Wall clock time and date at job start Tue Mar 31 2020 17:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50706 * 109.46994 * 2 1 4 4 C 1.33816 * 124.51844 * 90.00521 * 3 2 1 5 5 C 1.37472 * 115.09650 * 179.97438 * 4 3 2 6 6 C 1.36645 * 113.29926 * 359.97438 * 5 4 3 7 7 C 1.46589 * 125.45835 * 179.97438 * 6 5 4 8 8 O 1.21700 * 120.00091 * 353.17588 * 7 6 5 9 9 N 1.34770 * 119.99877 * 173.17047 * 7 6 5 10 10 C 1.48272 * 127.72483 * 174.00080 * 9 7 6 11 11 C 1.54758 * 104.68138 * 141.28627 * 10 9 7 12 12 C 1.52884 * 104.40145 * 23.63343 * 11 10 9 13 13 C 1.53709 * 111.74856 * 237.42300 * 12 11 10 14 14 C 1.54582 * 102.95173 * 273.45490 * 13 12 11 15 15 N 1.47138 * 107.33059 * 339.03481 * 14 13 12 16 16 C 1.36932 * 125.60198 * 179.09188 * 15 14 13 17 17 H 1.08004 * 119.99696 * 179.97438 * 16 15 14 18 18 C 1.38813 * 120.00437 * 359.97438 * 16 15 14 19 19 N 1.31618 * 119.99574 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00162 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47009 * 89.99829 * 20 18 16 22 22 H 1.48497 * 109.47123 * 210.00062 * 20 18 16 23 23 H 1.48507 * 109.47133 * 330.00346 * 20 18 16 24 24 C 1.47707 * 108.78750 * 359.07253 * 15 14 13 25 25 C 1.48490 * 127.72525 * 354.00012 * 9 7 6 26 26 S 1.70617 * 124.52398 * 270.27282 * 3 2 1 27 27 H 1.09005 * 109.46911 * 299.99707 * 1 2 3 28 28 H 1.08999 * 109.47615 * 59.99807 * 1 2 3 29 29 H 1.08997 * 109.47312 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46911 * 240.00293 * 2 1 3 31 31 H 1.08990 * 109.47401 * 120.00394 * 2 1 3 32 32 H 1.07996 * 122.45219 * 359.97324 * 4 3 2 33 33 H 1.07999 * 123.35065 * 179.97438 * 5 4 3 34 34 H 1.09007 * 110.39606 * 22.48549 * 10 9 7 35 35 H 1.09006 * 110.39760 * 260.09154 * 10 9 7 36 36 H 1.08997 * 110.44336 * 264.90742 * 11 10 9 37 37 H 1.08993 * 110.55063 * 142.42164 * 11 10 9 38 38 H 1.09001 * 110.74833 * 155.03497 * 13 12 11 39 39 H 1.09000 * 110.74797 * 31.87161 * 13 12 11 40 40 H 1.08997 * 109.87553 * 98.47322 * 14 13 12 41 41 H 1.08999 * 109.86820 * 219.46075 * 14 13 12 42 42 H 0.97007 * 119.99438 * 180.02562 * 19 18 16 43 43 H 1.08995 * 110.38915 * 141.39711 * 24 15 14 44 44 H 1.09007 * 110.38871 * 263.77585 * 24 15 14 45 45 H 1.09001 * 110.47121 * 99.56679 * 25 9 7 46 46 H 1.09006 * 110.47512 * 336.96011 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2852 2.1358 1.1026 5 6 2.7377 3.4142 0.8775 6 6 2.8478 3.7229 -0.4490 7 6 3.3023 5.0080 -0.9882 8 8 3.5005 5.9464 -0.2390 9 7 3.5008 5.1504 -2.3136 10 6 3.8363 6.3912 -3.0526 11 6 4.8501 5.9427 -4.1325 12 6 4.5676 4.4524 -4.3235 13 6 5.8187 3.5978 -4.0641 14 6 6.5269 3.5945 -5.4381 15 7 5.5156 3.9282 -6.4534 16 6 5.7445 4.0449 -7.7984 17 1 4.9321 4.2944 -8.4648 18 6 7.0208 3.8425 -8.3054 19 7 8.0108 3.5380 -7.4933 20 14 7.3332 4.0024 -10.1401 21 1 7.6980 5.4060 -10.4597 22 1 8.4452 3.1001 -10.5334 23 1 6.1047 3.6282 -10.8859 24 6 4.2128 4.1162 -5.7832 25 6 3.4325 4.0996 -3.3605 26 16 2.3483 2.3348 -1.4057 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 2.1440 1.7376 2.0965 33 1 2.9819 4.1058 1.6703 34 1 4.2923 7.1206 -2.3831 35 1 2.9440 6.8086 -3.5192 36 1 5.8711 6.0949 -3.7828 37 1 4.6824 6.4845 -5.0632 38 1 5.5407 2.5855 -3.7704 39 1 6.4506 4.0587 -3.3050 40 1 7.3214 4.3406 -5.4473 41 1 6.9436 2.6072 -5.6377 42 1 8.9028 3.3969 -7.8476 43 1 3.6662 4.9410 -6.2403 44 1 3.6260 3.1988 -5.8296 45 1 2.4718 4.1352 -3.8743 46 1 3.5957 3.1145 -2.9233 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041449871.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:09 Heat of formation + Delta-G solvation = 7.957304 kcal Electronic energy + Delta-G solvation = -26756.071296 eV Core-core repulsion = 23158.141398 eV Total energy + Delta-G solvation = -3597.929897 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.50448 -39.98598 -38.75354 -37.16368 -34.67824 -34.39912 -32.18664 -31.16747 -30.03744 -29.42786 -27.34390 -26.44597 -25.22560 -23.99752 -23.18755 -22.13267 -21.82062 -20.29805 -19.46135 -19.04752 -18.68712 -17.07965 -16.92549 -16.85779 -16.69445 -15.86988 -15.74775 -15.64392 -15.33481 -14.92323 -14.78186 -14.33813 -14.30588 -14.03974 -13.86804 -13.76224 -13.50863 -13.25737 -13.18109 -12.90252 -12.80759 -12.75038 -12.61573 -12.41506 -12.32169 -12.02613 -12.00962 -11.83143 -11.68281 -11.44945 -11.39030 -11.27469 -11.16884 -10.66201 -9.99747 -9.56580 -9.48696 -8.84496 -7.80828 -5.15440 -0.50472 0.47753 0.94164 1.37488 1.48803 1.49882 1.58428 1.77260 2.11974 2.52681 3.32386 3.35159 3.44217 3.61697 3.72918 3.78148 3.92826 4.15795 4.19686 4.27618 4.30367 4.35347 4.42558 4.43152 4.49793 4.58001 4.64524 4.74644 4.79975 4.83575 4.90030 4.94956 4.98789 5.03843 5.06730 5.13937 5.18279 5.23126 5.30484 5.36308 5.38054 5.45575 5.50911 5.68628 5.80518 6.22759 6.35363 6.92909 7.14020 7.81965 8.46481 9.29584 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.016948 B = 0.003025 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.671441 B = 9254.593244 C =10272.164718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.059 4.059 3 C -0.198 4.198 4 C -0.163 4.163 5 C -0.051 4.051 6 C -0.303 4.303 7 C 0.607 3.393 8 O -0.578 6.578 9 N -0.620 5.620 10 C 0.112 3.888 11 C -0.107 4.107 12 C -0.072 4.072 13 C -0.119 4.119 14 C 0.192 3.808 15 N -0.623 5.623 16 C -0.234 4.234 17 H 0.087 0.913 18 C -0.068 4.068 19 N -0.953 5.953 20 Si 0.975 3.025 21 H -0.289 1.289 22 H -0.299 1.299 23 H -0.267 1.267 24 C 0.148 3.852 25 C 0.116 3.884 26 S 0.238 5.762 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.164 0.836 33 H 0.149 0.851 34 H 0.076 0.924 35 H 0.096 0.904 36 H 0.059 0.941 37 H 0.084 0.916 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.007 0.993 41 H 0.005 0.995 42 H 0.244 0.756 43 H 0.054 0.946 44 H 0.036 0.964 45 H 0.105 0.895 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.369 -5.495 15.875 23.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.098 4.098 3 C -0.317 4.317 4 C -0.192 4.192 5 C -0.085 4.085 6 C -0.423 4.423 7 C 0.398 3.602 8 O -0.460 6.460 9 N -0.352 5.352 10 C -0.009 4.009 11 C -0.145 4.145 12 C -0.074 4.074 13 C -0.157 4.157 14 C 0.067 3.933 15 N -0.349 5.349 16 C -0.363 4.363 17 H 0.105 0.895 18 C -0.261 4.261 19 N -0.602 5.602 20 Si 0.804 3.196 21 H -0.216 1.216 22 H -0.226 1.226 23 H -0.191 1.191 24 C 0.023 3.977 25 C -0.008 4.008 26 S 0.507 5.493 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.096 0.904 30 H 0.101 0.899 31 H 0.116 0.884 32 H 0.181 0.819 33 H 0.166 0.834 34 H 0.095 0.905 35 H 0.114 0.886 36 H 0.078 0.922 37 H 0.102 0.898 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.025 0.975 41 H 0.023 0.977 42 H 0.053 0.947 43 H 0.072 0.928 44 H 0.054 0.946 45 H 0.123 0.877 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -16.259 -5.338 14.666 22.537 hybrid contribution 1.167 0.494 0.521 1.370 sum -15.092 -4.843 15.186 21.951 Atomic orbital electron populations 1.21797 0.93326 1.03075 1.02281 1.20299 0.96871 0.87975 1.04625 1.25060 1.04633 1.03316 0.98738 1.20084 1.05069 0.93252 1.00781 1.20901 0.95922 0.97029 0.94663 1.24403 1.19229 0.99547 0.99074 1.16832 0.76548 0.86636 0.80161 1.90778 1.55079 1.42286 1.57904 1.48956 1.68807 1.12268 1.05129 1.22518 0.99046 0.86577 0.92801 1.22258 0.98906 0.94429 0.98906 1.21564 0.94907 0.95775 0.95176 1.22698 0.96364 0.99557 0.97119 1.20861 0.90265 0.96706 0.85491 1.44782 1.05007 1.82313 1.02832 1.19463 0.94364 1.39501 0.82984 0.89550 1.25609 0.95908 1.02637 1.01933 1.70198 1.00251 1.55592 1.34194 0.85126 0.77389 0.76929 0.80184 1.21582 1.22568 1.19128 1.21653 0.87898 0.98577 0.89554 1.22508 0.99690 0.91003 0.87553 1.83303 1.58490 1.01094 1.06400 0.92274 0.92909 0.90403 0.89937 0.88419 0.81870 0.83358 0.90538 0.88587 0.92200 0.89762 0.90779 0.91755 0.97505 0.97697 0.94673 0.92773 0.94589 0.87681 0.89283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.89 71.98 0.71 -0.70 16 2 C -0.06 -0.65 6.37 29.85 0.19 -0.46 16 3 C -0.20 -3.24 5.53 24.68 0.14 -3.11 16 4 C -0.16 -2.79 10.00 21.08 0.21 -2.58 16 5 C -0.05 -1.13 10.02 21.72 0.22 -0.91 16 6 C -0.30 -7.65 6.36 24.08 0.15 -7.49 16 7 C 0.61 18.58 7.86 86.42 0.68 19.26 16 8 O -0.58 -21.41 17.10 -4.35 -0.07 -21.48 16 9 N -0.62 -16.99 3.33 -813.49 -2.71 -19.70 16 10 C 0.11 2.92 7.10 86.64 0.61 3.53 16 11 C -0.11 -3.18 6.28 31.16 0.20 -2.99 16 12 C -0.07 -2.23 0.82 -51.67 -0.04 -2.27 16 13 C -0.12 -4.27 5.83 31.37 0.18 -4.08 16 14 C 0.19 9.28 5.33 86.80 0.46 9.74 16 15 N -0.62 -30.28 3.41 -692.38 -2.36 -32.64 16 16 C -0.23 -12.60 10.28 84.03 0.86 -11.73 16 17 H 0.09 4.38 7.83 -2.91 -0.02 4.36 16 18 C -0.07 -3.81 5.49 84.86 0.47 -3.35 16 19 N -0.95 -56.99 10.30 21.65 0.22 -56.76 16 20 Si 0.97 45.10 29.55 68.60 2.03 47.12 16 21 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 22 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 23 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 24 C 0.15 5.35 6.07 86.46 0.52 5.87 16 25 C 0.12 2.85 5.04 85.99 0.43 3.29 16 26 S 0.24 4.58 18.78 -56.49 -1.06 3.52 16 27 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 28 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 31 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.16 1.96 8.06 -2.91 -0.02 1.93 16 33 H 0.15 3.25 8.06 -2.91 -0.02 3.22 16 34 H 0.08 2.10 7.85 -2.38 -0.02 2.08 16 35 H 0.10 2.07 8.14 -2.38 -0.02 2.05 16 36 H 0.06 1.97 7.51 -2.39 -0.02 1.95 16 37 H 0.08 2.57 7.55 -2.39 -0.02 2.55 16 38 H 0.07 2.41 7.73 -2.39 -0.02 2.39 16 39 H 0.06 2.26 7.71 -2.39 -0.02 2.24 16 40 H 0.01 0.37 7.39 -2.39 -0.02 0.35 16 41 H 0.00 0.26 7.49 -2.39 -0.02 0.25 16 42 H 0.24 14.32 8.31 -92.70 -0.77 13.55 16 43 H 0.05 1.85 7.76 -2.39 -0.02 1.83 16 44 H 0.04 1.23 8.06 -2.38 -0.02 1.21 16 45 H 0.11 2.14 7.95 -2.39 -0.02 2.12 16 46 H 0.09 2.09 4.35 -16.09 -0.07 2.02 16 Total: -1.00 -70.22 374.51 2.96 -67.26 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: 0.91 Total: 10.66 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: 6.00 Total: 2.02 kcal Atomic # 7 Polarization: -104.26 SS G_CDS: -4.85 Total: -109.11 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: -0.07 Total: -21.48 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.12 kcal Atomic # 16 Polarization: 4.58 SS G_CDS: -1.06 Total: 3.52 kcal Total: -70.22 2.96 -67.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041449871.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.222 kcal (2) G-P(sol) polarization free energy of solvation -70.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds