Wall clock time and date at job start Tue Mar 31 2020 17:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38428 * 122.53569 * 2 1 4 4 C 1.33396 * 114.91840 * 180.27319 * 3 2 1 5 5 S 1.75880 * 109.59152 * 359.76919 * 4 3 2 6 6 C 1.33383 * 122.54334 * 179.82741 * 2 1 3 7 7 C 1.50704 * 125.20337 * 0.02562 * 6 2 1 8 8 H 1.08993 * 115.54802 * 334.05007 * 7 6 2 9 9 C 1.53076 * 117.49372 * 188.32181 * 7 6 2 10 10 C 1.53002 * 117.49839 * 119.71832 * 7 6 2 11 11 H 1.08996 * 117.50018 * 359.97438 * 10 7 6 12 12 C 1.50698 * 117.49741 * 214.98067 * 10 7 6 13 13 O 1.21279 * 119.99831 * 0.08834 * 12 10 7 14 14 N 1.34774 * 119.99951 * 180.08942 * 12 10 7 15 15 C 1.46494 * 120.00193 * 180.02562 * 14 12 10 16 16 H 1.08997 * 110.92117 * 37.44287 * 15 14 12 17 17 C 1.54912 * 111.00232 * 273.54394 * 15 14 12 18 18 N 1.47426 * 104.83261 * 204.91520 * 17 15 14 19 19 C 1.36941 * 125.64875 * 203.86480 * 18 17 15 20 20 H 1.08001 * 120.00063 * 180.02562 * 19 18 17 21 21 C 1.38810 * 119.99930 * 0.02562 * 19 18 17 22 22 N 1.31617 * 120.00219 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00125 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46763 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47257 * 119.99870 * 23 21 19 26 26 H 1.48497 * 109.47230 * 239.99856 * 23 21 19 27 27 C 1.47024 * 108.70449 * 24.12870 * 18 17 15 28 28 C 1.54327 * 107.26774 * 358.94057 * 27 18 17 29 29 H 1.08996 * 110.72159 * 96.17410 * 28 27 18 30 30 C 1.53003 * 110.71693 * 219.44369 * 28 27 18 31 31 H 1.09005 * 109.47316 * 270.17057 * 1 2 3 32 32 H 1.08993 * 109.47589 * 30.17637 * 1 2 3 33 33 H 1.09004 * 109.46979 * 150.17272 * 1 2 3 34 34 H 1.08000 * 122.54170 * 0.03677 * 3 2 1 35 35 H 1.07994 * 125.19877 * 179.74522 * 4 3 2 36 36 H 1.08997 * 117.51280 * 145.03574 * 9 7 6 37 37 H 1.08996 * 117.49471 * 359.97438 * 9 7 6 38 38 H 0.97002 * 119.99998 * 0.02562 * 14 12 10 39 39 H 1.09002 * 110.36496 * 86.07936 * 17 15 14 40 40 H 1.08995 * 110.46379 * 323.80303 * 17 15 14 41 41 H 0.97004 * 120.00482 * 180.02562 * 22 21 19 42 42 H 1.08995 * 109.88316 * 118.35549 * 27 18 17 43 43 H 1.09002 * 109.88101 * 239.52444 * 27 18 17 44 44 H 1.09000 * 109.46783 * 173.52142 * 30 28 27 45 45 H 1.09005 * 109.46975 * 293.52220 * 30 28 27 46 46 H 1.08994 * 109.47150 * 53.52633 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2515 1.1670 0.0000 4 6 3.5736 0.9902 -0.0058 5 16 3.9386 -0.7303 -0.0050 6 6 2.2245 -1.1244 0.0034 7 6 1.6538 -2.5192 0.0070 8 1 0.6572 -2.6182 0.4372 9 6 2.6296 -3.6815 0.2072 10 6 2.0094 -3.4311 -1.1690 11 1 2.6557 -3.0221 -1.9455 12 6 0.9551 -4.3977 -1.6434 13 8 -0.1273 -4.4306 -1.0973 14 7 1.2152 -5.2258 -2.6745 15 6 0.1902 -6.1651 -3.1361 16 1 -0.8011 -5.7144 -3.0874 17 6 0.2407 -7.4844 -2.3256 18 7 -0.3436 -8.4997 -3.2207 19 6 -0.9274 -9.6730 -2.8232 20 1 -1.3274 -10.3539 -3.5600 21 6 -1.0050 -9.9871 -1.4734 22 7 -0.5180 -9.1572 -0.5754 23 14 -1.8007 -11.5879 -0.9312 24 1 -2.2649 -12.3391 -2.1251 25 1 -0.8099 -12.4059 -0.1866 26 1 -2.9593 -11.2914 -0.0509 27 6 -0.1900 -8.0471 -4.6110 28 6 0.5024 -6.6685 -4.5702 29 1 1.5774 -6.7723 -4.7170 30 6 -0.1001 -5.7290 -5.6167 31 1 -0.3634 0.0031 1.0277 32 1 -0.3634 0.8883 -0.5165 33 1 -0.3633 -0.8916 -0.5112 34 1 1.7964 2.1465 0.0006 35 1 4.3076 1.7824 -0.0106 36 1 2.2751 -4.5454 0.7693 37 1 3.6839 -3.4369 0.3357 38 1 2.0810 -5.1998 -3.1110 39 1 -0.3531 -7.3937 -1.4161 40 1 1.2711 -7.7421 -2.0810 41 1 -0.5719 -9.3768 0.3679 42 1 0.4261 -8.7550 -5.1654 43 1 -1.1690 -7.9565 -5.0817 44 1 0.3209 -4.7310 -5.4944 45 1 0.1310 -6.1010 -6.6149 46 1 -1.1814 -5.6856 -5.4864 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079685321.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:40 Heat of formation + Delta-G solvation = 42.061679 kcal Electronic energy + Delta-G solvation = -26213.714116 eV Core-core repulsion = 22617.263095 eV Total energy + Delta-G solvation = -3596.451021 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -39.93542 -38.68148 -37.69607 -36.09409 -33.87182 -32.60011 -31.02509 -30.34929 -28.26853 -27.57232 -25.66856 -24.50489 -23.56695 -23.04908 -21.69956 -20.39054 -20.03536 -19.28442 -18.79134 -17.37522 -16.96583 -16.75330 -15.82444 -15.44882 -14.92602 -14.57233 -14.43962 -14.12610 -13.83423 -13.61932 -13.40036 -13.04767 -12.90146 -12.64682 -12.46582 -12.36275 -12.25100 -12.16970 -12.04246 -11.70381 -11.68125 -11.23514 -11.09272 -11.01443 -10.83708 -10.76020 -10.59808 -10.50979 -10.33643 -9.95400 -9.77037 -9.71438 -9.47454 -8.65994 -8.63220 -8.47164 -8.42200 -6.81550 -5.61129 -3.04785 0.76279 1.42486 1.80657 2.44454 2.83905 3.41751 3.44311 3.47608 3.50230 3.90493 4.42119 4.51860 4.63898 4.74338 4.79034 5.03597 5.11229 5.18730 5.22412 5.30730 5.32007 5.43074 5.45227 5.54867 5.55876 5.59425 5.76536 5.81077 5.86167 5.90189 5.97277 6.03591 6.05369 6.16484 6.25892 6.30116 6.36178 6.38496 6.50275 6.67398 6.83218 6.97505 7.49016 7.64639 7.87446 7.97445 8.40379 8.63779 9.23827 9.85154 10.48396 11.41732 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.016974 B = 0.002603 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.224353 B =10752.272873 C =11504.362214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.103 4.103 3 C -0.127 4.127 4 C -0.219 4.219 5 S 0.094 5.906 6 C -0.143 4.143 7 C -0.056 4.056 8 H 0.138 0.862 9 C -0.143 4.143 10 C -0.172 4.172 11 H 0.122 0.878 12 C 0.541 3.459 13 O -0.532 6.532 14 N -0.709 5.709 15 C 0.121 3.879 16 H 0.089 0.911 17 C 0.149 3.851 18 N -0.604 5.604 19 C -0.226 4.226 20 H 0.079 0.921 21 C -0.010 4.010 22 N -0.917 5.917 23 Si 0.914 3.086 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.290 1.290 27 C 0.141 3.859 28 C -0.111 4.111 29 H 0.074 0.926 30 C -0.137 4.137 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.139 0.861 35 H 0.163 0.837 36 H 0.114 0.886 37 H 0.102 0.898 38 H 0.394 0.606 39 H 0.112 0.888 40 H 0.013 0.987 41 H 0.252 0.748 42 H 0.023 0.977 43 H 0.027 0.973 44 H 0.050 0.950 45 H 0.052 0.948 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.517 20.511 -1.848 22.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.115 4.115 3 C -0.157 4.157 4 C -0.354 4.354 5 S 0.359 5.641 6 C -0.260 4.260 7 C -0.076 4.076 8 H 0.155 0.845 9 C -0.180 4.180 10 C -0.194 4.194 11 H 0.140 0.860 12 C 0.326 3.674 13 O -0.408 6.408 14 N -0.359 5.359 15 C 0.016 3.984 16 H 0.107 0.893 17 C 0.023 3.977 18 N -0.330 5.330 19 C -0.354 4.354 20 H 0.097 0.903 21 C -0.206 4.206 22 N -0.565 5.565 23 Si 0.745 3.255 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.217 1.217 27 C 0.015 3.985 28 C -0.131 4.131 29 H 0.092 0.908 30 C -0.195 4.195 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.156 0.844 35 H 0.180 0.820 36 H 0.132 0.868 37 H 0.121 0.879 38 H 0.228 0.772 39 H 0.130 0.870 40 H 0.031 0.969 41 H 0.063 0.937 42 H 0.041 0.959 43 H 0.045 0.955 44 H 0.069 0.931 45 H 0.071 0.929 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 10.038 19.519 -1.286 21.986 hybrid contribution -0.930 0.085 -0.029 0.935 sum 9.108 19.604 -1.315 21.656 Atomic orbital electron populations 1.20553 0.89512 1.03120 1.02460 1.18843 0.97709 0.91329 1.03597 1.20050 0.92840 0.99209 1.03626 1.25553 0.99738 0.99020 1.11128 1.84180 1.05799 1.00488 1.73611 1.23581 0.95269 0.97047 1.10110 1.20471 1.00816 0.85167 1.01142 0.84467 1.23153 0.98373 1.00091 0.96429 1.22414 1.01950 1.01558 0.93493 0.86028 1.19383 0.87552 0.80478 0.79966 1.90731 1.24687 1.69610 1.55762 1.45780 1.17554 1.38162 1.34366 1.22683 0.90917 0.91192 0.93633 0.89297 1.22217 0.97516 0.82782 0.95138 1.44415 1.68741 1.20383 0.99465 1.19105 1.30429 0.94416 0.91444 0.90307 1.24823 1.01206 0.98836 0.95748 1.69823 1.50686 1.35603 1.00385 0.86006 0.78601 0.82573 0.78351 1.20518 1.21786 1.21690 1.21343 0.96776 0.91598 0.88808 1.22424 0.99930 0.96348 0.94380 0.90813 1.21743 1.01096 0.98491 0.98153 0.91155 0.91641 0.90808 0.84363 0.81995 0.86758 0.87930 0.77222 0.87048 0.96943 0.93746 0.95901 0.95471 0.93113 0.92870 0.92464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.94 9.72 36.00 0.35 -0.59 16 2 C -0.10 -1.09 5.80 -106.25 -0.62 -1.71 16 3 C -0.13 -1.15 9.98 -41.20 -0.41 -1.57 16 4 C -0.22 -1.88 11.23 29.04 0.33 -1.55 16 5 S 0.09 0.89 22.16 -107.50 -2.38 -1.49 16 6 C -0.14 -1.60 6.13 -36.00 -0.22 -1.82 16 7 C -0.06 -0.68 4.98 -91.73 -0.46 -1.14 16 8 H 0.14 1.89 7.07 -51.93 -0.37 1.53 16 9 C -0.14 -1.68 9.75 -26.69 -0.26 -1.94 16 10 C -0.17 -2.17 5.89 -91.77 -0.54 -2.71 16 11 H 0.12 1.27 8.14 -51.93 -0.42 0.85 16 12 C 0.54 9.06 7.61 -10.99 -0.08 8.98 16 13 O -0.53 -11.23 16.00 5.56 0.09 -11.14 16 14 N -0.71 -11.30 5.23 -51.73 -0.27 -11.57 16 15 C 0.12 2.35 2.76 -65.78 -0.18 2.17 16 16 H 0.09 1.92 7.64 -51.93 -0.40 1.52 16 17 C 0.15 3.73 5.57 -2.53 -0.01 3.72 16 18 N -0.60 -15.72 3.39 -170.07 -0.58 -16.30 16 19 C -0.23 -6.40 10.27 -15.06 -0.15 -6.55 16 20 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 21 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 22 N -0.92 -27.55 10.09 55.49 0.56 -26.99 16 23 Si 0.91 22.49 29.55 -169.99 -5.02 17.47 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 26 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 27 C 0.14 2.93 6.84 -3.06 -0.02 2.91 16 28 C -0.11 -1.87 3.17 -88.78 -0.28 -2.15 16 29 H 0.07 1.13 8.00 -51.93 -0.42 0.71 16 30 C -0.14 -1.88 9.16 37.16 0.34 -1.54 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 33 H 0.07 0.81 7.25 -51.93 -0.38 0.43 16 34 H 0.14 0.98 8.06 -52.49 -0.42 0.55 16 35 H 0.16 0.99 8.06 -52.49 -0.42 0.57 16 36 H 0.11 1.49 8.14 -51.93 -0.42 1.06 16 37 H 0.10 1.01 7.27 -51.93 -0.38 0.64 16 38 H 0.39 4.99 8.51 -40.82 -0.35 4.64 16 39 H 0.11 3.28 5.89 -51.93 -0.31 2.97 16 40 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 42 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.03 0.56 7.77 -51.93 -0.40 0.16 16 44 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 45 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.06 0.82 8.06 -51.93 -0.42 0.41 16 LS Contribution 386.94 15.07 5.83 5.83 Total: -1.00 -33.14 386.94 -11.28 -44.42 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -7.18 Total: 5.67 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: -2.32 Total: -5.89 kcal Atomic # 7 Polarization: -54.58 SS G_CDS: -0.29 Total: -54.86 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.09 Total: -11.14 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Atomic # 16 Polarization: 0.89 SS G_CDS: -2.38 Total: -1.49 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.14 -11.28 -44.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079685321.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.477 kcal (2) G-P(sol) polarization free energy of solvation -33.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds