Wall clock time and date at job start Tue Mar 31 2020 17:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.32778 * 123.45609 * 2 1 4 4 S 1.75505 * 110.57249 * 179.87702 * 3 2 1 5 5 C 1.70448 * 92.44748 * 0.34622 * 4 3 2 6 6 C 1.36006 * 110.81537 * 359.81098 * 5 4 3 7 7 C 1.47195 * 123.45866 * 179.97438 * 6 5 4 8 8 O 1.21640 * 119.99777 * 205.15311 * 7 6 5 9 9 N 1.34766 * 119.99999 * 25.15738 * 7 6 5 10 10 C 1.48660 * 125.78530 * 5.10213 * 9 7 6 11 11 C 1.53324 * 103.31512 * 155.51667 * 10 9 7 12 12 H 1.09003 * 111.57547 * 284.31666 * 11 10 9 13 13 C 1.51625 * 116.56795 * 156.08612 * 11 10 9 14 14 C 1.53805 * 107.02138 * 183.94795 * 13 11 10 15 15 C 1.52524 * 111.70457 * 57.53057 * 14 13 11 16 16 C 1.53841 * 111.66694 * 305.95954 * 15 14 13 17 17 H 1.08999 * 109.94016 * 297.81461 * 16 15 14 18 18 N 1.46496 * 110.01333 * 176.61816 * 16 15 14 19 19 C 1.36934 * 120.00004 * 87.36203 * 18 16 15 20 20 H 1.07996 * 120.00192 * 0.02562 * 19 18 16 21 21 C 1.38812 * 119.99842 * 180.02562 * 19 18 16 22 22 N 1.31618 * 120.00303 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 120.00084 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46810 * 59.99758 * 23 21 19 25 25 H 1.48492 * 109.47335 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.46916 * 300.00207 * 23 21 19 27 27 C 1.51441 * 107.03793 * 57.19483 * 16 15 14 28 28 H 1.09006 * 109.87581 * 54.70628 * 27 16 15 29 29 C 1.48241 * 125.78246 * 185.40914 * 9 7 6 30 30 H 1.09001 * 109.46614 * 269.69779 * 1 2 3 31 31 H 1.08993 * 109.47163 * 149.70071 * 1 2 3 32 32 H 1.08997 * 109.47620 * 29.69005 * 1 2 3 33 33 H 1.07999 * 124.71278 * 0.02562 * 3 2 1 34 34 H 1.07998 * 124.59186 * 179.81892 * 5 4 3 35 35 H 1.08993 * 110.62877 * 274.10937 * 10 9 7 36 36 H 1.08998 * 110.62624 * 37.13015 * 10 9 7 37 37 H 1.09000 * 109.94452 * 64.56599 * 13 11 10 38 38 H 1.09005 * 109.93780 * 303.32627 * 13 11 10 39 39 H 1.09001 * 109.03814 * 296.95848 * 14 13 11 40 40 H 1.09000 * 109.03668 * 178.10338 * 14 13 11 41 41 H 1.09004 * 109.04274 * 185.39572 * 15 14 13 42 42 H 1.09003 * 108.98260 * 66.48758 * 15 14 13 43 43 H 0.97002 * 120.00236 * 267.36548 * 18 16 15 44 44 H 0.96997 * 120.00018 * 179.97438 * 22 21 19 45 45 H 1.09000 * 110.17409 * 295.92202 * 29 9 7 46 46 H 1.09007 * 110.17192 * 57.65315 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2390 1.1078 0.0000 4 16 3.9498 0.7165 0.0035 5 6 3.6411 -0.9598 -0.0053 6 6 2.3033 -1.2049 -0.0065 7 6 1.7263 -2.5590 -0.0142 8 8 0.6106 -2.7421 -0.4628 9 7 2.4341 -3.5958 0.4759 10 6 3.7567 -3.5049 1.1486 11 6 3.7969 -4.7655 2.0204 12 1 3.1691 -4.6610 2.9054 13 6 5.1702 -5.2830 2.4015 14 6 4.9579 -6.5926 3.1797 15 6 4.1789 -7.6160 2.3597 16 6 2.8500 -7.0376 1.8438 17 1 2.2110 -6.7671 2.6845 18 7 2.1707 -8.0209 0.9965 19 6 1.3362 -8.9494 1.5592 20 1 1.1786 -8.9567 2.6276 21 6 0.6930 -9.8814 0.7564 22 7 0.8847 -9.8722 -0.5457 23 14 -0.4459 -11.1477 1.5239 24 1 -1.5545 -10.4542 2.2276 25 1 -1.0045 -12.0203 0.4601 26 1 0.3157 -11.9747 2.4941 27 6 3.1878 -5.8035 1.0338 28 1 3.9093 -6.0562 0.2568 29 6 2.0287 -5.0210 0.4298 30 1 -0.3632 -0.0054 1.0277 31 1 -0.3633 -0.8872 -0.5184 32 1 -0.3634 0.8927 -0.5090 33 1 1.8374 2.1103 0.0004 34 1 4.4044 -1.7238 -0.0093 35 1 4.5624 -3.5165 0.4147 36 1 3.8121 -2.6090 1.7670 37 1 5.6803 -4.5545 3.0317 38 1 5.7574 -5.4751 1.5035 39 1 4.4069 -6.3769 4.0951 40 1 5.9293 -7.0120 3.4416 41 1 3.9703 -8.4860 2.9824 42 1 4.7863 -7.9252 1.5091 43 1 2.3119 -8.0142 0.0369 44 1 0.4355 -10.5237 -1.1067 45 1 1.1245 -5.1738 1.0190 46 1 1.8616 -5.3311 -0.6018 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992645799.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:25 Heat of formation + Delta-G solvation = -13.728647 kcal Electronic energy + Delta-G solvation = -26968.379866 eV Core-core repulsion = 23369.509595 eV Total energy + Delta-G solvation = -3598.870271 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.74440 -40.17956 -38.07149 -36.99926 -35.61798 -33.33871 -32.74318 -31.23109 -30.48280 -28.71025 -27.94371 -26.59724 -25.50526 -24.17232 -22.32443 -21.62277 -21.35605 -20.97792 -19.53902 -19.12597 -18.45305 -17.69586 -17.14418 -16.75008 -16.31312 -15.83277 -15.61463 -15.52088 -15.19434 -14.79076 -14.71384 -14.61558 -14.31083 -14.00163 -13.92946 -13.57598 -13.50916 -13.38176 -13.20710 -12.97719 -12.83257 -12.81719 -12.78718 -12.50724 -12.25548 -12.04269 -11.89156 -11.84441 -11.74380 -11.50370 -11.28082 -10.94010 -10.86763 -10.83635 -9.88864 -9.77542 -9.20184 -8.99790 -7.94417 -5.22201 -0.18363 0.65295 0.92902 1.00029 1.44232 1.47338 1.53022 1.83246 2.19656 2.54881 3.26273 3.38211 3.55978 3.66792 3.74408 3.85847 4.08047 4.17593 4.22185 4.25037 4.34392 4.42344 4.47882 4.50478 4.60490 4.63170 4.63876 4.68777 4.70724 4.73367 4.77207 4.83967 4.86165 4.96680 5.09641 5.15649 5.27155 5.30130 5.31893 5.37149 5.42252 5.50805 5.51909 5.53258 5.69512 6.27634 6.45167 7.06446 7.33665 8.10546 8.32636 9.28819 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.015567 B = 0.003064 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.220736 B = 9135.876884 C =10523.333245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.082 4.082 3 C -0.240 4.240 4 S 0.252 5.748 5 C -0.211 4.211 6 C -0.177 4.177 7 C 0.579 3.421 8 O -0.585 6.585 9 N -0.615 5.615 10 C 0.108 3.892 11 C -0.091 4.091 12 H 0.082 0.918 13 C -0.092 4.092 14 C -0.109 4.109 15 C -0.128 4.128 16 C 0.190 3.810 17 H 0.038 0.962 18 N -0.736 5.736 19 C -0.236 4.236 20 H 0.073 0.927 21 C -0.076 4.076 22 N -0.970 5.970 23 Si 0.968 3.032 24 H -0.282 1.282 25 H -0.297 1.297 26 H -0.276 1.276 27 C -0.098 4.098 28 H 0.081 0.919 29 C 0.133 3.867 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.087 0.913 33 H 0.193 0.807 34 H 0.193 0.807 35 H 0.097 0.903 36 H 0.104 0.896 37 H 0.099 0.901 38 H 0.075 0.925 39 H 0.061 0.939 40 H 0.076 0.924 41 H 0.037 0.963 42 H 0.046 0.954 43 H 0.371 0.629 44 H 0.249 0.751 45 H 0.040 0.960 46 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.067 25.323 5.814 29.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.093 4.093 3 C -0.375 4.375 4 S 0.520 5.480 5 C -0.349 4.349 6 C -0.195 4.195 7 C 0.369 3.631 8 O -0.467 6.467 9 N -0.347 5.347 10 C -0.013 4.013 11 C -0.111 4.111 12 H 0.100 0.900 13 C -0.129 4.129 14 C -0.147 4.147 15 C -0.168 4.168 16 C 0.081 3.919 17 H 0.056 0.944 18 N -0.374 5.374 19 C -0.368 4.368 20 H 0.091 0.909 21 C -0.268 4.268 22 N -0.621 5.621 23 Si 0.797 3.203 24 H -0.208 1.208 25 H -0.223 1.223 26 H -0.202 1.202 27 C -0.118 4.118 28 H 0.100 0.900 29 C 0.011 3.989 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.105 0.895 33 H 0.210 0.790 34 H 0.210 0.790 35 H 0.115 0.885 36 H 0.122 0.878 37 H 0.117 0.883 38 H 0.094 0.906 39 H 0.079 0.921 40 H 0.094 0.906 41 H 0.056 0.944 42 H 0.065 0.935 43 H 0.203 0.797 44 H 0.058 0.942 45 H 0.059 0.941 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 14.680 26.076 5.694 30.461 hybrid contribution -2.688 -2.569 -0.489 3.750 sum 11.992 23.506 5.205 26.897 Atomic orbital electron populations 1.20618 0.89630 1.03531 1.02585 1.19918 0.97515 0.90495 1.01371 1.25633 0.97495 1.02866 1.11523 1.82749 1.03578 0.94190 1.67495 1.26260 0.99000 1.05066 1.04540 1.19966 0.93659 0.92496 1.13409 1.17934 0.83949 0.84212 0.77041 1.90732 1.21078 1.85386 1.49456 1.49142 1.21984 1.05829 1.57783 1.22628 0.83557 0.99477 0.95643 1.22179 0.99344 0.92535 0.97045 0.89997 1.21327 0.93901 0.96481 1.01227 1.21494 1.00056 0.94951 0.98225 1.22129 0.96747 0.98609 0.99320 1.20177 0.92291 0.87243 0.92145 0.94366 1.42596 1.53069 1.35718 1.06063 1.19547 1.17850 1.07062 0.92388 0.90899 1.25502 1.03112 1.02250 0.95924 1.69804 1.48713 1.39381 1.04153 0.85295 0.79029 0.79053 0.76922 1.20814 1.22332 1.20158 1.22008 0.96183 0.95232 0.98348 0.90023 1.21319 0.97995 0.79945 0.99678 0.91257 0.92190 0.89458 0.78995 0.78969 0.88465 0.87781 0.88259 0.90642 0.92053 0.90580 0.94363 0.93507 0.79698 0.94186 0.94131 0.93895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.46 9.86 71.24 0.70 -1.76 16 2 C -0.08 -1.85 6.00 -19.47 -0.12 -1.97 16 3 C -0.24 -3.59 10.91 66.64 0.73 -2.86 16 4 S 0.25 2.81 23.02 -56.49 -1.30 1.51 16 5 C -0.21 -3.48 9.01 67.30 0.61 -2.87 16 6 C -0.18 -4.41 5.73 -19.87 -0.11 -4.52 16 7 C 0.58 19.41 7.65 86.60 0.66 20.07 16 8 O -0.58 -24.99 14.90 -4.16 -0.06 -25.05 16 9 N -0.61 -18.45 3.38 -816.50 -2.76 -21.21 16 10 C 0.11 2.05 4.71 86.07 0.41 2.45 16 11 C -0.09 -1.96 2.51 -10.24 -0.03 -1.98 16 12 H 0.08 1.89 8.01 -2.39 -0.02 1.87 16 13 C -0.09 -1.49 5.71 30.41 0.17 -1.32 16 14 C -0.11 -2.34 5.83 30.71 0.18 -2.16 16 15 C -0.13 -4.13 5.47 30.72 0.17 -3.97 16 16 C 0.19 7.27 2.52 44.77 0.11 7.38 16 17 H 0.04 1.55 7.97 -2.39 -0.02 1.53 16 18 N -0.74 -37.25 5.05 -324.03 -1.64 -38.89 16 19 C -0.24 -13.34 9.95 84.03 0.84 -12.50 16 20 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 21 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16 22 N -0.97 -60.94 13.06 21.65 0.28 -60.66 16 23 Si 0.97 47.50 29.55 68.60 2.03 49.53 16 24 H -0.28 -13.48 7.11 99.48 0.71 -12.78 16 25 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 26 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 27 C -0.10 -3.06 1.81 -10.62 -0.02 -3.08 16 28 H 0.08 2.53 7.95 -2.38 -0.02 2.51 16 29 C 0.13 4.91 6.52 85.82 0.56 5.47 16 30 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.06 1.86 5.84 -2.39 -0.01 1.85 16 32 H 0.09 1.54 8.13 -2.39 -0.02 1.52 16 33 H 0.19 1.77 8.06 -2.91 -0.02 1.74 16 34 H 0.19 2.33 5.39 -2.91 -0.02 2.31 16 35 H 0.10 1.38 7.15 -2.39 -0.02 1.37 16 36 H 0.10 1.51 6.92 -2.39 -0.02 1.49 16 37 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.07 1.16 8.00 -2.38 -0.02 1.14 16 39 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 42 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.37 20.43 7.81 -92.71 -0.72 19.71 16 44 H 0.25 15.31 8.31 -92.71 -0.77 14.54 16 45 H 0.04 1.74 8.08 -2.39 -0.02 1.72 16 46 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 Total: -1.00 -76.37 372.42 2.14 -74.23 By element: Atomic # 1 Polarization: 27.87 SS G_CDS: 0.27 Total: 28.14 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: 5.32 Total: -7.60 kcal Atomic # 7 Polarization: -116.64 SS G_CDS: -4.11 Total: -120.75 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: -0.06 Total: -25.05 kcal Atomic # 14 Polarization: 47.50 SS G_CDS: 2.03 Total: 49.53 kcal Atomic # 16 Polarization: 2.81 SS G_CDS: -1.30 Total: 1.51 kcal Total: -76.37 2.14 -74.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992645799.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.501 kcal (2) G-P(sol) polarization free energy of solvation -76.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds