Wall clock time and date at job start Tue Mar 31 2020 17:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.32778 * 123.45609 * 2 1 4 4 S 1.75505 * 110.57249 * 179.87702 * 3 2 1 5 5 C 1.70448 * 92.44748 * 0.34622 * 4 3 2 6 6 C 1.36006 * 110.81537 * 359.81098 * 5 4 3 7 7 C 1.47195 * 123.45866 * 179.97438 * 6 5 4 8 8 O 1.21640 * 119.99777 * 205.15311 * 7 6 5 9 9 N 1.34766 * 119.99999 * 25.15738 * 7 6 5 10 10 C 1.48660 * 125.78530 * 5.10213 * 9 7 6 11 11 C 1.53324 * 103.31512 * 155.51667 * 10 9 7 12 12 H 1.09003 * 111.57547 * 284.31666 * 11 10 9 13 13 C 1.51625 * 116.56795 * 156.08612 * 11 10 9 14 14 C 1.53805 * 107.02138 * 183.94795 * 13 11 10 15 15 C 1.52524 * 111.70457 * 57.53057 * 14 13 11 16 16 C 1.53841 * 111.66694 * 305.95954 * 15 14 13 17 17 H 1.08999 * 109.94016 * 297.81461 * 16 15 14 18 18 N 1.46496 * 110.01333 * 176.61816 * 16 15 14 19 19 C 1.36934 * 120.00004 * 87.36203 * 18 16 15 20 20 H 1.07996 * 120.00192 * 0.02562 * 19 18 16 21 21 C 1.38812 * 119.99842 * 180.02562 * 19 18 16 22 22 N 1.31618 * 120.00303 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 120.00084 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46810 * 59.99758 * 23 21 19 25 25 H 1.48492 * 109.47335 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.46916 * 300.00207 * 23 21 19 27 27 C 1.51441 * 107.03793 * 57.19483 * 16 15 14 28 28 H 1.09006 * 109.87581 * 54.70628 * 27 16 15 29 29 C 1.48241 * 125.78246 * 185.40914 * 9 7 6 30 30 H 1.09001 * 109.46614 * 269.69779 * 1 2 3 31 31 H 1.08993 * 109.47163 * 149.70071 * 1 2 3 32 32 H 1.08997 * 109.47620 * 29.69005 * 1 2 3 33 33 H 1.07999 * 124.71278 * 0.02562 * 3 2 1 34 34 H 1.07998 * 124.59186 * 179.81892 * 5 4 3 35 35 H 1.08993 * 110.62877 * 274.10937 * 10 9 7 36 36 H 1.08998 * 110.62624 * 37.13015 * 10 9 7 37 37 H 1.09000 * 109.94452 * 64.56599 * 13 11 10 38 38 H 1.09005 * 109.93780 * 303.32627 * 13 11 10 39 39 H 1.09001 * 109.03814 * 296.95848 * 14 13 11 40 40 H 1.09000 * 109.03668 * 178.10338 * 14 13 11 41 41 H 1.09004 * 109.04274 * 185.39572 * 15 14 13 42 42 H 1.09003 * 108.98260 * 66.48758 * 15 14 13 43 43 H 0.97002 * 120.00236 * 267.36548 * 18 16 15 44 44 H 0.96997 * 120.00018 * 179.97438 * 22 21 19 45 45 H 1.09000 * 110.17409 * 295.92202 * 29 9 7 46 46 H 1.09007 * 110.17192 * 57.65315 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2390 1.1078 0.0000 4 16 3.9498 0.7165 0.0035 5 6 3.6411 -0.9598 -0.0053 6 6 2.3033 -1.2049 -0.0065 7 6 1.7263 -2.5590 -0.0142 8 8 0.6106 -2.7421 -0.4628 9 7 2.4341 -3.5958 0.4759 10 6 3.7567 -3.5049 1.1486 11 6 3.7969 -4.7655 2.0204 12 1 3.1691 -4.6610 2.9054 13 6 5.1702 -5.2830 2.4015 14 6 4.9579 -6.5926 3.1797 15 6 4.1789 -7.6160 2.3597 16 6 2.8500 -7.0376 1.8438 17 1 2.2110 -6.7671 2.6845 18 7 2.1707 -8.0209 0.9965 19 6 1.3362 -8.9494 1.5592 20 1 1.1786 -8.9567 2.6276 21 6 0.6930 -9.8814 0.7564 22 7 0.8847 -9.8722 -0.5457 23 14 -0.4459 -11.1477 1.5239 24 1 -1.5545 -10.4542 2.2276 25 1 -1.0045 -12.0203 0.4601 26 1 0.3157 -11.9747 2.4941 27 6 3.1878 -5.8035 1.0338 28 1 3.9093 -6.0562 0.2568 29 6 2.0287 -5.0210 0.4298 30 1 -0.3632 -0.0054 1.0277 31 1 -0.3633 -0.8872 -0.5184 32 1 -0.3634 0.8927 -0.5090 33 1 1.8374 2.1103 0.0004 34 1 4.4044 -1.7238 -0.0093 35 1 4.5624 -3.5165 0.4147 36 1 3.8121 -2.6090 1.7670 37 1 5.6803 -4.5545 3.0317 38 1 5.7574 -5.4751 1.5035 39 1 4.4069 -6.3769 4.0951 40 1 5.9293 -7.0120 3.4416 41 1 3.9703 -8.4860 2.9824 42 1 4.7863 -7.9252 1.5091 43 1 2.3119 -8.0142 0.0369 44 1 0.4355 -10.5237 -1.1067 45 1 1.1245 -5.1738 1.0190 46 1 1.8616 -5.3311 -0.6018 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992645799.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:26 Heat of formation + Delta-G solvation = 5.681922 kcal Electronic energy + Delta-G solvation = -26967.538160 eV Core-core repulsion = 23369.509595 eV Total energy + Delta-G solvation = -3598.028565 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.57930 -39.04733 -37.09334 -35.58880 -33.99832 -31.91112 -31.41863 -30.14480 -28.94205 -27.77700 -26.74128 -25.39863 -23.84225 -22.94773 -21.21051 -20.43020 -20.26721 -19.65454 -18.55882 -17.68530 -17.17989 -16.55734 -15.95003 -15.26385 -14.96314 -14.60731 -14.23568 -14.18568 -13.99154 -13.69450 -13.57151 -13.40638 -13.06618 -12.86624 -12.74729 -12.51284 -12.40175 -12.21139 -12.03230 -11.97683 -11.78607 -11.41237 -11.10044 -10.99867 -10.89115 -10.80867 -10.53344 -10.27730 -10.22620 -10.16906 -9.79889 -9.71454 -9.46779 -9.09321 -8.87937 -8.62932 -8.43351 -6.96465 -5.75580 -3.04804 0.61305 1.34050 1.69486 1.87771 2.96896 3.29531 3.45088 3.49861 3.50610 4.35110 4.44582 4.58870 4.61125 4.80722 4.89785 4.99536 5.13855 5.22604 5.30235 5.34555 5.38572 5.47319 5.52550 5.55778 5.59368 5.63050 5.69458 5.79617 5.82756 5.84835 5.92533 6.04204 6.06122 6.08536 6.13807 6.24627 6.38372 6.40025 6.42992 6.51778 6.58009 6.62431 6.85546 7.07064 7.59373 7.70499 8.25411 8.42386 9.53889 10.10040 10.44650 11.46762 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.015567 B = 0.003064 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.220736 B = 9135.876884 C =10523.333245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.051 4.051 3 C -0.244 4.244 4 S 0.168 5.832 5 C -0.214 4.214 6 C -0.143 4.143 7 C 0.588 3.412 8 O -0.531 6.531 9 N -0.615 5.615 10 C 0.107 3.893 11 C -0.107 4.107 12 H 0.087 0.913 13 C -0.101 4.101 14 C -0.115 4.115 15 C -0.138 4.138 16 C 0.196 3.804 17 H 0.051 0.949 18 N -0.722 5.722 19 C -0.241 4.241 20 H 0.069 0.931 21 C -0.011 4.011 22 N -0.932 5.932 23 Si 0.905 3.095 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.287 1.287 27 C -0.103 4.103 28 H 0.078 0.922 29 C 0.127 3.873 30 H 0.070 0.930 31 H 0.096 0.904 32 H 0.065 0.935 33 H 0.167 0.833 34 H 0.175 0.825 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.060 0.940 38 H 0.065 0.935 39 H 0.056 0.944 40 H 0.054 0.946 41 H 0.061 0.939 42 H 0.054 0.946 43 H 0.384 0.616 44 H 0.256 0.744 45 H 0.076 0.924 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.535 22.236 4.045 24.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.062 4.062 3 C -0.379 4.379 4 S 0.435 5.565 5 C -0.352 4.352 6 C -0.161 4.161 7 C 0.375 3.625 8 O -0.409 6.409 9 N -0.348 5.348 10 C -0.016 4.016 11 C -0.126 4.126 12 H 0.106 0.894 13 C -0.139 4.139 14 C -0.153 4.153 15 C -0.179 4.179 16 C 0.085 3.915 17 H 0.069 0.931 18 N -0.362 5.362 19 C -0.372 4.372 20 H 0.087 0.913 21 C -0.207 4.207 22 N -0.580 5.580 23 Si 0.736 3.264 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 C -0.123 4.123 28 H 0.096 0.904 29 C 0.006 3.994 30 H 0.088 0.912 31 H 0.115 0.885 32 H 0.084 0.916 33 H 0.185 0.815 34 H 0.193 0.807 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.073 0.927 43 H 0.218 0.782 44 H 0.066 0.934 45 H 0.094 0.906 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 11.086 22.947 3.856 25.775 hybrid contribution -1.654 -1.741 0.036 2.401 sum 9.432 21.206 3.891 23.533 Atomic orbital electron populations 1.20714 0.88769 1.04320 1.02850 1.19875 0.97532 0.89859 0.98947 1.25270 0.96277 1.02513 1.13846 1.82953 1.05889 0.97240 1.70398 1.25961 0.99962 1.02535 1.06748 1.20183 0.92199 0.94296 1.09395 1.17232 0.84455 0.82734 0.78055 1.90766 1.18615 1.84391 1.47121 1.49084 1.20560 1.07421 1.57781 1.22334 0.85073 0.99066 0.95134 1.22169 0.98461 0.93710 0.98281 0.89446 1.21322 0.95089 0.97070 1.00377 1.21538 0.99871 0.95135 0.98739 1.22328 0.98020 0.98095 0.99443 1.19938 0.91747 0.87043 0.92740 0.93071 1.42385 1.52632 1.35047 1.06099 1.19167 1.18553 1.07267 0.92192 0.91274 1.24726 1.00816 0.99733 0.95427 1.69641 1.47065 1.38371 1.02879 0.86304 0.80843 0.81407 0.77839 1.21250 1.21732 1.21337 1.22185 0.96836 0.95731 0.97551 0.90366 1.21635 0.98308 0.77366 1.02087 0.91177 0.88508 0.91642 0.81538 0.80734 0.91226 0.90448 0.92094 0.91634 0.92554 0.92688 0.91980 0.92732 0.78211 0.93449 0.90578 0.90774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.22 9.86 36.00 0.36 -0.86 16 2 C -0.05 -0.60 6.00 -104.06 -0.62 -1.22 16 3 C -0.24 -2.23 10.91 28.86 0.31 -1.91 16 4 S 0.17 1.34 23.02 -107.50 -2.48 -1.14 16 5 C -0.21 -2.14 9.01 29.93 0.27 -1.87 16 6 C -0.14 -1.84 5.73 -104.63 -0.60 -2.44 16 7 C 0.59 9.44 7.65 -12.63 -0.10 9.34 16 8 O -0.53 -10.36 14.90 5.24 0.08 -10.29 16 9 N -0.61 -9.06 3.38 -172.05 -0.58 -9.64 16 10 C 0.11 1.17 4.71 -2.68 -0.01 1.15 16 11 C -0.11 -1.27 2.51 -89.76 -0.23 -1.50 16 12 H 0.09 1.10 8.01 -51.93 -0.42 0.68 16 13 C -0.10 -1.05 5.71 -27.01 -0.15 -1.20 16 14 C -0.11 -1.41 5.83 -26.56 -0.15 -1.56 16 15 C -0.14 -2.26 5.47 -26.54 -0.15 -2.41 16 16 C 0.20 3.63 2.52 -68.28 -0.17 3.46 16 17 H 0.05 1.00 7.97 -51.93 -0.41 0.58 16 18 N -0.72 -17.37 5.05 -53.77 -0.27 -17.64 16 19 C -0.24 -6.54 9.95 -15.06 -0.15 -6.69 16 20 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 21 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 22 N -0.93 -28.00 13.06 55.49 0.72 -27.28 16 23 Si 0.91 22.41 29.55 -169.99 -5.02 17.39 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 27 C -0.10 -1.59 1.81 -90.36 -0.16 -1.75 16 28 H 0.08 1.22 7.95 -51.93 -0.41 0.80 16 29 C 0.13 2.17 6.52 -3.42 -0.02 2.15 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.10 1.36 5.84 -51.93 -0.30 1.06 16 32 H 0.06 0.59 8.13 -51.93 -0.42 0.16 16 33 H 0.17 1.11 8.06 -52.49 -0.42 0.69 16 34 H 0.18 1.47 5.39 -52.49 -0.28 1.19 16 35 H 0.07 0.66 7.15 -51.93 -0.37 0.28 16 36 H 0.08 0.74 6.92 -51.93 -0.36 0.38 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.67 8.00 -51.93 -0.42 0.25 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 42 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.38 9.94 7.81 -40.82 -0.32 9.62 16 44 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 45 H 0.08 1.47 8.08 -51.93 -0.42 1.05 16 46 H 0.07 1.40 8.14 -51.92 -0.42 0.98 16 LS Contribution 372.42 15.07 5.61 5.61 Total: -1.00 -31.70 372.42 -10.68 -42.38 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -7.06 Total: 8.31 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: -1.68 Total: -7.71 kcal Atomic # 7 Polarization: -54.43 SS G_CDS: -0.13 Total: -54.56 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.08 Total: -10.29 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Atomic # 16 Polarization: 1.34 SS G_CDS: -2.48 Total: -1.14 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.70 -10.68 -42.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992645799.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.062 kcal (2) G-P(sol) polarization free energy of solvation -31.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds