Wall clock time and date at job start Tue Mar 31 2020 18:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47082 * 2 1 4 4 C 1.50700 * 109.46710 * 119.99846 * 2 1 3 5 5 O 1.21280 * 119.99884 * 111.31950 * 4 2 1 6 6 N 1.34771 * 120.00290 * 291.32127 * 4 2 1 7 7 C 1.46946 * 120.44490 * 184.99440 * 6 4 2 8 8 C 1.54062 * 108.29570 * 125.71126 * 7 6 4 9 9 H 1.09000 * 110.52517 * 172.27892 * 8 7 6 10 10 C 1.53376 * 108.83167 * 294.52404 * 8 7 6 11 11 C 1.53018 * 109.25303 * 60.26218 * 10 8 7 12 12 C 1.53007 * 109.79289 * 60.58410 * 11 10 8 13 13 C 1.53370 * 109.26955 * 299.42777 * 12 11 10 14 14 H 1.08999 * 111.08626 * 177.80728 * 13 12 11 15 15 C 1.46943 * 120.44305 * 5.26301 * 6 4 2 16 16 N 1.47567 * 107.70214 * 51.34777 * 8 7 6 17 17 C 1.36936 * 121.61203 * 120.38998 * 16 8 7 18 18 H 1.08002 * 119.99945 * 204.60882 * 17 16 8 19 19 C 1.38811 * 120.00302 * 24.60695 * 17 16 8 20 20 N 1.31623 * 119.99819 * 18.78834 * 19 17 16 21 21 Si 1.86799 * 120.00221 * 198.79455 * 19 17 16 22 22 H 1.48496 * 109.47286 * 59.99623 * 21 19 17 23 23 H 1.48497 * 109.46981 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46707 * 299.99659 * 21 19 17 25 25 C 1.50695 * 109.47004 * 239.99677 * 2 1 3 26 26 C 1.33389 * 125.19933 * 120.00540 * 25 2 1 27 27 C 1.38429 * 114.92210 * 179.97438 * 26 25 2 28 28 C 1.33391 * 114.91521 * 0.02562 * 27 26 25 29 29 S 1.75880 * 109.59835 * 359.75211 * 28 27 26 30 30 H 1.08999 * 109.47134 * 307.45530 * 1 2 3 31 31 H 1.08999 * 109.46498 * 67.45141 * 1 2 3 32 32 H 1.08998 * 109.47241 * 187.45252 * 1 2 3 33 33 H 1.09003 * 109.62899 * 245.47463 * 7 6 4 34 34 H 1.08996 * 109.62525 * 6.03854 * 7 6 4 35 35 H 1.08995 * 109.50857 * 180.20122 * 10 8 7 36 36 H 1.09003 * 109.50371 * 300.28674 * 10 8 7 37 37 H 1.08998 * 109.40967 * 180.67907 * 11 10 8 38 38 H 1.09000 * 109.41559 * 300.54563 * 11 10 8 39 39 H 1.09001 * 109.50087 * 179.48850 * 12 11 10 40 40 H 1.08998 * 109.50933 * 59.36508 * 12 11 10 41 41 H 1.09000 * 109.62575 * 353.97211 * 15 6 4 42 42 H 1.09007 * 109.62526 * 114.53900 * 15 6 4 43 43 H 0.96994 * 120.00096 * 180.02562 * 20 19 17 44 44 H 1.07995 * 122.54334 * 359.95497 * 26 25 2 45 45 H 1.07996 * 122.54053 * 179.97438 * 27 26 25 46 46 H 1.08008 * 125.19963 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.5944 -1.7800 1.1262 6 7 1.8568 -0.1572 2.4469 7 6 2.4372 -0.7858 3.6415 8 6 3.2927 0.2655 4.3739 9 1 3.6306 -0.1196 5.3360 10 6 4.4822 0.6440 3.4826 11 6 3.9615 1.2285 2.1678 12 6 3.1335 2.4837 2.4506 13 6 1.9390 2.1127 3.3381 14 1 1.3491 2.9939 3.5902 15 6 1.0774 1.0795 2.5969 16 7 2.4611 1.4703 4.5597 17 6 2.1875 1.9684 5.8056 18 1 1.3027 2.5667 5.9656 19 6 3.0473 1.7044 6.8629 20 7 4.2807 1.3108 6.6256 21 14 2.4539 1.9075 8.6225 22 1 1.3008 1.0034 8.8635 23 1 3.5547 1.5653 9.5586 24 1 2.0344 3.3147 8.8440 25 6 2.0323 -0.7105 -1.2304 26 6 2.8025 -0.1647 -2.1728 27 6 3.1405 -1.0128 -3.2134 28 6 2.6443 -2.2472 -3.1160 29 16 1.6983 -2.3880 -1.6400 30 1 -0.3633 0.6250 0.8158 31 1 -0.3632 0.3941 -0.9491 32 1 -0.3633 -1.0190 0.1333 33 1 1.6387 -1.1334 4.2970 34 1 3.0633 -1.6273 3.3448 35 1 5.0974 1.3855 3.9923 36 1 5.0791 -0.2442 3.2758 37 1 4.8047 1.4873 1.5274 38 1 3.3377 0.4896 1.6647 39 1 2.7727 2.9010 1.5105 40 1 3.7524 3.2203 2.9628 41 1 0.8090 1.4647 1.6132 42 1 0.1743 0.8755 3.1722 43 1 4.8814 1.1260 7.3644 44 1 3.1368 0.8612 -2.1277 45 1 3.7584 -0.6987 -4.0415 46 1 2.8032 -3.0402 -3.8318 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039909607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:24 Heat of formation + Delta-G solvation = 55.703707 kcal Electronic energy + Delta-G solvation = -28606.838992 eV Core-core repulsion = 25010.979534 eV Total energy + Delta-G solvation = -3595.859458 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.84922 -38.25631 -37.34297 -34.43381 -33.57015 -32.74325 -31.72488 -30.36702 -28.60038 -27.01702 -25.58854 -24.81296 -23.75392 -22.73651 -21.48185 -21.23293 -19.55631 -19.25869 -18.34559 -17.22162 -16.87158 -16.13225 -15.49082 -15.33943 -14.83775 -14.71238 -14.10775 -13.76689 -13.71939 -13.51847 -13.22900 -12.95411 -12.83540 -12.68691 -12.45227 -12.24304 -12.20887 -12.02317 -11.89655 -11.55277 -11.45411 -11.32587 -11.17199 -10.88065 -10.70547 -10.56803 -10.35926 -10.20575 -10.01479 -9.98067 -9.64321 -9.45479 -9.25883 -8.60823 -8.52800 -8.26280 -7.87479 -6.67690 -5.84313 -3.26519 1.05230 1.74361 2.14390 2.75732 2.92640 3.34342 3.40846 3.41592 3.46116 4.41532 4.51068 4.69775 5.00171 5.05051 5.08416 5.23121 5.28869 5.47199 5.53443 5.57057 5.62955 5.64921 5.69258 5.71448 5.81980 5.87400 5.97174 6.05645 6.12285 6.16020 6.29759 6.32286 6.43322 6.45006 6.49585 6.51668 6.57520 6.73081 6.87354 6.90576 7.05088 7.12585 7.49567 7.60631 7.71292 7.88376 8.32726 8.51391 9.10044 9.72902 10.32478 11.21461 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.026515 B = 0.003471 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.737306 B = 8064.671040 C = 8103.751259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.045 4.045 3 H 0.111 0.889 4 C 0.516 3.484 5 O -0.541 6.541 6 N -0.586 5.586 7 C 0.093 3.907 8 C 0.174 3.826 9 H 0.123 0.877 10 C -0.111 4.111 11 C -0.140 4.140 12 C -0.123 4.123 13 C 0.150 3.850 14 H 0.078 0.922 15 C 0.087 3.913 16 N -0.579 5.579 17 C -0.250 4.250 18 H 0.068 0.932 19 C 0.002 3.998 20 N -0.897 5.897 21 Si 0.903 3.097 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.284 1.284 25 C -0.151 4.151 26 C -0.144 4.144 27 C -0.136 4.136 28 C -0.233 4.233 29 S 0.145 5.855 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.036 0.964 37 H 0.030 0.970 38 H 0.078 0.922 39 H 0.039 0.961 40 H 0.059 0.941 41 H 0.078 0.922 42 H 0.067 0.933 43 H 0.255 0.745 44 H 0.136 0.864 45 H 0.135 0.865 46 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.170 -2.293 -16.374 17.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.068 4.068 3 H 0.129 0.871 4 C 0.304 3.696 5 O -0.419 6.419 6 N -0.318 5.318 7 C -0.031 4.031 8 C 0.067 3.933 9 H 0.140 0.860 10 C -0.150 4.150 11 C -0.178 4.178 12 C -0.163 4.163 13 C 0.042 3.958 14 H 0.096 0.904 15 C -0.037 4.037 16 N -0.299 5.299 17 C -0.379 4.379 18 H 0.086 0.914 19 C -0.196 4.196 20 N -0.541 5.541 21 Si 0.733 3.267 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.210 1.210 25 C -0.269 4.269 26 C -0.174 4.174 27 C -0.167 4.167 28 C -0.369 4.369 29 S 0.410 5.590 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.098 0.902 35 H 0.089 0.911 36 H 0.055 0.945 37 H 0.049 0.951 38 H 0.096 0.904 39 H 0.058 0.942 40 H 0.078 0.922 41 H 0.096 0.904 42 H 0.085 0.915 43 H 0.065 0.935 44 H 0.154 0.846 45 H 0.153 0.847 46 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -6.574 -4.074 -15.560 17.376 hybrid contribution 0.837 1.441 0.245 1.684 sum -5.737 -2.633 -15.316 16.565 Atomic orbital electron populations 1.22035 0.91902 1.03309 1.03510 1.19904 0.97610 0.99983 0.89349 0.87069 1.20007 0.79679 0.85499 0.84403 1.90702 1.43572 1.21624 1.85957 1.48107 1.51673 1.25546 1.06521 1.22639 0.97836 0.97481 0.85103 1.21379 0.88207 0.85441 0.98240 0.85983 1.21752 0.98759 0.99517 0.94957 1.22137 0.98782 0.98327 0.98569 1.21971 0.98649 0.97784 0.97849 1.21226 0.93155 0.93458 0.87984 0.90378 1.22622 0.94832 0.85739 1.00549 1.44449 1.58633 1.26584 1.00279 1.19126 1.03842 1.30360 0.84567 0.91381 1.24945 0.94596 1.01655 0.98439 1.69948 1.03747 1.49903 1.30517 0.86360 0.77716 0.77963 0.84659 1.21117 1.21690 1.21021 1.23958 1.05427 0.97557 0.99941 1.20054 1.00814 1.01589 0.94981 1.20037 1.03025 0.93227 1.00379 1.25701 1.07220 1.01434 1.02521 1.84293 1.50008 1.09617 1.15099 0.90326 0.91091 0.91951 0.92234 0.90242 0.91144 0.94505 0.95107 0.90386 0.94209 0.92187 0.90389 0.91455 0.93479 0.84579 0.84728 0.82335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 8.69 37.16 0.32 -1.28 16 2 C -0.05 -0.60 2.15 -92.92 -0.20 -0.80 16 3 H 0.11 1.36 7.28 -51.93 -0.38 0.98 16 4 C 0.52 8.68 4.43 -10.99 -0.05 8.63 16 5 O -0.54 -10.73 14.47 5.56 0.08 -10.65 16 6 N -0.59 -10.09 1.64 -171.95 -0.28 -10.37 16 7 C 0.09 1.83 5.92 -3.24 -0.02 1.81 16 8 C 0.17 3.89 2.70 -66.60 -0.18 3.71 16 9 H 0.12 3.13 5.64 -51.93 -0.29 2.83 16 10 C -0.11 -2.40 5.59 -26.53 -0.15 -2.55 16 11 C -0.14 -2.64 5.55 -26.72 -0.15 -2.79 16 12 C -0.12 -2.19 5.58 -26.54 -0.15 -2.34 16 13 C 0.15 2.77 3.62 -66.84 -0.24 2.52 16 14 H 0.08 1.39 8.01 -51.93 -0.42 0.98 16 15 C 0.09 1.34 4.78 -3.49 -0.02 1.33 16 16 N -0.58 -13.10 2.55 -155.15 -0.40 -13.50 16 17 C -0.25 -6.32 9.73 -15.06 -0.15 -6.46 16 18 H 0.07 1.69 7.90 -52.49 -0.41 1.27 16 19 C 0.00 0.06 5.01 -17.43 -0.09 -0.03 16 20 N -0.90 -24.33 10.97 55.49 0.61 -23.73 16 21 Si 0.90 20.75 29.59 -169.99 -5.03 15.71 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 C -0.15 -2.04 4.69 -36.01 -0.17 -2.20 16 26 C -0.14 -1.78 10.01 -41.21 -0.41 -2.19 16 27 C -0.14 -1.53 10.18 -41.20 -0.42 -1.95 16 28 C -0.23 -2.64 11.23 29.04 0.33 -2.31 16 29 S 0.14 1.91 22.07 -107.50 -2.37 -0.47 16 30 H 0.08 0.77 5.49 -51.93 -0.29 0.48 16 31 H 0.07 0.64 8.13 -51.93 -0.42 0.21 16 32 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.08 1.61 7.02 -51.93 -0.36 1.25 16 35 H 0.07 1.72 8.14 -51.93 -0.42 1.30 16 36 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.08 1.43 2.27 -52.49 -0.12 1.31 16 39 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.08 0.96 4.31 -51.93 -0.22 0.73 16 42 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 44 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 45 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 46 H 0.16 1.39 8.06 -52.48 -0.42 0.97 16 LS Contribution 356.14 15.07 5.37 5.37 Total: -1.00 -29.03 356.14 -10.46 -39.49 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -6.70 Total: 5.05 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: -1.74 Total: -6.91 kcal Atomic # 7 Polarization: -47.53 SS G_CDS: -0.07 Total: -47.60 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.08 Total: -10.65 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.03 Total: 15.71 kcal Atomic # 16 Polarization: 1.91 SS G_CDS: -2.37 Total: -0.47 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.03 -10.46 -39.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039909607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.192 kcal (2) G-P(sol) polarization free energy of solvation -29.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds