0.92387 0.76559 0.86655 0.86871 0.84110 0.84136 0.84187 0.83647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.73 8.03 37.16 0.30 -2.44 16 2 C 0.06 1.25 0.50 -155.67 -0.08 1.17 16 3 C -0.13 -2.83 8.11 37.15 0.30 -2.53 16 4 C -0.51 -12.94 8.01 -34.44 -0.28 -13.22 16 5 H 0.06 1.50 7.75 -52.49 -0.41 1.10 16 6 C 0.07 1.74 5.13 -17.82 -0.09 1.65 16 7 N -0.89 -22.97 9.45 55.43 0.52 -22.45 16 8 Si 0.89 20.37 29.54 -169.99 -5.02 15.35 16 9 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 12 C 0.13 2.66 4.50 -4.04 -0.02 2.65 16 13 N -0.71 -11.63 4.90 -60.29 -0.30 -11.92 16 14 C 0.51 8.59 7.13 -10.98 -0.08 8.51 16 15 O -0.52 -11.25 16.59 -13.28 -0.22 -11.47 16 16 C 0.03 0.33 4.23 -26.97 -0.11 0.22 16 17 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 18 C -0.14 -1.40 5.81 -26.48 -0.15 -1.56 16 19 C 0.12 1.28 7.16 -79.42 -0.57 0.71 16 20 C -0.01 -0.07 5.87 -105.04 -0.62 -0.68 16 21 C -0.09 -0.68 9.68 -39.17 -0.38 -1.06 16 22 C -0.09 -0.51 10.03 -39.65 -0.40 -0.91 16 23 C -0.14 -0.82 10.02 -39.43 -0.39 -1.21 16 24 C 0.10 0.77 7.29 -39.48 -0.29 0.48 16 25 F -0.13 -1.18 17.26 2.25 0.04 -1.14 16 26 C -0.12 -0.95 9.59 -39.10 -0.37 -1.32 16 27 N -0.27 -3.70 12.12 35.30 0.43 -3.27 16 28 O -0.16 -2.53 11.82 -30.21 -0.36 -2.89 16 29 H 0.01 0.10 6.71 -51.93 -0.35 -0.25 16 30 H 0.08 1.95 6.25 -51.93 -0.32 1.62 16 31 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.09 2.09 6.10 -51.93 -0.32 1.77 16 34 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 35 H 0.26 6.56 8.31 -40.82 -0.34 6.22 16 36 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.40 5.62 6.16 -40.82 -0.25 5.37 16 39 H 0.12 0.78 7.95 -51.93 -0.41 0.36 16 40 H 0.11 1.18 7.90 -51.93 -0.41 0.77 16 41 H 0.14 1.02 7.84 -52.49 -0.41 0.60 16 42 H 0.14 0.41 8.06 -52.48 -0.42 -0.01 16 43 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 44 H 0.15 0.93 7.36 -52.49 -0.39 0.54 16 LS Contribution 370.13 15.07 5.58 5.58 Total: -1.00 -30.68 370.13 -8.28 -38.96 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -5.72 Total: 2.79 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: -3.23 Total: -9.53 kcal Atomic # 7 Polarization: -38.30 SS G_CDS: 0.66 Total: -37.64 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: -0.58 Total: -14.36 kcal Atomic # 9 Polarization: -1.18 SS G_CDS: 0.04 Total: -1.14 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.68 -8.28 -38.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837890510.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.092 kcal (2) G-P(sol) polarization free energy of solvation -30.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds