Wall clock time and date at job start Tue Mar 31 2020 18:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47041 * 2 1 4 4 C 1.50694 * 109.47362 * 239.99798 * 2 1 3 5 5 H 1.07997 * 120.00412 * 237.00929 * 4 2 1 6 6 C 1.37880 * 120.00093 * 57.00785 * 4 2 1 7 7 N 1.31517 * 119.99921 * 5.54257 * 6 4 2 8 8 Si 1.86797 * 120.00212 * 185.54188 * 6 4 2 9 9 H 1.48504 * 109.46997 * 84.99765 * 8 6 4 10 10 H 1.48496 * 109.47339 * 204.99930 * 8 6 4 11 11 H 1.48498 * 109.47248 * 324.99919 * 8 6 4 12 12 C 1.53000 * 109.47064 * 119.99787 * 2 1 3 13 13 N 1.46504 * 109.47049 * 300.00601 * 12 2 1 14 14 C 1.34780 * 119.99786 * 180.02562 * 13 12 2 15 15 O 1.21274 * 120.00075 * 359.97438 * 14 13 12 16 16 C 1.50704 * 119.99739 * 179.97438 * 14 13 12 17 17 H 1.09001 * 110.85833 * 307.34272 * 16 14 13 18 18 C 1.54733 * 111.00485 * 71.16522 * 16 14 13 19 19 C 1.51689 * 102.54862 * 142.35020 * 18 16 14 20 20 C 1.47649 * 125.86526 * 164.62943 * 19 18 16 21 21 C 1.39639 * 120.13509 * 180.02562 * 20 19 18 22 22 C 1.37942 * 119.89959 * 180.02562 * 21 20 19 23 23 C 1.38342 * 120.17593 * 0.02562 * 22 21 20 24 24 C 1.38550 * 120.27840 * 359.95630 * 23 22 21 25 25 F 1.35095 * 119.95303 * 180.02562 * 24 23 22 26 26 C 1.38211 * 120.09501 * 359.76957 * 24 23 22 27 27 N 1.29086 * 108.26752 * 344.60881 * 19 18 16 28 28 O 1.41388 * 112.87176 * 359.67875 * 27 19 18 29 29 H 1.08999 * 109.47337 * 293.93360 * 1 2 3 30 30 H 1.09006 * 109.47275 * 53.93747 * 1 2 3 31 31 H 1.09002 * 109.47105 * 173.93405 * 1 2 3 32 32 H 1.09000 * 109.47106 * 179.97438 * 3 2 1 33 33 H 1.09007 * 109.47240 * 299.99745 * 3 2 1 34 34 H 1.09006 * 109.47285 * 59.99527 * 3 2 1 35 35 H 0.96997 * 119.99816 * 180.02562 * 7 6 4 36 36 H 1.09000 * 109.47339 * 180.02562 * 12 2 1 37 37 H 1.09000 * 109.47044 * 59.99984 * 12 2 1 38 38 H 0.96999 * 120.00120 * 359.97438 * 13 12 2 39 39 H 1.08996 * 110.79338 * 260.61194 * 18 16 14 40 40 H 1.08998 * 110.79481 * 23.89353 * 18 16 14 41 41 H 1.07996 * 120.05168 * 0.02562 * 21 20 19 42 42 H 1.08003 * 119.91265 * 179.97438 * 22 21 20 43 43 H 1.07999 * 119.85992 * 179.97438 * 23 22 21 44 44 H 1.08001 * 120.08882 * 180.27076 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6925 -1.5595 -1.1320 6 6 1.6492 -0.2765 -2.4818 7 7 0.9351 0.8208 -2.6071 8 14 2.1442 -1.2471 -3.9990 9 1 1.1620 -2.3362 -4.2322 10 1 2.1709 -0.3440 -5.1775 11 1 3.4933 -1.8328 -3.7937 12 6 2.0400 -0.7212 1.2493 13 7 1.5515 -0.0306 2.4454 14 6 1.8775 -0.4908 3.6696 15 8 2.5748 -1.4767 3.7809 16 6 1.3755 0.2200 4.9000 17 1 1.6160 1.2824 4.8598 18 6 -0.1455 0.0030 5.0841 19 6 -0.2800 -0.1270 6.5895 20 6 -1.5376 -0.0313 7.3570 21 6 -1.5232 -0.1696 8.7465 22 6 -2.7011 -0.0799 9.4587 23 6 -3.8965 0.1461 8.8001 24 6 -3.9193 0.2848 7.4217 25 9 -5.0902 0.5059 6.7853 26 6 -2.7450 0.2026 6.6974 27 7 0.8939 -0.3360 7.0841 28 8 1.9054 -0.3843 6.0973 29 1 -0.3634 0.4169 0.9393 30 1 -0.3634 0.6050 -0.8308 31 1 -0.3633 -1.0219 -0.1086 32 1 3.1299 1.4425 0.0005 33 1 1.6766 1.9563 -0.8901 34 1 1.6765 1.9563 0.8900 35 1 0.6653 1.1259 -3.4875 36 1 3.1300 -0.7208 1.2495 37 1 1.6766 -1.7489 1.2493 38 1 0.9941 0.7582 2.3564 39 1 -0.7061 0.8632 4.7184 40 1 -0.4696 -0.9094 4.5835 41 1 -0.5912 -0.3465 9.2627 42 1 -2.6902 -0.1872 10.5333 43 1 -4.8157 0.2150 9.3627 44 1 -2.7623 0.3151 5.6234 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837890510.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:33 Heat of formation + Delta-G solvation = -54.923823 kcal Electronic energy + Delta-G solvation = -27846.459744 eV Core-core repulsion = 23679.589940 eV Total energy + Delta-G solvation = -4166.869804 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -49.90864 -41.88916 -40.43659 -39.59843 -38.10478 -35.16883 -34.79720 -33.11869 -32.13538 -31.60404 -31.06040 -27.62490 -27.55136 -27.09406 -25.27600 -24.89934 -23.41452 -21.81500 -21.22786 -20.63459 -18.99464 -18.72617 -17.80797 -17.46074 -17.31966 -17.21884 -16.78404 -16.64860 -16.61005 -16.32814 -16.07331 -15.54008 -14.97834 -14.82909 -14.67591 -14.48688 -14.34951 -14.18911 -14.06301 -13.98148 -13.36138 -13.25461 -13.07756 -12.93179 -12.87800 -12.68935 -12.61634 -12.36760 -12.23837 -12.15032 -11.86095 -11.48537 -11.47092 -11.24392 -10.80174 -10.68407 -10.39797 -10.07155 -9.96705 -9.67839 -8.03898 -6.17682 -0.52711 0.14014 1.02346 1.31072 1.42144 1.45325 1.50840 1.54278 2.24811 2.46846 2.58516 2.78300 3.06213 3.20563 3.25387 3.40281 3.59811 3.81942 3.87774 3.94429 4.05924 4.27910 4.29883 4.39626 4.45878 4.49474 4.50427 4.71517 4.80908 4.97569 4.98962 5.04724 5.06052 5.09536 5.19581 5.21695 5.29208 5.30946 5.53353 5.67932 5.69241 5.78211 6.07539 6.15922 6.21038 6.42761 6.50681 6.85867 7.12929 7.49661 8.95426 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.016570 B = 0.002372 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.359165 B =11802.726448 C =13049.680033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.052 3.948 3 C -0.123 4.123 4 C -0.531 4.531 5 H 0.043 0.957 6 C 0.031 3.969 7 N -0.897 5.897 8 Si 0.941 3.059 9 H -0.278 1.278 10 H -0.283 1.283 11 H -0.278 1.278 12 C 0.147 3.853 13 N -0.695 5.695 14 C 0.512 3.488 15 O -0.576 6.576 16 C 0.029 3.971 17 H 0.144 0.856 18 C -0.137 4.137 19 C 0.143 3.857 20 C -0.029 4.029 21 C -0.094 4.094 22 C -0.086 4.086 23 C -0.125 4.125 24 C 0.082 3.918 25 F -0.143 7.143 26 C -0.119 4.119 27 N -0.305 5.305 28 O -0.203 6.203 29 H 0.045 0.955 30 H 0.060 0.940 31 H 0.018 0.982 32 H 0.016 0.984 33 H 0.063 0.937 34 H 0.041 0.959 35 H 0.260 0.740 36 H 0.039 0.961 37 H 0.042 0.958 38 H 0.414 0.586 39 H 0.158 0.842 40 H 0.111 0.889 41 H 0.139 0.861 42 H 0.171 0.829 43 H 0.163 0.837 44 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.083 4.444 22.885 26.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.052 3.948 3 C -0.181 4.181 4 C -0.569 4.569 5 H 0.061 0.939 6 C -0.169 4.169 7 N -0.535 5.535 8 Si 0.768 3.232 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.203 1.203 12 C 0.023 3.977 13 N -0.348 5.348 14 C 0.296 3.704 15 O -0.456 6.456 16 C -0.033 4.033 17 H 0.162 0.838 18 C -0.176 4.176 19 C -0.046 4.046 20 C -0.030 4.030 21 C -0.114 4.114 22 C -0.103 4.103 23 C -0.145 4.145 24 C 0.063 3.937 25 F -0.122 7.122 26 C -0.140 4.140 27 N -0.047 5.047 28 O -0.220 6.220 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.037 0.963 32 H 0.035 0.965 33 H 0.082 0.918 34 H 0.060 0.940 35 H 0.070 0.930 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.253 0.747 39 H 0.176 0.824 40 H 0.129 0.871 41 H 0.157 0.843 42 H 0.188 0.812 43 H 0.181 0.819 44 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -11.831 3.610 23.654 26.692 hybrid contribution -0.073 -0.219 -2.320 2.331 sum -11.904 3.390 21.334 24.664 Atomic orbital electron populations 1.21661 0.96639 0.99354 1.00094 1.18355 0.93557 0.92977 0.89936 1.21718 0.97951 0.97782 1.00626 1.21250 1.29560 1.14438 0.91686 0.93912 1.25397 0.95213 0.95529 1.00750 1.69910 1.38090 1.21821 1.23670 0.85839 0.78469 0.78899 0.79979 1.20430 1.20897 1.20341 1.21351 0.97179 0.95299 0.83829 1.45970 1.52400 1.31989 1.04473 1.20507 0.80496 0.84327 0.85032 1.90716 1.39531 1.28174 1.87156 1.23684 0.94428 0.99954 0.85254 0.83834 1.23088 0.93767 1.08389 0.92385 1.24442 0.92474 0.93299 0.94402 1.17507 0.88033 1.04583 0.92909 1.21625 1.00396 0.97140 0.92283 1.21311 0.89987 0.96934 1.02101 1.21712 1.01293 0.99392 0.92090 1.17667 0.81066 1.03509 0.91476 1.91527 1.45859 1.92328 1.82450 1.21323 0.89969 1.00602 1.02069 1.78460 0.98232 1.15101 1.12906 1.91367 1.31103 1.80498 1.18997 0.93644 0.92124 0.96254 0.96462 0.91825 0.94014 0.93012 0.94300 0.93930 0.74745 0.82418 0.87079 0.84310 0.81177 0.81892 0.82452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.91 8.03 71.98 0.58 -4.33 16 2 C 0.05 2.30 0.50 -52.93 -0.03 2.27 16 3 C -0.12 -5.17 8.11 71.98 0.58 -4.58 16 4 C -0.53 -27.38 8.01 25.60 0.20 -27.17 16 5 H 0.04 2.27 7.75 -2.91 -0.02 2.25 16 6 C 0.03 1.61 5.13 84.65 0.43 2.05 16 7 N -0.90 -46.50 9.45 21.45 0.20 -46.29 16 8 Si 0.94 42.01 29.54 68.60 2.03 44.04 16 9 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 10 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 12 C 0.15 5.96 4.50 86.38 0.39 6.35 16 13 N -0.70 -21.80 4.90 -463.05 -2.27 -24.07 16 14 C 0.51 16.94 7.13 87.66 0.63 17.57 16 15 O -0.58 -25.33 16.59 15.00 0.25 -25.09 16 16 C 0.03 0.71 4.23 30.44 0.13 0.83 16 17 H 0.14 2.61 8.14 -2.39 -0.02 2.59 16 18 C -0.14 -2.40 5.81 30.75 0.18 -2.22 16 19 C 0.14 2.81 7.16 45.77 0.33 3.14 16 20 C -0.03 -0.44 5.87 -20.14 -0.12 -0.56 16 21 C -0.09 -1.20 9.68 22.54 0.22 -0.98 16 22 C -0.09 -0.67 10.03 22.22 0.22 -0.45 16 23 C -0.13 -1.09 10.02 22.37 0.22 -0.87 16 24 C 0.08 1.05 7.29 22.34 0.16 1.21 16 25 F -0.14 -2.21 17.26 44.97 0.78 -1.43 16 26 C -0.12 -1.52 9.59 22.58 0.22 -1.31 16 27 N -0.31 -8.09 12.12 -42.23 -0.51 -8.60 16 28 O -0.20 -6.52 11.82 -20.30 -0.24 -6.76 16 29 H 0.04 1.46 6.71 -2.39 -0.02 1.44 16 30 H 0.06 2.79 6.25 -2.38 -0.01 2.77 16 31 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.06 3.01 6.10 -2.38 -0.01 2.99 16 34 H 0.04 1.40 6.86 -2.38 -0.02 1.39 16 35 H 0.26 13.06 8.31 -92.71 -0.77 12.29 16 36 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.41 10.35 6.16 -92.71 -0.57 9.78 16 39 H 0.16 1.40 7.95 -2.39 -0.02 1.38 16 40 H 0.11 2.07 7.90 -2.39 -0.02 2.05 16 41 H 0.14 1.81 7.84 -2.91 -0.02 1.79 16 42 H 0.17 0.31 8.06 -2.91 -0.02 0.28 16 43 H 0.16 0.65 8.06 -2.91 -0.02 0.62 16 44 H 0.16 1.52 7.36 -2.91 -0.02 1.50 16 Total: -1.00 -69.24 370.13 5.05 -64.19 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: 0.47 Total: 13.07 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: 4.35 Total: -9.05 kcal Atomic # 7 Polarization: -76.39 SS G_CDS: -2.58 Total: -78.97 kcal Atomic # 8 Polarization: -31.86 SS G_CDS: 0.01 Total: -31.85 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.78 Total: -1.43 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Total: -69.24 5.05 -64.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837890510.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.268 kcal (2) G-P(sol) polarization free energy of solvation -69.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds