Wall clock time and date at job start Tue Mar 31 2020 17:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 109.46713 * 2 1 4 4 C 1.37469 * 123.35603 * 264.97490 * 3 2 1 5 5 C 1.33812 * 115.10364 * 180.02562 * 4 3 2 6 6 S 1.70611 * 110.95474 * 359.72439 * 5 4 3 7 7 C 1.36655 * 123.34820 * 85.00295 * 3 2 1 8 8 C 1.46574 * 125.46018 * 359.97438 * 7 3 2 9 9 O 1.21704 * 119.99946 * 5.62655 * 8 7 3 10 10 N 1.34773 * 120.00350 * 185.62649 * 8 7 3 11 11 C 1.47191 * 125.64820 * 355.01718 * 10 8 7 12 12 C 1.55412 * 106.93278 * 178.80378 * 11 10 8 13 13 H 1.09005 * 112.44899 * 145.11666 * 12 11 10 14 14 C 1.53083 * 106.81008 * 268.54884 * 12 11 10 15 15 C 1.51494 * 111.61658 * 163.91284 * 14 12 11 16 16 N 1.47235 * 107.91243 * 302.68079 * 15 14 12 17 17 C 1.36932 * 121.39020 * 237.94564 * 16 15 14 18 18 H 1.08005 * 120.00021 * 151.98008 * 17 16 15 19 19 C 1.38811 * 120.00483 * 331.98290 * 17 16 15 20 20 N 1.31620 * 119.99719 * 342.18035 * 19 17 16 21 21 Si 1.86797 * 120.00390 * 162.18205 * 19 17 16 22 22 H 1.48501 * 109.47300 * 94.38793 * 21 19 17 23 23 H 1.48503 * 109.47313 * 214.39192 * 21 19 17 24 24 H 1.48502 * 109.47116 * 334.38942 * 21 19 17 25 25 C 1.46699 * 117.21484 * 57.97343 * 16 15 14 26 26 C 1.50818 * 111.24602 * 307.84984 * 25 16 15 27 27 H 1.09005 * 109.22355 * 167.58189 * 26 25 16 28 28 C 1.47848 * 125.65778 * 174.97523 * 10 8 7 29 29 H 1.08995 * 109.47315 * 60.00377 * 1 2 3 30 30 H 1.09007 * 109.46635 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47223 * 299.99406 * 1 2 3 32 32 H 1.09002 * 109.47418 * 240.00136 * 2 1 3 33 33 H 1.09004 * 109.47363 * 119.99863 * 2 1 3 34 34 H 1.08004 * 122.44332 * 0.04568 * 4 3 2 35 35 H 1.08008 * 124.52097 * 180.02562 * 5 4 3 36 36 H 1.09000 * 109.97141 * 59.43159 * 11 10 8 37 37 H 1.09005 * 109.96693 * 298.17595 * 11 10 8 38 38 H 1.09001 * 109.18510 * 284.35411 * 14 12 11 39 39 H 1.08998 * 109.18838 * 43.60346 * 14 12 11 40 40 H 1.08996 * 110.01328 * 182.88553 * 15 14 12 41 41 H 1.09010 * 109.45810 * 62.15159 * 15 14 12 42 42 H 0.96997 * 120.00161 * 180.02562 * 20 19 17 43 43 H 1.09004 * 109.12422 * 187.39595 * 25 16 15 44 44 H 1.08996 * 109.12706 * 68.30263 * 25 16 15 45 45 H 1.08999 * 110.52321 * 38.05055 * 28 10 8 46 46 H 1.09005 * 110.52295 * 275.31459 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3790 2.1000 -1.1438 5 6 2.8050 3.3540 -0.9525 6 16 2.7859 3.7586 0.7049 7 6 2.1889 2.1623 1.1372 8 6 1.8995 1.7026 2.4986 9 8 1.5814 0.5444 2.6950 10 7 1.9858 2.5624 3.5328 11 6 2.4562 3.9548 3.4539 12 6 2.3482 4.5510 4.8850 13 1 3.1499 5.2563 5.1038 14 6 0.9650 5.1982 4.9918 15 6 0.5840 5.4663 6.4333 16 7 0.6353 4.1872 7.1607 17 6 -0.4625 3.6932 7.8133 18 1 -0.5792 2.6274 7.9434 19 6 -1.4255 4.5622 8.3076 20 7 -1.1401 5.8367 8.4708 21 14 -3.1262 3.9230 8.7412 22 1 -3.1758 3.5891 10.1873 23 1 -4.1391 4.9661 8.4390 24 1 -3.4161 2.7055 7.9419 25 6 1.9119 3.4643 7.1575 26 6 2.4335 3.2825 5.7541 27 1 3.4697 2.9470 5.7971 28 6 1.6227 2.2636 4.9346 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.3121 1.6540 -2.1252 35 1 3.1146 4.0225 -1.7423 36 1 1.8284 4.5215 2.7662 37 1 3.4929 3.9790 3.1178 38 1 0.9680 6.1418 4.4461 39 1 0.2230 4.5326 4.5506 40 1 -0.4236 5.8790 6.4823 41 1 1.2927 6.1692 6.8715 42 1 -1.8128 6.4440 8.8166 43 1 1.7691 2.4854 7.6151 44 1 2.6420 4.0264 7.7397 45 1 1.9124 1.2458 5.1957 46 1 0.5541 2.4101 5.0921 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088210913.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:15 Heat of formation + Delta-G solvation = 18.919748 kcal Electronic energy + Delta-G solvation = -27400.791637 eV Core-core repulsion = 23803.337107 eV Total energy + Delta-G solvation = -3597.454530 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.32757 -39.00455 -37.51644 -35.34765 -32.84835 -32.57082 -31.39055 -30.51672 -29.20836 -27.62895 -26.11496 -24.96234 -23.57613 -22.44342 -21.88997 -21.47438 -20.63407 -18.52521 -18.26717 -17.82269 -16.83711 -15.96981 -15.80274 -15.54197 -15.06253 -14.60037 -14.31688 -14.08697 -13.84685 -13.61121 -13.46723 -13.39264 -13.11558 -13.01947 -12.56006 -12.47191 -12.37661 -12.02570 -11.97837 -11.81249 -11.51594 -11.20318 -11.11392 -11.01400 -10.84711 -10.68459 -10.60549 -10.32145 -10.22037 -9.96197 -9.69687 -9.50496 -9.45063 -8.95291 -8.67617 -8.50696 -8.31985 -6.70859 -5.81785 -3.23432 0.44029 1.40819 1.81900 2.28034 3.06069 3.25522 3.36881 3.44704 3.47926 4.47586 4.52828 4.68138 4.73740 4.97218 5.04868 5.08283 5.13070 5.28127 5.31214 5.38131 5.41715 5.54065 5.60139 5.61221 5.69630 5.76030 5.86352 5.89738 5.97077 6.04964 6.12326 6.17583 6.19102 6.28831 6.37330 6.43062 6.50347 6.56427 6.62626 6.68924 6.78599 6.82417 7.30911 7.62300 7.63074 7.77727 8.23080 8.41713 9.17180 9.80858 10.39746 11.26958 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.016539 B = 0.003394 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.605834 B = 8247.087978 C = 8924.110081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.073 4.073 3 C -0.024 4.024 4 C -0.147 4.147 5 C -0.251 4.251 6 S 0.213 5.787 7 C -0.262 4.262 8 C 0.601 3.399 9 O -0.531 6.531 10 N -0.611 5.611 11 C 0.088 3.912 12 C -0.076 4.076 13 H 0.091 0.909 14 C -0.135 4.135 15 C 0.164 3.836 16 N -0.588 5.588 17 C -0.249 4.249 18 H 0.066 0.934 19 C 0.004 3.996 20 N -0.901 5.901 21 Si 0.899 3.101 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.278 1.278 25 C 0.156 3.844 26 C -0.108 4.108 27 H 0.066 0.934 28 C 0.121 3.879 29 H 0.048 0.952 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.097 0.903 34 H 0.139 0.861 35 H 0.164 0.836 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.050 0.950 39 H 0.057 0.943 40 H 0.094 0.906 41 H 0.017 0.983 42 H 0.253 0.747 43 H 0.056 0.944 44 H 0.023 0.977 45 H 0.073 0.927 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.738 -3.150 -18.121 20.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.112 4.112 3 C -0.039 4.039 4 C -0.178 4.178 5 C -0.388 4.388 6 S 0.483 5.517 7 C -0.383 4.383 8 C 0.389 3.611 9 O -0.410 6.410 10 N -0.344 5.344 11 C -0.036 4.036 12 C -0.095 4.095 13 H 0.109 0.891 14 C -0.174 4.174 15 C 0.039 3.961 16 N -0.310 5.310 17 C -0.378 4.378 18 H 0.084 0.916 19 C -0.195 4.195 20 N -0.545 5.545 21 Si 0.729 3.271 22 H -0.214 1.214 23 H -0.216 1.216 24 H -0.204 1.204 25 C 0.029 3.971 26 C -0.129 4.129 27 H 0.084 0.916 28 C 0.000 4.000 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.115 0.885 34 H 0.157 0.843 35 H 0.182 0.818 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.112 0.888 41 H 0.036 0.964 42 H 0.063 0.937 43 H 0.075 0.925 44 H 0.041 0.959 45 H 0.091 0.909 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 9.825 -2.348 -17.198 19.945 hybrid contribution -1.120 -1.236 -0.939 1.914 sum 8.704 -3.584 -18.137 20.434 Atomic orbital electron populations 1.21606 0.94357 1.01735 1.01770 1.20429 0.96471 0.90699 1.03591 1.19486 0.96529 0.97456 0.90465 1.19866 1.04124 0.94347 0.99452 1.25565 1.08108 1.01347 1.03811 1.83474 1.59989 1.11295 0.96954 1.24446 1.16929 0.99374 0.97509 1.16511 0.77790 0.84678 0.82073 1.90776 1.49234 1.16755 1.84235 1.48501 1.64365 1.12497 1.09036 1.22605 0.98832 0.82390 0.99794 1.22105 0.99672 0.96790 0.90973 0.89054 1.21980 0.94600 0.98990 1.01864 1.20575 1.02012 0.87482 0.86079 1.44021 1.06452 1.21865 1.58692 1.19133 0.97467 0.91356 1.29894 0.91613 1.24993 0.99720 0.95997 0.98780 1.70014 1.33110 1.03337 1.48089 0.86330 0.84496 0.78061 0.78217 1.21449 1.21580 1.20377 1.20150 0.89205 0.96846 0.90935 1.22003 0.98941 0.94224 0.97734 0.91561 1.22228 1.01083 0.98957 0.77705 0.93301 0.92343 0.92241 0.91499 0.88512 0.84286 0.81831 0.90901 0.91614 0.93164 0.92394 0.88826 0.96444 0.93663 0.92509 0.95918 0.90855 0.89654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.83 37.16 0.37 -1.24 16 2 C -0.07 -0.87 5.54 -27.88 -0.15 -1.02 16 3 C -0.02 -0.30 5.16 -105.47 -0.54 -0.84 16 4 C -0.15 -1.50 9.96 -41.42 -0.41 -1.91 16 5 C -0.25 -2.35 10.92 29.18 0.32 -2.03 16 6 S 0.21 2.25 18.47 -107.50 -1.99 0.27 16 7 C -0.26 -3.61 6.38 -36.79 -0.23 -3.85 16 8 C 0.60 9.87 7.80 -12.90 -0.10 9.77 16 9 O -0.53 -9.95 14.26 5.18 0.07 -9.88 16 10 N -0.61 -9.63 3.34 -171.58 -0.57 -10.21 16 11 C 0.09 1.18 4.51 -2.38 -0.01 1.17 16 12 C -0.08 -1.14 3.59 -88.77 -0.32 -1.45 16 13 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 14 C -0.14 -2.37 4.74 -27.45 -0.13 -2.50 16 15 C 0.16 3.65 5.44 -4.40 -0.02 3.63 16 16 N -0.59 -13.85 2.90 -174.69 -0.51 -14.35 16 17 C -0.25 -6.59 9.64 -15.06 -0.15 -6.74 16 18 H 0.07 1.73 7.89 -52.48 -0.41 1.31 16 19 C 0.00 0.10 4.95 -17.43 -0.09 0.01 16 20 N -0.90 -25.40 11.20 55.49 0.62 -24.78 16 21 Si 0.90 21.43 29.59 -169.99 -5.03 16.40 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 C 0.16 3.04 5.92 -5.03 -0.03 3.01 16 26 C -0.11 -1.74 2.81 -90.75 -0.26 -2.00 16 27 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 28 C 0.12 2.08 5.92 -2.86 -0.02 2.06 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.84 7.87 -51.93 -0.41 0.43 16 32 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 33 H 0.10 1.36 6.20 -51.93 -0.32 1.04 16 34 H 0.14 1.11 8.06 -52.48 -0.42 0.69 16 35 H 0.16 1.09 8.06 -52.48 -0.42 0.67 16 36 H 0.07 0.94 6.27 -51.88 -0.33 0.61 16 37 H 0.07 0.76 7.19 -51.93 -0.37 0.39 16 38 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.06 1.11 7.15 -51.93 -0.37 0.74 16 40 H 0.09 2.39 5.93 -51.93 -0.31 2.08 16 41 H 0.02 0.40 8.14 -51.92 -0.42 -0.02 16 42 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 43 H 0.06 1.10 7.93 -51.93 -0.41 0.69 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.07 1.26 8.02 -51.93 -0.42 0.84 16 46 H 0.09 1.70 7.55 -51.93 -0.39 1.30 16 LS Contribution 365.73 15.07 5.51 5.51 Total: -1.00 -29.83 365.73 -10.77 -40.60 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -7.10 Total: 0.38 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: -1.78 Total: -3.94 kcal Atomic # 7 Polarization: -48.88 SS G_CDS: -0.46 Total: -49.34 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.07 Total: -9.88 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.40 kcal Atomic # 16 Polarization: 2.25 SS G_CDS: -1.99 Total: 0.27 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.83 -10.77 -40.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088210913.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.524 kcal (2) G-P(sol) polarization free energy of solvation -29.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds