Wall clock time and date at job start Tue Mar 31 2020 17:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30275 * 126.28675 * 2 1 4 4 N 1.28667 * 109.38237 * 179.73316 * 3 2 1 5 5 C 1.30276 * 109.38060 * 0.43423 * 4 3 2 6 6 C 1.50702 * 126.28222 * 179.82865 * 5 4 3 7 7 N 1.46503 * 109.46822 * 89.69428 * 6 5 4 8 8 N 1.40207 * 126.59516 * 269.95858 * 7 6 5 9 9 N 1.28756 * 108.36951 * 179.78582 * 8 7 6 10 10 C 1.34407 * 109.51856 * 0.40676 * 9 8 7 11 11 C 1.47526 * 125.77016 * 179.85264 * 10 9 8 12 12 O 1.21592 * 120.00264 * 179.68975 * 11 10 9 13 13 N 1.34774 * 119.99808 * 359.69165 * 11 10 9 14 14 C 1.46506 * 120.00072 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47289 * 180.02562 * 14 13 11 16 16 C 1.52996 * 109.47131 * 180.02562 * 15 14 13 17 17 C 1.50703 * 109.47130 * 179.97438 * 16 15 14 18 18 H 1.07994 * 120.00100 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99709 * 179.97438 * 17 16 15 20 20 N 1.31512 * 119.99653 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 120.00192 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47123 * 89.99910 * 21 19 17 23 23 H 1.48506 * 109.46940 * 210.00033 * 21 19 17 24 24 H 1.48501 * 109.47006 * 329.99902 * 21 19 17 25 25 C 1.34807 * 126.59108 * 90.00452 * 7 6 5 26 26 C 1.50706 * 126.58542 * 359.93684 * 25 7 6 27 27 O 1.34359 * 107.43548 * 359.57182 * 5 4 3 28 28 H 1.08994 * 109.47859 * 270.00337 * 1 2 3 29 29 H 1.09007 * 109.47119 * 30.00607 * 1 2 3 30 30 H 1.09002 * 109.47471 * 150.00320 * 1 2 3 31 31 H 1.08998 * 109.46806 * 329.69715 * 6 5 4 32 32 H 1.08992 * 109.47236 * 209.69653 * 6 5 4 33 33 H 0.97001 * 120.00676 * 359.97438 * 13 11 10 34 34 H 1.09001 * 109.47060 * 300.00359 * 14 13 11 35 35 H 1.09004 * 109.47073 * 59.99848 * 14 13 11 36 36 H 1.09001 * 109.46832 * 299.99854 * 15 14 13 37 37 H 1.08996 * 109.46952 * 59.99873 * 15 14 13 38 38 H 1.09001 * 109.46997 * 299.99574 * 16 15 14 39 39 H 1.09004 * 109.47298 * 59.99717 * 16 15 14 40 40 H 0.96997 * 120.00125 * 180.02562 * 20 19 17 41 41 H 1.08997 * 109.47341 * 270.00474 * 26 25 7 42 42 H 1.08999 * 109.46703 * 30.00247 * 26 25 7 43 43 H 1.09001 * 109.47097 * 149.99875 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2779 1.0501 0.0000 4 7 3.5090 0.6760 0.0057 5 6 3.5653 -0.6255 0.0001 6 6 4.8176 -1.4640 0.0002 7 7 5.2233 -1.7356 1.3815 8 7 6.0817 -0.9556 2.1692 9 7 6.1925 -1.5143 3.3239 10 6 5.4572 -2.6391 3.3510 11 6 5.3293 -3.5584 4.4977 12 8 4.6279 -4.5476 4.4086 13 7 5.9899 -3.3017 5.6440 14 6 5.8634 -4.2149 6.7827 15 6 6.7072 -3.6961 7.9487 16 6 6.5756 -4.6501 9.1376 17 6 7.4072 -4.1395 10.2859 18 1 7.9727 -3.2257 10.1787 19 6 7.4452 -4.8384 11.4739 20 7 8.1714 -4.3931 12.4758 21 14 6.4665 -6.4186 11.6596 22 1 7.3039 -7.5716 11.2417 23 1 6.0642 -6.5877 13.0791 24 1 5.2533 -6.3527 10.8057 25 6 4.8437 -2.7839 2.1392 26 6 3.9194 -3.9011 1.7284 27 8 2.3021 -1.0832 0.0001 28 1 -0.3634 0.0001 1.0276 29 1 -0.3634 0.8900 -0.5140 30 1 -0.3634 -0.8900 -0.5138 31 1 5.6146 -0.9266 -0.5136 32 1 4.6244 -2.4056 -0.5136 33 1 6.5498 -2.5127 5.7151 34 1 4.8186 -4.2723 7.0880 35 1 6.2125 -5.2063 6.4938 36 1 7.7521 -3.6384 7.6436 37 1 6.3577 -2.7049 8.2374 38 1 5.5308 -4.7082 9.4428 39 1 6.9253 -5.6412 8.8486 40 1 8.1985 -4.8849 13.3114 41 1 2.8920 -3.6311 1.9726 42 1 4.0058 -4.0679 0.6547 43 1 4.1919 -4.8125 2.2607 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001543154437.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:04 Heat of formation + Delta-G solvation = 91.486505 kcal Electronic energy + Delta-G solvation = -27276.688816 eV Core-core repulsion = 23168.380553 eV Total energy + Delta-G solvation = -4108.308263 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.154 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.95355 -42.66495 -39.32564 -36.88962 -36.12506 -35.59023 -33.69302 -33.25979 -32.66067 -31.48869 -30.15857 -28.51746 -27.54499 -26.99090 -24.02110 -23.86513 -23.27986 -22.50352 -21.34416 -20.78031 -20.09135 -18.52382 -18.20696 -17.65338 -16.90149 -16.84309 -16.31625 -15.75410 -15.62252 -15.47711 -14.95672 -14.62669 -14.36127 -14.08776 -13.94961 -13.83436 -13.58235 -13.51936 -13.48684 -13.07835 -13.05818 -12.68691 -12.53155 -12.28787 -12.02962 -11.91938 -11.69033 -11.55160 -11.06326 -10.93120 -10.87425 -10.35838 -10.28488 -9.99302 -9.80051 -9.64549 -9.52036 -9.20300 -8.86039 -8.53377 -6.03754 -4.02324 0.18050 0.61552 1.33694 1.46607 1.53769 1.89403 2.94293 3.17364 3.20517 3.32444 3.39858 3.43814 3.46852 3.76392 3.78338 4.12203 4.19087 4.32430 4.44720 4.46131 4.57581 4.58261 4.65176 4.79413 4.83113 5.01436 5.12200 5.21657 5.30038 5.34079 5.49958 5.60890 5.66492 5.88022 6.02545 6.32839 6.46744 6.69178 6.80699 7.25142 7.38463 7.44072 7.57741 7.70052 7.78886 8.20025 8.53375 9.00824 9.58218 11.09528 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.022019 B = 0.001880 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.301982 B =14886.621452 C =15061.985373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.181 3.819 3 N -0.288 5.288 4 N -0.243 5.243 5 C 0.122 3.878 6 C 0.231 3.769 7 N -0.377 5.377 8 N -0.046 5.046 9 N -0.192 5.192 10 C -0.097 4.097 11 C 0.600 3.400 12 O -0.541 6.541 13 N -0.707 5.707 14 C 0.115 3.885 15 C -0.115 4.115 16 C -0.010 4.010 17 C -0.522 4.522 18 H 0.072 0.928 19 C 0.066 3.934 20 N -0.903 5.903 21 Si 0.880 3.120 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.264 1.264 25 C 0.128 3.872 26 C -0.097 4.097 27 O -0.219 6.219 28 H 0.104 0.896 29 H 0.111 0.889 30 H 0.097 0.903 31 H 0.156 0.844 32 H 0.137 0.863 33 H 0.408 0.592 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.019 0.981 39 H 0.015 0.985 40 H 0.263 0.737 41 H 0.092 0.908 42 H 0.075 0.925 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.078 4.456 -33.467 36.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.029 4.029 3 N -0.136 5.136 4 N -0.091 5.091 5 C -0.091 4.091 6 C 0.108 3.892 7 N -0.164 5.164 8 N -0.025 5.025 9 N -0.066 5.066 10 C -0.235 4.235 11 C 0.383 3.617 12 O -0.418 6.418 13 N -0.357 5.357 14 C -0.007 4.007 15 C -0.153 4.153 16 C -0.048 4.048 17 C -0.559 4.559 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.542 5.542 21 Si 0.707 3.293 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.189 1.189 25 C -0.008 4.008 26 C -0.156 4.156 27 O -0.097 6.097 28 H 0.123 0.877 29 H 0.129 0.871 30 H 0.116 0.884 31 H 0.173 0.827 32 H 0.154 0.846 33 H 0.244 0.756 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.037 0.963 39 H 0.033 0.967 40 H 0.073 0.927 41 H 0.110 0.890 42 H 0.094 0.906 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -14.291 6.187 -33.268 36.732 hybrid contribution -1.085 -2.237 0.127 2.490 sum -15.376 3.949 -33.141 36.747 Atomic orbital electron populations 1.20487 0.79535 1.06167 1.05862 1.28282 0.98084 0.79302 0.97193 1.74540 0.95717 1.25352 1.17958 1.74471 1.12600 1.08694 1.13317 1.27742 0.85258 0.92054 1.04013 1.19996 0.89092 1.00675 0.79476 1.50254 1.35257 1.18305 1.12620 1.82155 1.09849 1.14141 0.96374 1.74668 1.14645 1.05107 1.12190 1.21367 1.06447 0.98870 0.96790 1.16688 0.80096 0.83635 0.81269 1.90757 1.40556 1.28010 1.82504 1.45982 1.48227 1.28607 1.12837 1.21736 1.01301 0.92775 0.84936 1.21726 0.98793 1.00713 0.94076 1.19502 0.97377 0.94699 0.93263 1.21109 1.28211 1.10629 0.96001 0.90945 1.25039 0.95089 0.97654 0.95772 1.69914 1.40510 1.39765 1.03981 0.86771 0.81237 0.84010 0.77243 1.20264 1.21409 1.18902 1.22014 0.96796 0.91011 0.90968 1.20778 0.97208 0.95377 1.02229 1.84786 1.17099 1.38475 1.69359 0.87728 0.87052 0.88411 0.82672 0.84567 0.75628 0.91467 0.91402 0.91913 0.91924 0.96302 0.96709 0.92725 0.88961 0.90612 0.86401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.13 10.51 36.00 0.38 0.25 16 2 C 0.18 1.27 8.48 -12.94 -0.11 1.16 16 3 N -0.29 -2.98 12.22 32.55 0.40 -2.58 16 4 N -0.24 -2.62 12.22 32.55 0.40 -2.22 16 5 C 0.12 0.95 8.06 -12.94 -0.10 0.84 16 6 C 0.23 1.12 6.92 -5.19 -0.04 1.08 16 7 N -0.38 -3.42 3.62 -58.02 -0.21 -3.63 16 8 N -0.05 -0.58 13.78 60.35 0.83 0.25 16 9 N -0.19 -2.66 12.04 32.85 0.40 -2.26 16 10 C -0.10 -1.27 6.99 -83.55 -0.58 -1.85 16 11 C 0.60 8.92 7.82 -12.48 -0.10 8.82 16 12 O -0.54 -8.84 14.72 5.28 0.08 -8.76 16 13 N -0.71 -10.57 5.55 -61.35 -0.34 -10.91 16 14 C 0.11 1.91 5.67 -4.04 -0.02 1.88 16 15 C -0.12 -2.19 5.27 -26.73 -0.14 -2.33 16 16 C -0.01 -0.25 4.04 -27.88 -0.11 -0.36 16 17 C -0.52 -14.83 9.66 -34.44 -0.33 -15.16 16 18 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 19 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 20 N -0.90 -27.95 13.96 55.43 0.77 -27.18 16 21 Si 0.88 21.76 27.47 -169.99 -4.67 17.09 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.26 -6.27 6.54 56.52 0.37 -5.90 16 25 C 0.13 1.27 7.02 -81.88 -0.57 0.70 16 26 C -0.10 -0.66 9.57 36.01 0.34 -0.32 16 27 O -0.22 -1.55 10.87 5.38 0.06 -1.49 16 28 H 0.10 0.14 8.14 -51.93 -0.42 -0.29 16 29 H 0.11 0.10 8.14 -51.92 -0.42 -0.32 16 30 H 0.10 0.01 8.14 -51.93 -0.42 -0.42 16 31 H 0.16 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.14 0.10 7.16 -51.93 -0.37 -0.27 16 33 H 0.41 5.67 8.16 -40.82 -0.33 5.34 16 34 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 37 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 39 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 40 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 41 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.08 0.25 7.18 -51.93 -0.37 -0.13 16 43 H 0.12 1.01 6.43 -51.93 -0.33 0.67 16 LS Contribution 375.97 15.07 5.67 5.67 Total: -1.00 -37.88 375.97 -3.68 -41.56 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: -5.57 Total: -2.09 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: -1.49 Total: -3.46 kcal Atomic # 7 Polarization: -50.78 SS G_CDS: 2.25 Total: -48.53 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.14 Total: -10.25 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -37.88 -3.68 -41.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001543154437.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.051 kcal (2) G-P(sol) polarization free energy of solvation -37.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds