Wall clock time and date at job start Tue Mar 31 2020 17:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30275 * 126.28675 * 2 1 4 4 N 1.28667 * 109.38237 * 179.73316 * 3 2 1 5 5 C 1.30276 * 109.38060 * 0.43423 * 4 3 2 6 6 C 1.50702 * 126.28222 * 179.82865 * 5 4 3 7 7 N 1.46503 * 109.46822 * 89.69428 * 6 5 4 8 8 N 1.40207 * 126.59516 * 269.95858 * 7 6 5 9 9 N 1.28756 * 108.36951 * 179.78582 * 8 7 6 10 10 C 1.34407 * 109.51856 * 0.40676 * 9 8 7 11 11 C 1.47526 * 125.77016 * 179.85264 * 10 9 8 12 12 O 1.21592 * 120.00264 * 179.68975 * 11 10 9 13 13 N 1.34774 * 119.99808 * 359.69165 * 11 10 9 14 14 C 1.46506 * 120.00072 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47289 * 180.02562 * 14 13 11 16 16 C 1.52996 * 109.47131 * 180.02562 * 15 14 13 17 17 C 1.50703 * 109.47130 * 179.97438 * 16 15 14 18 18 H 1.07994 * 120.00100 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99709 * 179.97438 * 17 16 15 20 20 N 1.31512 * 119.99653 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 120.00192 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47123 * 89.99910 * 21 19 17 23 23 H 1.48506 * 109.46940 * 210.00033 * 21 19 17 24 24 H 1.48501 * 109.47006 * 329.99902 * 21 19 17 25 25 C 1.34807 * 126.59108 * 90.00452 * 7 6 5 26 26 C 1.50706 * 126.58542 * 359.93684 * 25 7 6 27 27 O 1.34359 * 107.43548 * 359.57182 * 5 4 3 28 28 H 1.08994 * 109.47859 * 270.00337 * 1 2 3 29 29 H 1.09007 * 109.47119 * 30.00607 * 1 2 3 30 30 H 1.09002 * 109.47471 * 150.00320 * 1 2 3 31 31 H 1.08998 * 109.46806 * 329.69715 * 6 5 4 32 32 H 1.08992 * 109.47236 * 209.69653 * 6 5 4 33 33 H 0.97001 * 120.00676 * 359.97438 * 13 11 10 34 34 H 1.09001 * 109.47060 * 300.00359 * 14 13 11 35 35 H 1.09004 * 109.47073 * 59.99848 * 14 13 11 36 36 H 1.09001 * 109.46832 * 299.99854 * 15 14 13 37 37 H 1.08996 * 109.46952 * 59.99873 * 15 14 13 38 38 H 1.09001 * 109.46997 * 299.99574 * 16 15 14 39 39 H 1.09004 * 109.47298 * 59.99717 * 16 15 14 40 40 H 0.96997 * 120.00125 * 180.02562 * 20 19 17 41 41 H 1.08997 * 109.47341 * 270.00474 * 26 25 7 42 42 H 1.08999 * 109.46703 * 30.00247 * 26 25 7 43 43 H 1.09001 * 109.47097 * 149.99875 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2779 1.0501 0.0000 4 7 3.5090 0.6760 0.0057 5 6 3.5653 -0.6255 0.0001 6 6 4.8176 -1.4640 0.0002 7 7 5.2233 -1.7356 1.3815 8 7 6.0817 -0.9556 2.1692 9 7 6.1925 -1.5143 3.3239 10 6 5.4572 -2.6391 3.3510 11 6 5.3293 -3.5584 4.4977 12 8 4.6279 -4.5476 4.4086 13 7 5.9899 -3.3017 5.6440 14 6 5.8634 -4.2149 6.7827 15 6 6.7072 -3.6961 7.9487 16 6 6.5756 -4.6501 9.1376 17 6 7.4072 -4.1395 10.2859 18 1 7.9727 -3.2257 10.1787 19 6 7.4452 -4.8384 11.4739 20 7 8.1714 -4.3931 12.4758 21 14 6.4665 -6.4186 11.6596 22 1 7.3039 -7.5716 11.2417 23 1 6.0642 -6.5877 13.0791 24 1 5.2533 -6.3527 10.8057 25 6 4.8437 -2.7839 2.1392 26 6 3.9194 -3.9011 1.7284 27 8 2.3021 -1.0832 0.0001 28 1 -0.3634 0.0001 1.0276 29 1 -0.3634 0.8900 -0.5140 30 1 -0.3634 -0.8900 -0.5138 31 1 5.6146 -0.9266 -0.5136 32 1 4.6244 -2.4056 -0.5136 33 1 6.5498 -2.5127 5.7151 34 1 4.8186 -4.2723 7.0880 35 1 6.2125 -5.2063 6.4938 36 1 7.7521 -3.6384 7.6436 37 1 6.3577 -2.7049 8.2374 38 1 5.5308 -4.7082 9.4428 39 1 6.9253 -5.6412 8.8486 40 1 8.1985 -4.8849 13.3114 41 1 2.8920 -3.6311 1.9726 42 1 4.0058 -4.0679 0.6547 43 1 4.1919 -4.8125 2.2607 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001543154437.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:03 Heat of formation + Delta-G solvation = 58.121656 kcal Electronic energy + Delta-G solvation = -27278.135624 eV Core-core repulsion = 23168.380553 eV Total energy + Delta-G solvation = -4109.755071 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.154 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.50664 -43.50248 -40.48770 -37.46586 -37.05922 -36.76155 -35.16244 -34.19637 -33.47409 -33.14146 -30.76417 -29.50688 -28.44030 -28.05418 -25.33479 -24.50451 -24.00875 -23.60806 -22.24920 -22.09488 -21.37771 -19.40066 -18.94105 -18.77156 -18.28843 -17.59611 -17.21852 -16.97548 -16.70598 -16.23226 -15.97896 -15.81737 -15.40509 -15.09888 -15.05060 -14.76270 -14.47580 -14.09919 -14.06114 -13.79997 -13.68253 -13.66193 -13.60320 -13.47652 -13.14665 -13.09688 -12.73823 -12.68799 -12.37396 -12.22096 -11.93582 -11.77671 -11.67435 -11.58889 -11.32653 -11.15292 -10.87270 -10.74884 -10.44826 -10.04783 -8.27829 -6.32320 -0.39222 -0.10146 0.47899 0.75047 1.04200 1.29042 1.38770 1.40442 1.52663 2.07756 2.12619 2.38231 2.52766 3.00338 3.07644 3.08479 3.32376 3.42120 3.59836 3.74297 3.85472 4.06781 4.14547 4.21012 4.22865 4.24063 4.48218 4.50092 4.51551 4.55370 4.64247 4.71177 4.85356 4.89852 4.93707 4.98958 5.03501 5.25360 5.37020 5.49230 5.56825 5.66206 6.28901 6.36125 6.73709 6.75925 7.00904 7.05660 7.32202 8.88814 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.022019 B = 0.001880 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.301982 B =14886.621452 C =15061.985373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.190 3.810 3 N -0.335 5.335 4 N -0.286 5.286 5 C 0.127 3.873 6 C 0.222 3.778 7 N -0.364 5.364 8 N -0.071 5.071 9 N -0.216 5.216 10 C -0.127 4.127 11 C 0.602 3.398 12 O -0.557 6.557 13 N -0.708 5.708 14 C 0.129 3.871 15 C -0.104 4.104 16 C -0.010 4.010 17 C -0.533 4.533 18 H 0.033 0.967 19 C 0.001 3.999 20 N -0.952 5.952 21 Si 0.952 3.048 22 H -0.266 1.266 23 H -0.286 1.286 24 H -0.244 1.244 25 C 0.147 3.853 26 C -0.096 4.096 27 O -0.216 6.216 28 H 0.115 0.885 29 H 0.122 0.878 30 H 0.124 0.876 31 H 0.175 0.825 32 H 0.188 0.812 33 H 0.412 0.588 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.024 0.976 39 H 0.025 0.975 40 H 0.266 0.734 41 H 0.101 0.899 42 H 0.120 0.880 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.421 2.366 -36.197 40.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.020 4.020 3 N -0.182 5.182 4 N -0.133 5.133 5 C -0.086 4.086 6 C 0.101 3.899 7 N -0.151 5.151 8 N -0.050 5.050 9 N -0.090 5.090 10 C -0.265 4.265 11 C 0.386 3.614 12 O -0.436 6.436 13 N -0.358 5.358 14 C 0.006 3.994 15 C -0.142 4.142 16 C -0.048 4.048 17 C -0.571 4.571 18 H 0.051 0.949 19 C -0.196 4.196 20 N -0.593 5.593 21 Si 0.775 3.225 22 H -0.191 1.191 23 H -0.211 1.211 24 H -0.167 1.167 25 C 0.010 3.990 26 C -0.155 4.155 27 O -0.094 6.094 28 H 0.133 0.867 29 H 0.140 0.860 30 H 0.142 0.858 31 H 0.192 0.808 32 H 0.205 0.795 33 H 0.248 0.752 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.043 0.957 39 H 0.043 0.957 40 H 0.075 0.925 41 H 0.119 0.881 42 H 0.139 0.861 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -16.632 4.147 -36.045 39.913 hybrid contribution -0.381 -1.499 0.888 1.783 sum -17.013 2.648 -35.157 39.147 Atomic orbital electron populations 1.20826 0.76272 1.07976 1.06985 1.29206 0.99499 0.78595 0.94673 1.74465 0.96144 1.27168 1.20410 1.74380 1.13356 1.10537 1.15048 1.28145 0.86185 0.91587 1.02715 1.20727 0.88487 1.03179 0.77471 1.50421 1.33872 1.17238 1.13592 1.82063 1.11313 1.15068 0.96559 1.74636 1.15531 1.05691 1.13131 1.21279 1.08522 0.99188 0.97561 1.16863 0.79433 0.83636 0.81425 1.90740 1.41207 1.28753 1.82896 1.45886 1.48671 1.28571 1.12710 1.21418 1.00529 0.92936 0.84515 1.21508 0.99390 0.99632 0.93686 1.19453 0.96468 0.95845 0.93006 1.21485 1.28253 1.09383 0.97998 0.94896 1.26059 0.96353 1.01820 0.95325 1.70074 1.42588 1.41804 1.04804 0.85631 0.80259 0.79025 0.77587 1.19081 1.21141 1.16712 1.22452 0.95477 0.91268 0.89783 1.20939 0.96468 0.93143 1.04904 1.84808 1.16876 1.38337 1.69428 0.86662 0.86005 0.85799 0.80809 0.79465 0.75186 0.91465 0.91134 0.92038 0.92250 0.95725 0.95712 0.92534 0.88114 0.86141 0.87923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.10 10.51 71.23 0.75 0.65 16 2 C 0.19 2.36 8.48 88.34 0.75 3.11 16 3 N -0.33 -6.83 12.22 -165.50 -2.02 -8.85 16 4 N -0.29 -6.05 12.22 -165.50 -2.02 -8.07 16 5 C 0.13 1.73 8.06 88.34 0.71 2.44 16 6 C 0.22 1.45 6.92 85.63 0.59 2.04 16 7 N -0.36 -5.82 3.62 -337.48 -1.22 -7.04 16 8 N -0.07 -1.74 13.78 37.02 0.51 -1.23 16 9 N -0.22 -5.98 12.04 -49.99 -0.60 -6.58 16 10 C -0.13 -3.23 6.99 40.82 0.29 -2.94 16 11 C 0.60 17.44 7.82 86.69 0.68 18.11 16 12 O -0.56 -17.50 14.72 -4.01 -0.06 -17.56 16 13 N -0.71 -20.86 5.55 -466.26 -2.59 -23.45 16 14 C 0.13 4.14 5.67 86.38 0.49 4.63 16 15 C -0.10 -3.94 5.27 30.59 0.16 -3.78 16 16 C -0.01 -0.45 4.04 29.85 0.12 -0.33 16 17 C -0.53 -30.90 9.66 25.60 0.25 -30.65 16 18 H 0.03 2.09 7.99 -2.91 -0.02 2.07 16 19 C 0.00 0.06 5.47 84.66 0.46 0.52 16 20 N -0.95 -60.38 13.96 21.45 0.30 -60.08 16 21 Si 0.95 44.42 27.47 68.60 1.88 46.30 16 22 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 23 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 24 H -0.24 -10.48 6.54 99.48 0.65 -9.83 16 25 C 0.15 2.60 7.02 41.72 0.29 2.90 16 26 C -0.10 -0.97 9.57 71.24 0.68 -0.29 16 27 O -0.22 -2.51 10.87 -3.67 -0.04 -2.55 16 28 H 0.12 0.01 8.14 -2.39 -0.02 -0.01 16 29 H 0.12 -0.04 8.14 -2.38 -0.02 -0.06 16 30 H 0.12 -0.43 8.14 -2.39 -0.02 -0.45 16 31 H 0.17 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.19 -0.74 7.16 -2.39 -0.02 -0.76 16 33 H 0.41 11.51 8.16 -92.71 -0.76 10.75 16 34 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 36 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 37 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.02 1.11 7.20 -2.39 -0.02 1.09 16 39 H 0.02 1.09 7.57 -2.38 -0.02 1.08 16 40 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 41 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.12 0.12 7.18 -2.39 -0.02 0.10 16 43 H 0.10 1.48 6.43 -2.39 -0.02 1.46 16 Total: -1.00 -86.20 375.97 0.62 -85.58 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: 0.25 Total: 7.12 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: 6.22 Total: -3.58 kcal Atomic # 7 Polarization: -107.66 SS G_CDS: -7.65 Total: -115.31 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: -0.10 Total: -20.11 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.88 Total: 46.30 kcal Total: -86.20 0.62 -85.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001543154437.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.702 kcal (2) G-P(sol) polarization free energy of solvation -86.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds