Wall clock time and date at job start Tue Mar 31 2020 17:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50706 * 109.46994 * 2 1 4 4 C 1.33816 * 124.51844 * 90.00521 * 3 2 1 5 5 C 1.37472 * 115.09650 * 179.97438 * 4 3 2 6 6 C 1.36645 * 113.29926 * 359.97438 * 5 4 3 7 7 C 1.46589 * 125.45835 * 179.97438 * 6 5 4 8 8 O 1.21700 * 120.00091 * 353.17588 * 7 6 5 9 9 N 1.34770 * 119.99877 * 173.17047 * 7 6 5 10 10 C 1.48272 * 127.72483 * 174.00080 * 9 7 6 11 11 C 1.54758 * 104.68138 * 141.28627 * 10 9 7 12 12 C 1.52884 * 104.40145 * 23.63343 * 11 10 9 13 13 C 1.53709 * 111.74856 * 237.42300 * 12 11 10 14 14 C 1.54582 * 102.95173 * 273.45490 * 13 12 11 15 15 N 1.47138 * 107.33059 * 339.03481 * 14 13 12 16 16 C 1.36932 * 125.60198 * 179.09188 * 15 14 13 17 17 H 1.08004 * 119.99696 * 179.97438 * 16 15 14 18 18 C 1.38813 * 120.00437 * 359.97438 * 16 15 14 19 19 N 1.31618 * 119.99574 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00162 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47009 * 89.99829 * 20 18 16 22 22 H 1.48497 * 109.47123 * 210.00062 * 20 18 16 23 23 H 1.48507 * 109.47133 * 330.00346 * 20 18 16 24 24 C 1.47707 * 108.78750 * 359.07253 * 15 14 13 25 25 C 1.48490 * 127.72525 * 354.00012 * 9 7 6 26 26 S 1.70617 * 124.52398 * 270.27282 * 3 2 1 27 27 H 1.09005 * 109.46911 * 299.99707 * 1 2 3 28 28 H 1.08999 * 109.47615 * 59.99807 * 1 2 3 29 29 H 1.08997 * 109.47312 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46911 * 240.00293 * 2 1 3 31 31 H 1.08990 * 109.47401 * 120.00394 * 2 1 3 32 32 H 1.07996 * 122.45219 * 359.97324 * 4 3 2 33 33 H 1.07999 * 123.35065 * 179.97438 * 5 4 3 34 34 H 1.09007 * 110.39606 * 22.48549 * 10 9 7 35 35 H 1.09006 * 110.39760 * 260.09154 * 10 9 7 36 36 H 1.08997 * 110.44336 * 264.90742 * 11 10 9 37 37 H 1.08993 * 110.55063 * 142.42164 * 11 10 9 38 38 H 1.09001 * 110.74833 * 155.03497 * 13 12 11 39 39 H 1.09000 * 110.74797 * 31.87161 * 13 12 11 40 40 H 1.08997 * 109.87553 * 98.47322 * 14 13 12 41 41 H 1.08999 * 109.86820 * 219.46075 * 14 13 12 42 42 H 0.97007 * 119.99438 * 180.02562 * 19 18 16 43 43 H 1.08995 * 110.38915 * 141.39711 * 24 15 14 44 44 H 1.09007 * 110.38871 * 263.77585 * 24 15 14 45 45 H 1.09001 * 110.47121 * 99.56679 * 25 9 7 46 46 H 1.09006 * 110.47512 * 336.96011 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2852 2.1358 1.1026 5 6 2.7377 3.4142 0.8775 6 6 2.8478 3.7229 -0.4490 7 6 3.3023 5.0080 -0.9882 8 8 3.5005 5.9464 -0.2390 9 7 3.5008 5.1504 -2.3136 10 6 3.8363 6.3912 -3.0526 11 6 4.8501 5.9427 -4.1325 12 6 4.5676 4.4524 -4.3235 13 6 5.8187 3.5978 -4.0641 14 6 6.5269 3.5945 -5.4381 15 7 5.5156 3.9282 -6.4534 16 6 5.7445 4.0449 -7.7984 17 1 4.9321 4.2944 -8.4648 18 6 7.0208 3.8425 -8.3054 19 7 8.0108 3.5380 -7.4933 20 14 7.3332 4.0024 -10.1401 21 1 7.6980 5.4060 -10.4597 22 1 8.4452 3.1001 -10.5334 23 1 6.1047 3.6282 -10.8859 24 6 4.2128 4.1162 -5.7832 25 6 3.4325 4.0996 -3.3605 26 16 2.3483 2.3348 -1.4057 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 2.1440 1.7376 2.0965 33 1 2.9819 4.1058 1.6703 34 1 4.2923 7.1206 -2.3831 35 1 2.9440 6.8086 -3.5192 36 1 5.8711 6.0949 -3.7828 37 1 4.6824 6.4845 -5.0632 38 1 5.5407 2.5855 -3.7704 39 1 6.4506 4.0587 -3.3050 40 1 7.3214 4.3406 -5.4473 41 1 6.9436 2.6072 -5.6377 42 1 8.9028 3.3969 -7.8476 43 1 3.6662 4.9410 -6.2403 44 1 3.6260 3.1988 -5.8296 45 1 2.4718 4.1352 -3.8743 46 1 3.5957 3.1145 -2.9233 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041449871.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:10 Heat of formation + Delta-G solvation = 25.123952 kcal Electronic energy + Delta-G solvation = -26755.326894 eV Core-core repulsion = 23158.141398 eV Total energy + Delta-G solvation = -3597.185496 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.25995 -38.79695 -37.76693 -35.64803 -33.99451 -32.62798 -30.79522 -29.59693 -28.62569 -28.42960 -25.90550 -25.25916 -23.84439 -22.78241 -22.46330 -20.85117 -20.25719 -19.00128 -18.41988 -17.96890 -16.86504 -16.12099 -15.80601 -15.76385 -14.92512 -14.74349 -14.46575 -14.22071 -14.08450 -13.92973 -13.82541 -13.26999 -13.10942 -12.83110 -12.68129 -12.53613 -12.20402 -12.02094 -12.00943 -11.79870 -11.56064 -11.47249 -11.39255 -11.06362 -10.94586 -10.80232 -10.59454 -10.22846 -10.13033 -9.99697 -9.95455 -9.77221 -9.65384 -8.93188 -8.69881 -8.61229 -8.57233 -6.85253 -5.72814 -3.06484 0.38653 1.33598 1.77647 2.25648 2.87912 3.17820 3.38742 3.43912 3.45813 4.37316 4.44553 4.47356 4.68431 4.71259 4.93203 4.96059 5.01284 5.08556 5.23021 5.33104 5.38165 5.42535 5.47744 5.50774 5.54339 5.58472 5.66688 5.79555 5.81724 5.83415 5.86742 5.91268 5.94974 6.06913 6.22232 6.24932 6.37935 6.40338 6.47117 6.58434 6.67229 6.78776 7.48961 7.54477 7.60959 7.81416 8.08163 8.23396 9.19980 9.80190 10.46016 11.38648 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.016948 B = 0.003025 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.671441 B = 9254.593244 C =10272.164718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.056 4.056 3 C -0.210 4.210 4 C -0.156 4.156 5 C -0.054 4.054 6 C -0.266 4.266 7 C 0.610 3.390 8 O -0.539 6.539 9 N -0.619 5.619 10 C 0.107 3.893 11 C -0.110 4.110 12 C -0.082 4.082 13 C -0.132 4.132 14 C 0.181 3.819 15 N -0.603 5.603 16 C -0.228 4.228 17 H 0.078 0.922 18 C -0.007 4.007 19 N -0.921 5.921 20 Si 0.911 3.089 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.151 3.849 25 C 0.108 3.892 26 S 0.226 5.774 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.139 0.861 33 H 0.150 0.850 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.046 0.954 41 H 0.042 0.958 42 H 0.252 0.748 43 H 0.042 0.958 44 H 0.021 0.979 45 H 0.080 0.920 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.807 -4.301 15.326 21.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.095 4.095 3 C -0.329 4.329 4 C -0.187 4.187 5 C -0.087 4.087 6 C -0.386 4.386 7 C 0.400 3.600 8 O -0.418 6.418 9 N -0.352 5.352 10 C -0.015 4.015 11 C -0.148 4.148 12 C -0.084 4.084 13 C -0.171 4.171 14 C 0.056 3.944 15 N -0.329 5.329 16 C -0.357 4.357 17 H 0.096 0.904 18 C -0.204 4.204 19 N -0.568 5.568 20 Si 0.742 3.258 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.207 1.207 24 C 0.025 3.975 25 C -0.016 4.016 26 S 0.495 5.505 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.157 0.843 33 H 0.168 0.832 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.105 0.895 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.038 0.962 45 H 0.098 0.902 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -13.651 -4.143 14.130 20.079 hybrid contribution 0.418 0.189 0.647 0.793 sum -13.233 -3.954 14.777 20.226 Atomic orbital electron populations 1.21796 0.94115 1.02127 1.02549 1.20146 0.96299 0.89575 1.03527 1.24698 1.06281 1.02438 0.99521 1.19889 1.05229 0.94090 0.99452 1.20687 0.96786 0.96192 0.95042 1.24507 1.16715 0.99372 0.98046 1.16489 0.77137 0.86160 0.80260 1.90811 1.53148 1.40765 1.57102 1.48931 1.69185 1.11905 1.05147 1.22517 0.98658 0.86776 0.93526 1.22334 0.99143 0.94838 0.98486 1.21695 0.94979 0.95696 0.96073 1.22858 0.95840 0.97944 1.00438 1.21186 0.90455 1.00181 0.82586 1.44512 1.02797 1.82458 1.03179 1.19035 0.94197 1.41037 0.81384 0.90442 1.24794 0.95812 1.01873 0.97903 1.69968 1.00297 1.53904 1.32670 0.86136 0.77507 0.77443 0.84757 1.21635 1.21725 1.20711 1.21449 0.90011 0.97570 0.88519 1.22536 0.99883 0.90842 0.88358 1.83520 1.58726 1.02158 1.06100 0.92285 0.92326 0.91895 0.90501 0.90012 0.84284 0.83199 0.89952 0.90962 0.90649 0.89483 0.92453 0.92121 0.93584 0.93946 0.93770 0.93948 0.96159 0.90199 0.90094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.89 37.16 0.37 -0.58 16 2 C -0.06 -0.41 6.37 -27.88 -0.18 -0.59 16 3 C -0.21 -2.03 5.53 -35.86 -0.20 -2.22 16 4 C -0.16 -1.54 10.00 -41.41 -0.41 -1.96 16 5 C -0.05 -0.63 10.02 -40.44 -0.41 -1.04 16 6 C -0.27 -3.54 6.36 -36.79 -0.23 -3.77 16 7 C 0.61 9.57 7.86 -12.90 -0.10 9.47 16 8 O -0.54 -9.94 17.10 5.19 0.09 -9.85 16 9 N -0.62 -8.96 3.33 -171.11 -0.57 -9.53 16 10 C 0.11 1.46 7.10 -2.14 -0.02 1.45 16 11 C -0.11 -1.68 6.28 -25.86 -0.16 -1.84 16 12 C -0.08 -1.33 0.82 -153.72 -0.13 -1.45 16 13 C -0.13 -2.39 5.83 -25.53 -0.15 -2.54 16 14 C 0.18 4.22 5.33 -2.86 -0.02 4.21 16 15 N -0.60 -14.60 3.41 -170.20 -0.58 -15.18 16 16 C -0.23 -6.13 10.28 -15.06 -0.15 -6.29 16 17 H 0.08 2.00 7.83 -52.48 -0.41 1.59 16 18 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 19 N -0.92 -26.53 10.30 55.49 0.57 -25.96 16 20 Si 0.91 21.68 29.55 -169.99 -5.02 16.66 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 24 C 0.15 2.86 6.07 -2.89 -0.02 2.84 16 25 C 0.11 1.46 5.04 -2.95 -0.01 1.45 16 26 S 0.23 2.45 18.78 -107.50 -2.02 0.43 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 33 H 0.15 1.68 8.06 -52.49 -0.42 1.26 16 34 H 0.08 1.15 7.85 -51.92 -0.41 0.74 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.07 1.22 7.51 -51.93 -0.39 0.83 16 37 H 0.09 1.36 7.55 -51.93 -0.39 0.97 16 38 H 0.06 0.97 7.73 -51.93 -0.40 0.57 16 39 H 0.06 1.06 7.71 -51.93 -0.40 0.66 16 40 H 0.05 1.20 7.39 -51.93 -0.38 0.82 16 41 H 0.04 1.11 7.49 -51.93 -0.39 0.72 16 42 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 43 H 0.04 0.77 7.76 -51.93 -0.40 0.37 16 44 H 0.02 0.38 8.06 -51.93 -0.42 -0.04 16 45 H 0.08 0.96 7.95 -51.93 -0.41 0.55 16 46 H 0.08 1.06 4.35 -30.37 -0.13 0.93 16 LS Contribution 374.51 15.07 5.64 5.64 Total: -1.00 -31.47 374.51 -10.86 -42.33 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -7.06 Total: -1.37 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: -1.91 Total: -3.17 kcal Atomic # 7 Polarization: -50.09 SS G_CDS: -0.58 Total: -50.67 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.09 Total: -9.85 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: 2.45 SS G_CDS: -2.02 Total: 0.43 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.47 -10.86 -42.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041449871.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.452 kcal (2) G-P(sol) polarization free energy of solvation -31.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds