Wall clock time and date at job start Tue Mar 31 2020 17:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.47408 * 2 1 4 4 C 1.33819 * 124.52160 * 89.99704 * 3 2 1 5 5 C 1.37474 * 115.09919 * 180.02562 * 4 3 2 6 6 C 1.36641 * 113.29696 * 359.97438 * 5 4 3 7 7 C 1.46593 * 125.45717 * 179.97438 * 6 5 4 8 8 O 1.21702 * 119.99787 * 359.97438 * 7 6 5 9 9 N 1.34772 * 119.99995 * 179.97438 * 7 6 5 10 10 C 1.46501 * 120.00230 * 180.02562 * 9 7 6 11 11 C 1.54328 * 111.68481 * 298.88236 * 10 9 7 12 12 C 1.55055 * 103.93251 * 262.79179 * 11 10 9 13 13 C 1.54202 * 102.51016 * 320.56378 * 12 11 10 14 14 C 1.54325 * 104.33997 * 39.00132 * 13 12 11 15 15 H 1.09002 * 111.69353 * 98.36135 * 14 13 12 16 16 C 1.53779 * 109.79197 * 222.84966 * 14 13 12 17 17 N 1.47214 * 106.38335 * 95.22289 * 16 14 13 18 18 C 1.36936 * 126.70263 * 211.32052 * 17 16 14 19 19 H 1.07997 * 119.99727 * 179.97438 * 18 17 16 20 20 C 1.38814 * 119.99999 * 359.95023 * 18 17 16 21 21 N 1.31620 * 119.99826 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99936 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46819 * 90.00508 * 22 20 18 24 24 H 1.48500 * 109.47024 * 210.00389 * 22 20 18 25 25 H 1.48504 * 109.46984 * 330.00521 * 22 20 18 26 26 C 1.47217 * 106.59384 * 31.27818 * 17 16 14 27 27 S 1.70620 * 124.52503 * 270.27060 * 3 2 1 28 28 H 1.08997 * 109.47210 * 300.00161 * 1 2 3 29 29 H 1.09004 * 109.46502 * 60.00084 * 1 2 3 30 30 H 1.08996 * 109.47322 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47210 * 239.99839 * 2 1 3 32 32 H 1.09004 * 109.46502 * 119.99916 * 2 1 3 33 33 H 1.08002 * 122.44997 * 0.02562 * 4 3 2 34 34 H 1.08004 * 123.35139 * 180.02562 * 5 4 3 35 35 H 0.97003 * 120.00016 * 359.97438 * 9 7 6 36 36 H 1.08998 * 110.54140 * 21.40711 * 11 10 9 37 37 H 1.09007 * 110.53016 * 144.18684 * 11 10 9 38 38 H 1.08998 * 110.90402 * 78.15030 * 12 11 10 39 39 H 1.09001 * 110.90571 * 201.70306 * 12 11 10 40 40 H 1.08993 * 109.35760 * 280.73273 * 13 12 11 41 41 H 1.09000 * 111.31940 * 158.23538 * 13 12 11 42 42 H 1.08996 * 110.07105 * 214.45574 * 16 14 13 43 43 H 1.09002 * 110.07162 * 335.99132 * 16 14 13 44 44 H 0.97000 * 119.99622 * 179.97438 * 21 20 18 45 45 H 1.08994 * 110.07063 * 209.49007 * 26 17 16 46 46 H 1.09005 * 110.06643 * 87.94825 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2852 2.1358 1.1025 5 6 2.7368 3.4146 0.8775 6 6 2.8462 3.7234 -0.4491 7 6 3.2997 5.0089 -0.9883 8 8 3.6161 5.9084 -0.2320 9 7 3.3662 5.1946 -2.3215 10 6 3.8200 6.4791 -2.8604 11 6 2.8969 7.6375 -2.4270 12 6 1.9421 7.8257 -3.6341 13 6 2.8846 7.6314 -4.8390 14 6 3.8227 6.4838 -4.4092 15 1 3.5005 5.5257 -4.8171 16 6 5.2695 6.8155 -4.8114 17 7 5.9005 7.4228 -3.6281 18 6 6.8855 8.3741 -3.6234 19 1 7.2722 8.7464 -2.6863 20 6 7.3873 8.8595 -4.8232 21 7 6.9160 8.4058 -5.9653 22 14 8.7315 10.1567 -4.8169 23 1 10.0599 9.4929 -4.8163 24 1 8.6039 11.0077 -6.0271 25 1 8.5992 11.0006 -3.6021 26 6 5.2651 6.8084 -2.4508 27 16 2.3485 2.3347 -1.4057 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8932 -0.5139 0.8901 33 1 2.1447 1.7373 2.0965 34 1 2.9816 4.1060 1.6703 35 1 3.1144 4.4776 -2.9242 36 1 2.3348 7.3649 -1.5338 37 1 3.4768 8.5440 -2.2533 38 1 1.1646 7.0618 -3.6378 39 1 1.5040 8.8238 -3.6316 40 1 3.4520 8.5470 -5.0053 41 1 2.3298 7.3560 -5.7358 42 1 5.7982 5.9044 -5.0913 43 1 5.2743 7.5216 -5.6418 44 1 7.2664 8.7452 -6.8037 45 1 5.2670 7.5094 -1.6162 46 1 5.7930 5.8956 -2.1747 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098927679.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:36 Heat of formation + Delta-G solvation = -4.809072 kcal Electronic energy + Delta-G solvation = -26906.500946 eV Core-core repulsion = 23308.017457 eV Total energy + Delta-G solvation = -3598.483489 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.69914 -39.87597 -38.69265 -36.28290 -34.87078 -34.58303 -33.44520 -31.17451 -30.22533 -29.03375 -26.66029 -26.34700 -25.78915 -23.36910 -23.02048 -22.31053 -21.52689 -20.50813 -19.90834 -19.02913 -18.67643 -17.42334 -16.87886 -16.70489 -16.44350 -16.03058 -15.63299 -15.41551 -15.22907 -15.05059 -14.84702 -14.78762 -14.57795 -14.25599 -13.86633 -13.61098 -13.29854 -13.10225 -12.88299 -12.82263 -12.75284 -12.41164 -12.23895 -12.13500 -12.05619 -12.05137 -11.85932 -11.76178 -11.71626 -11.66566 -11.63446 -11.41620 -10.99880 -10.76453 -10.20471 -9.64614 -9.53349 -8.93937 -7.77581 -5.25802 -0.50977 0.45339 0.89667 1.39444 1.45420 1.47013 1.56046 2.01215 2.18235 2.47968 3.28376 3.38692 3.63910 3.71614 3.78159 3.84883 3.90049 4.15658 4.34543 4.36495 4.39633 4.42350 4.45737 4.49900 4.56846 4.68162 4.78084 4.81229 4.85511 4.90638 4.93813 5.01159 5.06463 5.06910 5.14034 5.20454 5.22105 5.26004 5.36721 5.39579 5.43836 5.45505 5.56949 5.66714 5.80217 6.35837 6.45954 7.07677 7.13971 7.72446 8.39826 9.21168 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.021341 B = 0.002862 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.736288 B = 9781.048407 C =10059.003633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.057 4.057 3 C -0.181 4.181 4 C -0.162 4.162 5 C -0.054 4.054 6 C -0.301 4.301 7 C 0.585 3.415 8 O -0.566 6.566 9 N -0.697 5.697 10 C 0.170 3.830 11 C -0.108 4.108 12 C -0.110 4.110 13 C -0.103 4.103 14 C -0.103 4.103 15 H 0.103 0.897 16 C 0.142 3.858 17 N -0.611 5.611 18 C -0.240 4.240 19 H 0.072 0.928 20 C -0.058 4.058 21 N -0.941 5.941 22 Si 0.981 3.019 23 H -0.287 1.287 24 H -0.286 1.286 25 H -0.275 1.275 26 C 0.144 3.856 27 S 0.230 5.770 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.166 0.834 34 H 0.145 0.855 35 H 0.407 0.593 36 H 0.064 0.936 37 H 0.049 0.951 38 H 0.085 0.915 39 H 0.075 0.925 40 H 0.042 0.958 41 H 0.090 0.910 42 H -0.019 1.019 43 H 0.106 0.894 44 H 0.251 0.749 45 H 0.030 0.970 46 H -0.003 1.003 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.179 -17.925 8.289 26.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.096 4.096 3 C -0.302 4.302 4 C -0.191 4.191 5 C -0.088 4.088 6 C -0.421 4.421 7 C 0.373 3.627 8 O -0.447 6.447 9 N -0.348 5.348 10 C 0.083 3.917 11 C -0.147 4.147 12 C -0.147 4.147 13 C -0.141 4.141 14 C -0.123 4.123 15 H 0.121 0.879 16 C 0.016 3.984 17 N -0.335 5.335 18 C -0.368 4.368 19 H 0.089 0.911 20 C -0.251 4.251 21 N -0.590 5.590 22 Si 0.808 3.192 23 H -0.214 1.214 24 H -0.212 1.212 25 H -0.200 1.200 26 C 0.017 3.983 27 S 0.498 5.502 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.097 0.903 31 H 0.104 0.896 32 H 0.118 0.882 33 H 0.184 0.816 34 H 0.163 0.837 35 H 0.244 0.756 36 H 0.083 0.917 37 H 0.068 0.932 38 H 0.103 0.897 39 H 0.094 0.906 40 H 0.061 0.939 41 H 0.108 0.892 42 H -0.001 1.001 43 H 0.124 0.876 44 H 0.061 0.939 45 H 0.049 0.951 46 H 0.015 0.985 Dipole moment (debyes) X Y Z Total from point charges -16.910 -17.425 7.097 25.297 hybrid contribution 1.423 0.848 1.465 2.211 sum -15.487 -16.578 8.562 24.248 Atomic orbital electron populations 1.21809 0.93327 1.03140 1.02303 1.20320 0.96845 0.87593 1.04868 1.24716 1.05256 1.03032 0.97156 1.20099 1.04952 0.93123 1.00960 1.20925 0.95970 0.97185 0.94752 1.24474 1.18808 0.99563 0.99221 1.17371 0.76831 0.86256 0.82222 1.90806 1.50735 1.44276 1.58837 1.45748 1.67266 1.15681 1.06089 1.21509 0.93115 0.83187 0.93910 1.22553 0.97067 0.96316 0.98758 1.22404 0.96936 1.02399 0.92964 1.22194 0.96321 0.96998 0.98578 1.22957 0.97438 1.00165 0.91751 0.87938 1.21890 0.88157 0.95750 0.92582 1.44671 1.42387 1.44884 1.01589 1.19359 1.11154 1.13217 0.93102 0.91055 1.25543 1.02466 1.02357 0.94734 1.69817 1.45646 1.46757 0.96818 0.85054 0.78539 0.78472 0.77094 1.21399 1.21199 1.19973 1.21511 0.91922 0.94641 0.90230 1.82792 1.59003 1.00934 1.07446 0.92396 0.92845 0.90276 0.89575 0.88213 0.81609 0.83744 0.75626 0.91704 0.93250 0.89687 0.90592 0.93889 0.89179 1.00084 0.87611 0.93923 0.95150 0.98533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.90 71.98 0.71 -0.47 16 2 C -0.06 -0.52 6.36 29.85 0.19 -0.33 16 3 C -0.18 -2.77 5.53 24.68 0.14 -2.63 16 4 C -0.16 -2.76 10.00 21.08 0.21 -2.55 16 5 C -0.05 -1.27 10.01 21.72 0.22 -1.05 16 6 C -0.30 -7.89 6.45 24.08 0.16 -7.74 16 7 C 0.59 19.76 7.09 86.42 0.61 20.37 16 8 O -0.57 -23.53 14.82 -4.36 -0.06 -23.59 16 9 N -0.70 -22.11 5.21 -420.81 -2.19 -24.31 16 10 C 0.17 6.49 0.92 4.96 0.00 6.50 16 11 C -0.11 -3.97 5.52 31.75 0.18 -3.80 16 12 C -0.11 -3.22 6.88 31.70 0.22 -3.00 16 13 C -0.10 -3.46 6.21 31.45 0.20 -3.26 16 14 C -0.10 -3.82 3.65 -9.44 -0.03 -3.85 16 15 H 0.10 3.11 7.71 -2.39 -0.02 3.09 16 16 C 0.14 7.03 5.59 86.51 0.48 7.51 16 17 N -0.61 -33.41 3.39 -695.35 -2.36 -35.77 16 18 C -0.24 -14.12 10.34 84.03 0.87 -13.26 16 19 H 0.07 4.16 7.83 -2.91 -0.02 4.14 16 20 C -0.06 -3.35 5.49 84.86 0.47 -2.88 16 21 N -0.94 -55.51 10.08 21.65 0.22 -55.29 16 22 Si 0.98 46.65 29.55 68.60 2.03 48.68 16 23 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 24 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 25 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 26 C 0.14 7.01 5.30 86.50 0.46 7.47 16 27 S 0.23 4.15 22.10 -56.49 -1.25 2.90 16 28 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.05 0.49 8.14 -2.38 -0.02 0.47 16 30 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 33 H 0.17 1.96 8.06 -2.91 -0.02 1.94 16 34 H 0.14 3.49 8.06 -2.91 -0.02 3.47 16 35 H 0.41 10.36 7.41 -92.71 -0.69 9.67 16 36 H 0.06 2.37 6.65 -2.39 -0.02 2.35 16 37 H 0.05 2.09 7.56 -2.38 -0.02 2.07 16 38 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.04 1.76 7.61 -2.39 -0.02 1.74 16 41 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 42 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 43 H 0.11 5.83 4.93 -2.39 -0.01 5.82 16 44 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 45 H 0.03 1.57 7.55 -2.39 -0.02 1.55 16 46 H 0.00 -0.15 8.08 -2.38 -0.02 -0.17 16 Total: -1.00 -72.20 374.75 1.75 -70.45 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: 0.30 Total: 19.92 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: 5.07 Total: -2.98 kcal Atomic # 7 Polarization: -111.03 SS G_CDS: -4.33 Total: -115.36 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -0.06 Total: -23.59 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Atomic # 16 Polarization: 4.15 SS G_CDS: -1.25 Total: 2.90 kcal Total: -72.20 1.75 -70.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098927679.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.638 kcal (2) G-P(sol) polarization free energy of solvation -72.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds