Wall clock time and date at job start Tue Mar 31 2020 18:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47162 * 2 1 4 4 C 1.50707 * 109.46933 * 119.99832 * 2 1 3 5 5 O 1.21281 * 119.99529 * 120.00300 * 4 2 1 6 6 N 1.34773 * 119.99757 * 300.00116 * 4 2 1 7 7 C 1.47680 * 134.45049 * 180.02562 * 6 4 2 8 8 C 1.53438 * 85.96991 * 155.71093 * 7 6 4 9 9 C 1.47672 * 134.45707 * 0.02562 * 6 4 2 10 10 C 1.52632 * 113.71715 * 268.84963 * 8 7 6 11 11 C 1.53186 * 109.35419 * 171.27854 * 10 8 7 12 12 C 1.52667 * 109.42930 * 58.93080 * 11 10 8 13 13 N 1.46904 * 109.34156 * 303.76656 * 12 11 10 14 14 C 1.36944 * 120.68850 * 235.30814 * 13 12 11 15 15 H 1.08000 * 119.99474 * 28.83342 * 14 13 12 16 16 C 1.38809 * 119.99889 * 208.82345 * 14 13 12 17 17 N 1.31620 * 119.99822 * 14.05359 * 16 14 13 18 18 Si 1.86800 * 119.99668 * 194.04383 * 16 14 13 19 19 H 1.48495 * 109.46804 * 84.99676 * 18 16 14 20 20 H 1.48499 * 109.46829 * 204.99229 * 18 16 14 21 21 H 1.48490 * 109.47270 * 324.99190 * 18 16 14 22 22 C 1.47111 * 118.61926 * 55.04632 * 13 12 11 23 23 C 1.50696 * 109.47563 * 239.99845 * 2 1 3 24 24 C 1.33392 * 125.20666 * 119.71921 * 23 2 1 25 25 C 1.38420 * 114.92307 * 179.86219 * 24 23 2 26 26 C 1.33383 * 114.92159 * 0.43172 * 25 24 23 27 27 S 1.75888 * 125.20172 * 300.02751 * 23 2 1 28 28 H 1.08998 * 109.46799 * 60.00400 * 1 2 3 29 29 H 1.09004 * 109.46704 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47369 * 299.99970 * 1 2 3 31 31 H 1.08997 * 113.78903 * 41.44722 * 7 6 4 32 32 H 1.08995 * 113.79129 * 269.97683 * 7 6 4 33 33 H 1.08994 * 113.79456 * 90.02458 * 9 6 4 34 34 H 1.09000 * 113.79132 * 318.54455 * 9 6 4 35 35 H 1.08998 * 109.49222 * 291.24039 * 10 8 7 36 36 H 1.08996 * 109.49206 * 51.31299 * 10 8 7 37 37 H 1.08998 * 109.48673 * 179.02651 * 11 10 8 38 38 H 1.09000 * 109.49084 * 299.09608 * 11 10 8 39 39 H 1.08995 * 109.44201 * 183.78776 * 12 11 10 40 40 H 1.08993 * 109.37034 * 63.70886 * 12 11 10 41 41 H 0.97006 * 119.99739 * 180.02562 * 17 16 14 42 42 H 1.09002 * 109.64140 * 68.57470 * 22 13 12 43 43 H 1.09004 * 109.63639 * 189.18638 * 22 13 12 44 44 H 1.08007 * 122.53371 * 0.02562 * 24 23 2 45 45 H 1.08003 * 122.53770 * 180.19943 * 25 24 23 46 46 H 1.08001 * 125.20564 * 179.75579 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 8 2.7296 -1.6965 1.1192 6 7 1.7066 -0.2499 2.4546 7 6 2.0099 -0.6780 3.8351 8 6 1.7484 0.7815 4.2298 9 6 0.9036 0.8849 2.9528 10 6 2.9990 1.6563 4.2101 11 6 2.5965 3.1217 4.4031 12 6 1.8598 3.2753 5.7314 13 7 0.7070 2.3651 5.7565 14 6 -0.5546 2.8415 5.9946 15 1 -0.8120 3.8522 5.7141 16 6 -1.5026 2.0253 6.5961 17 7 -1.1309 0.9084 7.1850 18 14 -3.3059 2.5122 6.5700 19 1 -3.9241 2.0534 5.3002 20 1 -4.0057 1.8809 7.7176 21 1 -3.4213 3.9891 6.6715 22 6 0.9353 0.9320 5.5147 23 6 2.0324 -0.7104 -1.2304 24 6 2.7982 -0.1631 -2.1756 25 6 3.1393 -1.0123 -3.2141 26 6 2.6431 -2.2466 -3.1170 27 16 1.6924 -2.3859 -1.6437 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 3.0427 -0.9945 3.9803 32 1 1.2859 -1.3813 4.2464 33 1 -0.1494 0.6466 3.1017 34 1 1.0577 1.8100 2.3973 35 1 3.6673 1.3536 5.0162 36 1 3.5078 1.5419 3.2530 37 1 3.4896 3.7466 4.4067 38 1 1.9405 3.4290 3.5887 39 1 1.5146 4.3036 5.8380 40 1 2.5359 3.0298 6.5503 41 1 -1.7935 0.3378 7.6051 42 1 1.4881 0.5030 6.3504 43 1 -0.0218 0.4221 5.4044 44 1 3.1293 0.8640 -2.1323 45 1 3.7572 -0.6981 -4.0423 46 1 2.8007 -3.0392 -3.8335 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000982008564.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:59 Heat of formation + Delta-G solvation = 52.560704 kcal Electronic energy + Delta-G solvation = -27206.805872 eV Core-core repulsion = 23610.810123 eV Total energy + Delta-G solvation = -3595.995749 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.57811 -38.73466 -37.51599 -35.78005 -33.96619 -32.89081 -30.34728 -30.01124 -28.60127 -26.11448 -25.95566 -25.41027 -24.62389 -22.81542 -22.30925 -20.65375 -19.43423 -19.11365 -17.88709 -17.12328 -16.81729 -16.64199 -15.68989 -15.53555 -15.25949 -14.69170 -14.20124 -14.04064 -13.69544 -13.53759 -13.40129 -13.09911 -12.90490 -12.80426 -12.76158 -12.42868 -12.29952 -12.11695 -11.91073 -11.74873 -11.63383 -11.53937 -11.19425 -11.00258 -10.81919 -10.65991 -10.51798 -10.33108 -10.20592 -9.97667 -9.77356 -9.53986 -9.38362 -8.69777 -8.56108 -8.40925 -8.35571 -6.72227 -5.86172 -3.30237 0.95678 1.64051 2.03756 2.65476 2.78361 3.13089 3.32287 3.40012 3.40751 4.41391 4.44608 4.50648 4.77738 4.93096 4.98791 5.08666 5.21322 5.32675 5.36727 5.42489 5.47064 5.52314 5.57505 5.64756 5.69722 5.75604 5.81548 5.88993 5.93420 5.98259 6.04102 6.04883 6.11835 6.20179 6.24636 6.34925 6.41923 6.48368 6.57999 6.70636 6.80317 6.93897 7.19833 7.51244 7.72761 7.97113 8.33022 8.37294 9.13941 9.76296 10.34192 11.22558 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.017586 B = 0.003090 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.783140 B = 9059.269036 C = 9676.730634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.037 4.037 3 H 0.110 0.890 4 C 0.533 3.467 5 O -0.541 6.541 6 N -0.637 5.637 7 C 0.117 3.883 8 C -0.112 4.112 9 C 0.121 3.879 10 C -0.083 4.083 11 C -0.133 4.133 12 C 0.144 3.856 13 N -0.590 5.590 14 C -0.252 4.252 15 H 0.066 0.934 16 C 0.004 3.996 17 N -0.904 5.904 18 Si 0.901 3.099 19 H -0.287 1.287 20 H -0.291 1.291 21 H -0.280 1.280 22 C 0.191 3.809 23 C -0.150 4.150 24 C -0.144 4.144 25 C -0.136 4.136 26 C -0.229 4.229 27 S 0.138 5.862 28 H 0.071 0.929 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.047 0.953 37 H 0.051 0.949 38 H 0.057 0.943 39 H 0.053 0.947 40 H 0.018 0.982 41 H 0.255 0.745 42 H 0.025 0.975 43 H 0.090 0.910 44 H 0.137 0.863 45 H 0.136 0.864 46 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.032 -1.790 -16.190 17.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.060 4.060 3 H 0.128 0.872 4 C 0.321 3.679 5 O -0.418 6.418 6 N -0.372 5.372 7 C -0.005 4.005 8 C -0.114 4.114 9 C -0.001 4.001 10 C -0.120 4.120 11 C -0.172 4.172 12 C 0.018 3.982 13 N -0.312 5.312 14 C -0.381 4.381 15 H 0.083 0.917 16 C -0.194 4.194 17 N -0.548 5.548 18 Si 0.731 3.269 19 H -0.214 1.214 20 H -0.217 1.217 21 H -0.205 1.205 22 C 0.065 3.935 23 C -0.268 4.268 24 C -0.174 4.174 25 C -0.167 4.167 26 C -0.365 4.365 27 S 0.403 5.597 28 H 0.090 0.910 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.104 0.896 33 H 0.108 0.892 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.036 0.964 41 H 0.065 0.935 42 H 0.043 0.957 43 H 0.108 0.892 44 H 0.154 0.846 45 H 0.154 0.846 46 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 5.505 -3.675 -15.665 17.006 hybrid contribution -0.078 1.306 -0.711 1.488 sum 5.427 -2.369 -16.375 17.413 Atomic orbital electron populations 1.21880 0.91659 1.03123 1.03631 1.19741 0.97703 0.99754 0.88783 0.87200 1.20027 0.80640 0.84052 0.83193 1.90707 1.38789 1.26392 1.85960 1.50203 1.51309 1.31303 1.04378 1.23232 1.01373 0.97569 0.78357 1.22828 0.96939 0.93167 0.98472 1.23300 0.96216 0.88056 0.92522 1.21093 0.95351 0.95168 1.00435 1.21940 0.99356 0.95265 1.00683 1.20796 0.89690 0.94548 0.93168 1.44002 1.02568 1.02531 1.82144 1.19160 0.86893 0.99027 1.33032 0.91668 1.25075 0.98786 0.98202 0.97369 1.69984 1.32627 1.14318 1.37890 0.86324 0.85262 0.78069 0.77202 1.21377 1.21740 1.20504 1.20684 0.97898 0.85933 0.89010 1.23970 1.05337 0.97554 0.99970 1.20049 1.00936 1.01495 0.94924 1.20046 1.03050 0.93165 1.00398 1.25678 1.06766 1.01524 1.02490 1.84312 1.49733 1.09830 1.15811 0.91045 0.92036 0.90642 0.90711 0.89563 0.89170 0.90635 0.92100 0.93378 0.92995 0.92437 0.92850 0.96448 0.93523 0.95661 0.89151 0.84559 0.84615 0.82212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 8.99 37.16 0.33 -1.31 16 2 C -0.04 -0.47 2.93 -92.92 -0.27 -0.74 16 3 H 0.11 1.24 8.08 -51.93 -0.42 0.82 16 4 C 0.53 8.53 7.35 -10.98 -0.08 8.44 16 5 O -0.54 -10.35 15.98 5.56 0.09 -10.26 16 6 N -0.64 -9.91 3.41 -180.48 -0.62 -10.52 16 7 C 0.12 1.87 7.97 -3.18 -0.03 1.84 16 8 C -0.11 -1.86 0.87 -154.43 -0.13 -1.99 16 9 C 0.12 1.86 5.86 -3.17 -0.02 1.84 16 10 C -0.08 -1.28 5.02 -26.82 -0.13 -1.42 16 11 C -0.13 -2.09 5.99 -26.81 -0.16 -2.25 16 12 C 0.14 2.77 6.43 -3.99 -0.03 2.74 16 13 N -0.59 -13.35 3.01 -172.75 -0.52 -13.87 16 14 C -0.25 -6.34 9.59 -15.06 -0.14 -6.48 16 15 H 0.07 1.63 7.87 -52.49 -0.41 1.22 16 16 C 0.00 0.11 4.98 -17.43 -0.09 0.03 16 17 N -0.90 -24.54 11.14 55.49 0.62 -23.92 16 18 Si 0.90 20.49 29.58 -169.99 -5.03 15.46 16 19 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 22 C 0.19 4.04 4.40 -3.81 -0.02 4.02 16 23 C -0.15 -1.95 4.60 -36.00 -0.17 -2.12 16 24 C -0.14 -1.67 10.01 -41.21 -0.41 -2.08 16 25 C -0.14 -1.44 10.18 -41.21 -0.42 -1.86 16 26 C -0.23 -2.47 11.23 29.04 0.33 -2.14 16 27 S 0.14 1.77 22.18 -107.50 -2.38 -0.62 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.73 8.00 -51.93 -0.42 0.32 16 30 H 0.07 0.86 6.12 -51.93 -0.32 0.54 16 31 H 0.07 1.17 8.09 -51.93 -0.42 0.75 16 32 H 0.09 1.38 8.09 -51.93 -0.42 0.96 16 33 H 0.09 1.46 7.79 -51.93 -0.40 1.06 16 34 H 0.08 1.07 7.37 -51.93 -0.38 0.69 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.05 0.72 8.02 -51.93 -0.42 0.30 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.91 7.37 -51.93 -0.38 0.52 16 39 H 0.05 1.01 7.93 -51.93 -0.41 0.60 16 40 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 42 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.09 2.14 6.02 -51.93 -0.31 1.83 16 44 H 0.14 1.32 8.06 -52.48 -0.42 0.90 16 45 H 0.14 1.10 8.06 -52.48 -0.42 0.68 16 46 H 0.16 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 376.96 15.07 5.68 5.68 Total: -1.00 -29.35 376.96 -10.83 -40.18 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -7.23 Total: 1.34 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: -1.44 Total: -3.47 kcal Atomic # 7 Polarization: -47.80 SS G_CDS: -0.52 Total: -48.31 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.09 Total: -10.26 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.03 Total: 15.46 kcal Atomic # 16 Polarization: 1.77 SS G_CDS: -2.38 Total: -0.62 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -29.35 -10.83 -40.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982008564.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.744 kcal (2) G-P(sol) polarization free energy of solvation -29.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds