Wall clock time and date at job start Tue Mar 31 2020 17:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 S 1.65598 * 120.00347 * 2 1 4 4 O 1.42098 * 106.39992 * 311.46271 * 3 2 1 5 5 O 1.42092 * 106.40316 * 178.54211 * 3 2 1 6 6 N 1.65601 * 107.21884 * 64.99964 * 3 2 1 7 7 C 1.46500 * 119.99867 * 64.99844 * 6 3 2 8 8 C 1.50701 * 109.46848 * 165.00163 * 7 6 3 9 9 O 1.21285 * 120.00205 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99823 * 180.02562 * 8 7 6 11 11 C 1.46507 * 119.99700 * 179.97438 * 10 8 7 12 12 H 1.08992 * 109.49682 * 35.06657 * 11 10 8 13 13 C 1.53043 * 109.49586 * 274.99850 * 11 10 8 14 14 C 1.53038 * 109.53997 * 301.38197 * 13 11 10 15 15 C 1.53193 * 109.31324 * 298.63988 * 14 13 11 16 16 N 1.46919 * 108.77935 * 54.63210 * 15 14 13 17 17 C 1.36936 * 120.63073 * 126.41235 * 16 15 14 18 18 H 1.08001 * 120.00345 * 208.98768 * 17 16 15 19 19 C 1.38814 * 119.99869 * 28.98949 * 17 16 15 20 20 N 1.31612 * 120.00200 * 15.04642 * 19 17 16 21 21 Si 1.86798 * 119.99944 * 195.04276 * 19 17 16 22 22 H 1.48506 * 109.47458 * 359.97438 * 21 19 17 23 23 H 1.48490 * 109.47335 * 120.00061 * 21 19 17 24 24 H 1.48504 * 109.47113 * 240.00357 * 21 19 17 25 25 C 1.46927 * 118.74038 * 306.39606 * 16 15 14 26 26 H 1.08998 * 109.70125 * 293.74980 * 25 16 15 27 27 C 1.53003 * 109.59057 * 173.39430 * 25 16 15 28 28 H 1.09000 * 109.47120 * 59.99737 * 1 2 3 29 29 H 1.08999 * 109.47486 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47249 * 299.99897 * 1 2 3 31 31 H 0.97005 * 119.99526 * 180.02562 * 2 1 3 32 32 H 0.97005 * 119.99986 * 245.00570 * 6 3 2 33 33 H 1.08998 * 109.46954 * 45.00334 * 7 6 3 34 34 H 1.08993 * 109.47558 * 285.00275 * 7 6 3 35 35 H 0.97001 * 120.00076 * 359.97438 * 10 8 7 36 36 H 1.09002 * 109.45560 * 181.36405 * 13 11 10 37 37 H 1.09000 * 109.46056 * 61.40532 * 13 11 10 38 38 H 1.09001 * 109.49814 * 58.59008 * 14 13 11 39 39 H 1.08997 * 109.49728 * 178.68629 * 14 13 11 40 40 H 1.09001 * 109.58791 * 174.42495 * 15 14 13 41 41 H 1.09006 * 109.58142 * 294.84367 * 15 14 13 42 42 H 0.96996 * 120.00390 * 179.97438 * 20 19 17 43 43 H 1.09004 * 109.46746 * 300.70907 * 27 25 16 44 44 H 1.08996 * 109.46774 * 60.70754 * 27 25 16 45 45 H 1.08993 * 109.47367 * 180.71008 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2931 1.4341 0.0000 4 8 1.7120 2.2329 -1.0215 5 8 3.6738 1.1002 0.0347 6 7 1.9593 2.1929 1.4336 7 6 2.3999 1.5974 2.6975 8 6 2.3105 2.6258 3.7954 9 8 1.9170 3.7458 3.5467 10 7 2.6678 2.3010 5.0537 11 6 2.5814 3.3010 6.1209 12 1 1.7199 3.9455 5.9466 13 6 3.8574 4.1460 6.1336 14 6 5.0707 3.2378 6.3455 15 6 4.9448 2.5317 7.6992 16 7 3.6528 1.8343 7.7505 17 6 3.5916 0.5000 8.0525 18 1 2.7902 -0.1068 7.6577 19 6 4.5597 -0.0725 8.8660 20 7 5.3546 0.6938 9.5823 21 14 4.7343 -1.9307 8.9442 22 1 3.7281 -2.5605 8.0517 23 1 6.0985 -2.3187 8.5044 24 1 4.5144 -2.3903 10.3391 25 6 2.4274 2.5957 7.4720 26 1 2.2695 3.3370 8.2553 27 6 1.2318 1.6423 7.4196 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.9500 -0.8401 -0.0004 32 1 1.4719 3.0316 1.4364 33 1 3.4314 1.2591 2.5996 34 1 1.7609 0.7488 2.9416 35 1 2.9822 1.4052 5.2527 36 1 3.8028 4.8739 6.9432 37 1 3.9565 4.6684 5.1820 38 1 5.1118 2.4940 5.5497 39 1 5.9809 3.8373 6.3311 40 1 5.7542 1.8104 7.8117 41 1 4.9948 3.2681 8.5013 42 1 6.0309 0.2937 10.1510 43 1 1.3940 0.8988 6.6392 44 1 1.1240 1.1416 8.3817 45 1 0.3259 2.2073 7.2005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507371596.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:34 Heat of formation + Delta-G solvation = -92.249405 kcal Electronic energy + Delta-G solvation = -28358.079223 eV Core-core repulsion = 24344.954773 eV Total energy + Delta-G solvation = -4013.124450 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.151 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.94173 -37.86254 -37.42140 -36.06074 -35.34563 -34.78173 -34.01719 -32.49899 -31.80528 -29.67372 -27.30080 -26.33471 -26.02783 -25.06036 -22.18105 -20.95553 -20.51209 -20.16996 -18.84676 -18.57791 -17.91167 -17.06452 -16.56012 -16.27503 -15.86760 -15.48092 -15.24318 -14.89120 -14.55556 -14.20634 -14.03636 -13.82652 -13.50115 -13.30962 -13.16845 -12.99199 -12.81416 -12.59245 -12.32252 -12.28981 -12.23244 -11.92934 -11.90603 -11.35420 -11.31114 -11.04897 -10.77320 -10.71118 -10.57719 -10.17336 -10.07560 -10.03694 -9.98935 -9.74523 -9.66555 -9.37370 -8.66868 -8.54000 -6.75849 -5.88087 -3.34013 0.36275 2.59213 2.73634 3.29065 3.34525 3.36217 3.38774 3.46303 4.27437 4.38240 4.59492 4.71688 5.03644 5.09715 5.12299 5.17388 5.23657 5.26781 5.37814 5.49927 5.53028 5.63114 5.67922 5.89380 6.03494 6.14073 6.24534 6.32782 6.46903 6.53473 6.58766 6.61715 6.71688 6.81464 6.86729 6.87452 6.99132 7.32713 7.61323 7.70695 7.83507 8.34432 8.41220 9.10703 9.73767 10.30525 11.19658 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.014338 B = 0.003337 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.345062 B = 8389.798603 C = 9208.460896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -1.132 6.132 3 S 2.798 3.202 4 O -0.977 6.977 5 O -0.977 6.977 6 N -1.113 6.113 7 C 0.098 3.902 8 C 0.508 3.492 9 O -0.548 6.548 10 N -0.695 5.695 11 C 0.134 3.866 12 H 0.077 0.923 13 C -0.122 4.122 14 C -0.141 4.141 15 C 0.170 3.830 16 N -0.586 5.586 17 C -0.258 4.258 18 H 0.072 0.928 19 C 0.006 3.994 20 N -0.899 5.899 21 Si 0.900 3.100 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.291 1.291 25 C 0.159 3.841 26 H 0.040 0.960 27 C -0.135 4.135 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.061 0.939 31 H 0.418 0.582 32 H 0.426 0.574 33 H 0.108 0.892 34 H 0.094 0.906 35 H 0.411 0.589 36 H 0.063 0.937 37 H 0.050 0.950 38 H 0.053 0.947 39 H 0.047 0.953 40 H 0.088 0.912 41 H 0.018 0.982 42 H 0.254 0.746 43 H 0.053 0.947 44 H 0.063 0.937 45 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.826 -1.175 -14.080 16.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.893 5.893 3 S 2.802 3.198 4 O -0.960 6.960 5 O -0.960 6.960 6 N -0.878 5.878 7 C -0.032 4.032 8 C 0.292 3.708 9 O -0.426 6.426 10 N -0.347 5.347 11 C 0.028 3.972 12 H 0.095 0.905 13 C -0.160 4.160 14 C -0.180 4.180 15 C 0.045 3.955 16 N -0.310 5.310 17 C -0.387 4.387 18 H 0.089 0.911 19 C -0.193 4.193 20 N -0.543 5.543 21 Si 0.730 3.270 22 H -0.203 1.203 23 H -0.216 1.216 24 H -0.218 1.218 25 C 0.051 3.949 26 H 0.057 0.943 27 C -0.193 4.193 28 H 0.084 0.916 29 H 0.099 0.901 30 H 0.080 0.920 31 H 0.251 0.749 32 H 0.264 0.736 33 H 0.126 0.874 34 H 0.112 0.888 35 H 0.248 0.752 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.106 0.894 41 H 0.036 0.964 42 H 0.064 0.936 43 H 0.072 0.928 44 H 0.082 0.918 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -8.444 -0.115 -14.795 17.036 hybrid contribution 0.137 -1.538 0.697 1.694 sum -8.307 -1.654 -14.099 16.447 Atomic orbital electron populations 1.21443 0.78531 1.04088 1.02018 1.55711 1.16345 1.25228 1.92061 1.01570 0.73064 0.72573 0.72550 1.93633 1.79159 1.68811 1.54394 1.93646 1.31633 1.83930 1.86791 1.55587 1.73919 1.37308 1.20998 1.21043 1.02560 0.95734 0.83848 1.20272 0.77918 0.88766 0.83886 1.90657 1.47727 1.21902 1.82348 1.45960 1.64908 1.16711 1.07098 1.21586 0.97659 0.89749 0.88211 0.90502 1.21777 0.95690 0.97785 1.00775 1.22148 0.95923 0.98360 1.01564 1.20824 0.89378 0.94984 0.90319 1.44186 0.99295 1.06468 1.81083 1.19184 1.11509 0.83782 1.24249 0.91088 1.25102 1.00275 0.97684 0.96222 1.70018 1.22737 1.33604 1.27898 0.86272 0.77636 0.85670 0.77399 1.20278 1.21599 1.21798 1.20719 0.88720 0.93681 0.91733 0.94259 1.21783 0.95794 0.99231 1.02485 0.91560 0.90056 0.92047 0.74908 0.73628 0.87401 0.88830 0.75240 0.91867 0.93081 0.92802 0.93391 0.89360 0.96431 0.93623 0.92795 0.91760 0.94216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.47 11.16 59.85 0.67 1.14 16 2 N -1.13 -7.78 6.24 -16.63 -0.10 -7.89 16 3 S 2.80 29.28 6.18 -107.50 -0.66 28.62 16 4 O -0.98 -13.16 17.86 -57.17 -1.02 -14.19 16 5 O -0.98 -13.35 17.61 -57.17 -1.01 -14.36 16 6 N -1.11 -11.53 5.99 -11.66 -0.07 -11.60 16 7 C 0.10 1.03 6.73 -5.19 -0.03 0.99 16 8 C 0.51 7.13 7.86 -10.98 -0.09 7.04 16 9 O -0.55 -9.22 15.39 5.55 0.09 -9.14 16 10 N -0.70 -10.24 3.47 -53.68 -0.19 -10.42 16 11 C 0.13 2.20 2.32 -67.80 -0.16 2.04 16 12 H 0.08 1.26 7.58 -51.93 -0.39 0.87 16 13 C -0.12 -2.05 5.58 -26.69 -0.15 -2.20 16 14 C -0.14 -2.55 5.93 -26.61 -0.16 -2.71 16 15 C 0.17 3.73 5.29 -3.71 -0.02 3.71 16 16 N -0.59 -12.73 2.65 -164.77 -0.44 -13.17 16 17 C -0.26 -6.13 8.61 -15.06 -0.13 -6.26 16 18 H 0.07 1.62 6.20 -52.49 -0.33 1.29 16 19 C 0.01 0.16 4.96 -17.43 -0.09 0.08 16 20 N -0.90 -24.35 11.14 55.49 0.62 -23.73 16 21 Si 0.90 20.03 29.58 -169.99 -5.03 15.00 16 22 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 23 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 24 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 25 C 0.16 2.91 3.20 -67.60 -0.22 2.70 16 26 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 27 C -0.14 -2.23 7.72 37.16 0.29 -1.94 16 28 H 0.07 0.39 8.10 -51.93 -0.42 -0.03 16 29 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.42 2.16 8.96 -34.47 -0.31 1.85 16 32 H 0.43 4.64 7.70 -34.47 -0.27 4.37 16 33 H 0.11 1.08 7.75 -51.93 -0.40 0.68 16 34 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.41 6.07 7.77 -40.82 -0.32 5.75 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.05 0.98 7.53 -51.93 -0.39 0.59 16 39 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.09 2.19 6.06 -51.93 -0.31 1.88 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.25 6.72 8.31 -40.82 -0.34 6.38 16 43 H 0.05 0.85 6.38 -51.93 -0.33 0.52 16 44 H 0.06 1.16 7.66 -51.93 -0.40 0.76 16 45 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 370.07 15.07 5.58 5.58 Total: -1.00 -32.69 370.07 -9.13 -41.82 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -6.81 Total: 8.88 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: -0.08 Total: 4.59 kcal Atomic # 7 Polarization: -66.63 SS G_CDS: -0.18 Total: -66.81 kcal Atomic # 8 Polarization: -35.74 SS G_CDS: -1.94 Total: -37.68 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.03 Total: 15.00 kcal Atomic # 16 Polarization: 29.28 SS G_CDS: -0.66 Total: 28.62 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.69 -9.13 -41.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507371596.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.429 kcal (2) G-P(sol) polarization free energy of solvation -32.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds