Wall clock time and date at job start Tue Mar 31 2020 17:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.47408 * 2 1 4 4 C 1.33819 * 124.52160 * 89.99704 * 3 2 1 5 5 C 1.37474 * 115.09919 * 180.02562 * 4 3 2 6 6 C 1.36641 * 113.29696 * 359.97438 * 5 4 3 7 7 C 1.46593 * 125.45717 * 179.97438 * 6 5 4 8 8 O 1.21702 * 119.99787 * 359.97438 * 7 6 5 9 9 N 1.34772 * 119.99995 * 179.97438 * 7 6 5 10 10 C 1.46501 * 120.00230 * 180.02562 * 9 7 6 11 11 C 1.54328 * 111.68481 * 298.88236 * 10 9 7 12 12 C 1.55055 * 103.93251 * 262.79179 * 11 10 9 13 13 C 1.54202 * 102.51016 * 320.56378 * 12 11 10 14 14 C 1.54325 * 104.33997 * 39.00132 * 13 12 11 15 15 H 1.09002 * 111.69353 * 98.36135 * 14 13 12 16 16 C 1.53779 * 109.79197 * 222.84966 * 14 13 12 17 17 N 1.47214 * 106.38335 * 95.22289 * 16 14 13 18 18 C 1.36936 * 126.70263 * 211.32052 * 17 16 14 19 19 H 1.07997 * 119.99727 * 179.97438 * 18 17 16 20 20 C 1.38814 * 119.99999 * 359.95023 * 18 17 16 21 21 N 1.31620 * 119.99826 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99936 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46819 * 90.00508 * 22 20 18 24 24 H 1.48500 * 109.47024 * 210.00389 * 22 20 18 25 25 H 1.48504 * 109.46984 * 330.00521 * 22 20 18 26 26 C 1.47217 * 106.59384 * 31.27818 * 17 16 14 27 27 S 1.70620 * 124.52503 * 270.27060 * 3 2 1 28 28 H 1.08997 * 109.47210 * 300.00161 * 1 2 3 29 29 H 1.09004 * 109.46502 * 60.00084 * 1 2 3 30 30 H 1.08996 * 109.47322 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47210 * 239.99839 * 2 1 3 32 32 H 1.09004 * 109.46502 * 119.99916 * 2 1 3 33 33 H 1.08002 * 122.44997 * 0.02562 * 4 3 2 34 34 H 1.08004 * 123.35139 * 180.02562 * 5 4 3 35 35 H 0.97003 * 120.00016 * 359.97438 * 9 7 6 36 36 H 1.08998 * 110.54140 * 21.40711 * 11 10 9 37 37 H 1.09007 * 110.53016 * 144.18684 * 11 10 9 38 38 H 1.08998 * 110.90402 * 78.15030 * 12 11 10 39 39 H 1.09001 * 110.90571 * 201.70306 * 12 11 10 40 40 H 1.08993 * 109.35760 * 280.73273 * 13 12 11 41 41 H 1.09000 * 111.31940 * 158.23538 * 13 12 11 42 42 H 1.08996 * 110.07105 * 214.45574 * 16 14 13 43 43 H 1.09002 * 110.07162 * 335.99132 * 16 14 13 44 44 H 0.97000 * 119.99622 * 179.97438 * 21 20 18 45 45 H 1.08994 * 110.07063 * 209.49007 * 26 17 16 46 46 H 1.09005 * 110.06643 * 87.94825 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2852 2.1358 1.1025 5 6 2.7368 3.4146 0.8775 6 6 2.8462 3.7234 -0.4491 7 6 3.2997 5.0089 -0.9883 8 8 3.6161 5.9084 -0.2320 9 7 3.3662 5.1946 -2.3215 10 6 3.8200 6.4791 -2.8604 11 6 2.8969 7.6375 -2.4270 12 6 1.9421 7.8257 -3.6341 13 6 2.8846 7.6314 -4.8390 14 6 3.8227 6.4838 -4.4092 15 1 3.5005 5.5257 -4.8171 16 6 5.2695 6.8155 -4.8114 17 7 5.9005 7.4228 -3.6281 18 6 6.8855 8.3741 -3.6234 19 1 7.2722 8.7464 -2.6863 20 6 7.3873 8.8595 -4.8232 21 7 6.9160 8.4058 -5.9653 22 14 8.7315 10.1567 -4.8169 23 1 10.0599 9.4929 -4.8163 24 1 8.6039 11.0077 -6.0271 25 1 8.5992 11.0006 -3.6021 26 6 5.2651 6.8084 -2.4508 27 16 2.3485 2.3347 -1.4057 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8932 -0.5139 0.8901 33 1 2.1447 1.7373 2.0965 34 1 2.9816 4.1060 1.6703 35 1 3.1144 4.4776 -2.9242 36 1 2.3348 7.3649 -1.5338 37 1 3.4768 8.5440 -2.2533 38 1 1.1646 7.0618 -3.6378 39 1 1.5040 8.8238 -3.6316 40 1 3.4520 8.5470 -5.0053 41 1 2.3298 7.3560 -5.7358 42 1 5.7982 5.9044 -5.0913 43 1 5.2743 7.5216 -5.6418 44 1 7.2664 8.7452 -6.8037 45 1 5.2670 7.5094 -1.6162 46 1 5.7930 5.8956 -2.1747 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098927679.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:37 Heat of formation + Delta-G solvation = 13.341129 kcal Electronic energy + Delta-G solvation = -26905.713895 eV Core-core repulsion = 23308.017457 eV Total energy + Delta-G solvation = -3597.696437 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.22890 -38.64805 -37.61648 -34.42236 -34.00661 -33.40766 -31.43158 -29.66309 -28.95936 -27.58173 -25.46553 -24.63252 -24.26518 -22.64853 -21.84837 -20.54236 -20.19004 -19.11407 -18.60764 -17.73221 -17.03809 -16.14762 -15.58358 -15.36268 -14.82878 -14.69353 -14.47834 -14.33153 -13.92015 -13.66323 -13.47566 -13.43339 -13.12672 -13.00430 -12.62970 -12.53100 -12.12427 -11.89272 -11.78639 -11.46667 -11.27147 -11.03860 -11.00862 -10.90338 -10.67225 -10.55338 -10.26253 -10.20618 -10.07008 -9.94129 -9.91658 -9.70277 -9.49360 -8.88897 -8.75902 -8.70480 -8.56828 -6.83857 -5.62504 -3.06675 0.39966 1.29907 1.72364 2.29110 3.30660 3.38023 3.42111 3.47233 3.49170 4.34207 4.50535 4.64941 4.81644 4.87522 5.03314 5.06289 5.16633 5.22982 5.35470 5.37560 5.45101 5.51446 5.56601 5.66735 5.78457 5.82848 5.88398 5.90004 6.02149 6.04213 6.13206 6.16084 6.21609 6.26744 6.38118 6.41687 6.59003 6.66256 6.81584 6.85987 6.97720 7.13576 7.43785 7.64718 7.72122 7.85821 8.37638 8.44709 9.23461 9.83636 10.50913 11.38946 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.021341 B = 0.002862 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.736288 B = 9781.048407 C =10059.003633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.055 4.055 3 C -0.197 4.197 4 C -0.152 4.152 5 C -0.058 4.058 6 C -0.257 4.257 7 C 0.586 3.414 8 O -0.522 6.522 9 N -0.705 5.705 10 C 0.158 3.842 11 C -0.111 4.111 12 C -0.124 4.124 13 C -0.108 4.108 14 C -0.113 4.113 15 H 0.068 0.932 16 C 0.139 3.861 17 N -0.592 5.592 18 C -0.213 4.213 19 H 0.079 0.921 20 C -0.013 4.013 21 N -0.923 5.923 22 Si 0.916 3.084 23 H -0.290 1.290 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.141 3.859 27 S 0.196 5.804 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.142 0.858 34 H 0.153 0.847 35 H 0.392 0.608 36 H 0.064 0.936 37 H 0.079 0.921 38 H 0.054 0.946 39 H 0.061 0.939 40 H 0.079 0.921 41 H 0.058 0.942 42 H 0.004 0.996 43 H 0.130 0.870 44 H 0.252 0.748 45 H 0.052 0.948 46 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.993 -15.695 8.364 23.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.094 4.094 3 C -0.317 4.317 4 C -0.183 4.183 5 C -0.091 4.091 6 C -0.377 4.377 7 C 0.371 3.629 8 O -0.399 6.399 9 N -0.355 5.355 10 C 0.071 3.929 11 C -0.150 4.150 12 C -0.162 4.162 13 C -0.146 4.146 14 C -0.134 4.134 15 H 0.086 0.914 16 C 0.014 3.986 17 N -0.316 5.316 18 C -0.342 4.342 19 H 0.097 0.903 20 C -0.208 4.208 21 N -0.572 5.572 22 Si 0.746 3.254 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.013 3.987 27 S 0.464 5.536 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.160 0.840 34 H 0.170 0.830 35 H 0.226 0.774 36 H 0.083 0.917 37 H 0.098 0.902 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.097 0.903 41 H 0.076 0.924 42 H 0.022 0.978 43 H 0.148 0.852 44 H 0.063 0.937 45 H 0.071 0.929 46 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -14.699 -15.156 7.183 22.302 hybrid contribution 0.712 0.286 1.376 1.575 sum -13.987 -14.870 8.559 22.136 Atomic orbital electron populations 1.21805 0.94104 1.02109 1.02636 1.20142 0.96322 0.89462 1.03498 1.24229 1.07585 1.02030 0.97845 1.19938 1.04722 0.94144 0.99463 1.20741 0.96852 0.96210 0.95293 1.24755 1.15522 0.99450 0.98001 1.16928 0.77879 0.85445 0.82616 1.90835 1.48757 1.42388 1.57956 1.45953 1.67462 1.16320 1.05731 1.21871 0.95731 0.81437 0.93816 1.22654 0.96979 0.98025 0.97308 1.22451 0.97418 1.00470 0.95860 1.22265 0.96517 0.99370 0.96466 1.23041 1.00558 0.97790 0.91986 0.91377 1.22021 0.85240 0.97692 0.93668 1.44452 1.42235 1.44934 1.00010 1.19110 1.09905 1.12167 0.92984 0.90342 1.24754 1.00380 1.00494 0.95135 1.69587 1.44954 1.46063 0.96607 0.86044 0.81422 0.80963 0.76949 1.21690 1.21658 1.20676 1.21512 0.89267 0.96299 0.91583 1.82982 1.59972 1.02860 1.07817 0.92184 0.92345 0.91916 0.90614 0.89862 0.84043 0.82984 0.77375 0.91725 0.90208 0.92686 0.92000 0.90260 0.92351 0.97810 0.85245 0.93692 0.92920 0.96834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.90 37.16 0.37 -0.49 16 2 C -0.06 -0.36 6.36 -27.88 -0.18 -0.53 16 3 C -0.20 -1.79 5.53 -35.86 -0.20 -1.99 16 4 C -0.15 -1.47 10.00 -41.41 -0.41 -1.88 16 5 C -0.06 -0.70 10.01 -40.44 -0.40 -1.11 16 6 C -0.26 -3.45 6.45 -36.79 -0.24 -3.68 16 7 C 0.59 9.76 7.09 -12.89 -0.09 9.67 16 8 O -0.52 -10.38 14.82 5.19 0.08 -10.30 16 9 N -0.70 -11.32 5.21 -46.99 -0.24 -11.56 16 10 C 0.16 2.97 0.92 -129.73 -0.12 2.85 16 11 C -0.11 -2.02 5.52 -24.95 -0.14 -2.16 16 12 C -0.12 -1.95 6.88 -25.02 -0.17 -2.13 16 13 C -0.11 -1.89 6.21 -25.41 -0.16 -2.05 16 14 C -0.11 -2.13 3.65 -88.53 -0.32 -2.46 16 15 H 0.07 1.12 7.71 -51.93 -0.40 0.72 16 16 C 0.14 3.35 5.59 -3.25 -0.02 3.33 16 17 N -0.59 -15.42 3.39 -171.14 -0.58 -16.00 16 18 C -0.21 -6.01 10.34 -15.06 -0.16 -6.17 16 19 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 20 C -0.01 -0.36 5.49 -17.43 -0.10 -0.45 16 21 N -0.92 -26.49 10.08 55.49 0.56 -25.93 16 22 Si 0.92 22.22 29.55 -169.99 -5.02 17.20 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 26 C 0.14 3.24 5.30 -3.25 -0.02 3.22 16 27 S 0.20 1.99 22.10 -107.50 -2.38 -0.39 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 34 H 0.15 1.80 8.06 -52.48 -0.42 1.38 16 35 H 0.39 5.32 7.41 -40.82 -0.30 5.01 16 36 H 0.06 1.17 6.65 -51.93 -0.35 0.83 16 37 H 0.08 1.61 7.56 -51.92 -0.39 1.22 16 38 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.08 1.61 7.61 -51.93 -0.40 1.22 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 16 43 H 0.13 3.44 4.93 -51.93 -0.26 3.19 16 44 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 45 H 0.05 1.27 7.55 -51.93 -0.39 0.87 16 46 H 0.01 0.33 8.08 -51.93 -0.42 -0.09 16 LS Contribution 374.75 15.07 5.65 5.65 Total: -1.00 -31.38 374.75 -11.39 -42.77 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -7.10 Total: 4.58 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: -2.35 Total: -6.02 kcal Atomic # 7 Polarization: -53.22 SS G_CDS: -0.27 Total: -53.49 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.08 Total: -10.30 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Atomic # 16 Polarization: 1.99 SS G_CDS: -2.38 Total: -0.39 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.38 -11.39 -42.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098927679.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.110 kcal (2) G-P(sol) polarization free energy of solvation -31.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds