Wall clock time and date at job start Tue Mar 31 2020 17:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 S 1.65601 * 120.00305 * 2 1 4 4 O 1.42101 * 106.39840 * 311.45767 * 3 2 1 5 5 O 1.42091 * 106.40641 * 178.53485 * 3 2 1 6 6 N 1.65600 * 107.21788 * 64.99575 * 3 2 1 7 7 C 1.46493 * 120.00387 * 65.27597 * 6 3 2 8 8 C 1.50697 * 109.47735 * 164.72352 * 7 6 3 9 9 O 1.21284 * 119.99834 * 0.02562 * 8 7 6 10 10 N 1.34771 * 120.00354 * 180.02562 * 8 7 6 11 11 C 1.46498 * 120.00198 * 179.97438 * 10 8 7 12 12 H 1.09004 * 109.50152 * 325.06701 * 11 10 8 13 13 C 1.53046 * 109.49762 * 85.16153 * 11 10 8 14 14 C 1.53045 * 109.53384 * 58.58921 * 13 11 10 15 15 C 1.53193 * 109.31322 * 61.36668 * 14 13 11 16 16 N 1.46923 * 108.77568 * 305.36002 * 15 14 13 17 17 C 1.36930 * 120.63477 * 233.63259 * 16 15 14 18 18 H 1.07995 * 120.00458 * 150.90123 * 17 16 15 19 19 C 1.38818 * 120.00054 * 330.90135 * 17 16 15 20 20 N 1.31617 * 120.00143 * 160.73034 * 19 17 16 21 21 Si 1.86803 * 119.99528 * 340.72958 * 19 17 16 22 22 H 1.48496 * 109.47108 * 92.27054 * 21 19 17 23 23 H 1.48505 * 109.46642 * 212.26932 * 21 19 17 24 24 H 1.48500 * 109.47480 * 332.26735 * 21 19 17 25 25 C 1.46927 * 118.73448 * 53.61372 * 16 15 14 26 26 H 1.08994 * 109.58885 * 66.17842 * 25 16 15 27 27 C 1.53004 * 109.70188 * 186.53366 * 25 16 15 28 28 H 1.08995 * 109.47203 * 300.00556 * 1 2 3 29 29 H 1.08997 * 109.46432 * 60.00304 * 1 2 3 30 30 H 1.08998 * 109.47277 * 179.97438 * 1 2 3 31 31 H 0.96996 * 120.00002 * 179.97438 * 2 1 3 32 32 H 0.97005 * 119.99921 * 245.00364 * 6 3 2 33 33 H 1.09002 * 109.47406 * 284.72603 * 7 6 3 34 34 H 1.09007 * 109.46728 * 44.72663 * 7 6 3 35 35 H 0.96998 * 120.00066 * 0.02562 * 10 8 7 36 36 H 1.08996 * 109.46058 * 178.60340 * 13 11 10 37 37 H 1.08993 * 109.46133 * 298.56821 * 13 11 10 38 38 H 1.09000 * 109.49752 * 301.41247 * 14 13 11 39 39 H 1.08998 * 109.49432 * 181.32058 * 14 13 11 40 40 H 1.09009 * 109.58375 * 185.57781 * 15 14 13 41 41 H 1.09001 * 109.70453 * 65.22417 * 15 14 13 42 42 H 0.97003 * 119.99420 * 180.02562 * 20 19 17 43 43 H 1.09000 * 109.47079 * 179.36185 * 27 25 16 44 44 H 1.08997 * 109.46843 * 299.35688 * 27 25 16 45 45 H 1.09005 * 109.47273 * 59.35935 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2931 1.4341 0.0000 4 8 1.7121 2.2328 -1.0216 5 8 3.6738 1.1003 0.0349 6 7 1.9592 2.1929 1.4335 7 6 2.4050 1.6007 2.6971 8 6 2.3201 2.6317 3.7929 9 8 1.9255 3.7511 3.5430 10 7 2.6826 2.3101 5.0504 11 6 2.6006 3.3126 6.1155 12 1 2.8431 4.2949 5.7101 13 6 1.1822 3.3325 6.6902 14 6 0.8292 1.9445 7.2297 15 6 1.8016 1.5757 8.3546 16 7 3.1761 1.6951 7.8496 17 6 4.0519 0.6478 7.9559 18 1 4.8407 0.5274 7.2281 19 6 3.9259 -0.2592 8.9992 20 7 4.4896 -1.4453 8.9118 21 14 2.9563 0.2039 10.5273 22 1 1.5460 -0.2333 10.3700 23 1 3.5523 -0.4633 11.7126 24 1 3.0002 1.6765 10.7141 25 6 3.5929 2.9594 7.2279 26 1 3.5987 3.7507 7.9773 27 6 4.9947 2.8048 6.6344 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.9500 -0.8400 0.0004 32 1 1.4719 3.0317 1.4363 33 1 1.7670 0.7527 2.9460 34 1 3.4362 1.2622 2.5958 35 1 2.9985 1.4150 5.2502 36 1 1.1284 4.0609 7.4992 37 1 0.4767 3.6077 5.9064 38 1 0.9069 1.2114 6.4268 39 1 -0.1894 1.9532 7.6176 40 1 1.6177 0.5501 8.6749 41 1 1.6619 2.2524 9.1977 42 1 4.4012 -2.0792 9.6407 43 1 5.2955 3.7411 6.1644 44 1 5.6992 2.5536 7.4273 45 1 4.9880 2.0097 5.8888 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507371597.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:38 Heat of formation + Delta-G solvation = -87.101979 kcal Electronic energy + Delta-G solvation = -28406.532806 eV Core-core repulsion = 24393.631565 eV Total energy + Delta-G solvation = -4012.901240 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.151 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.05041 -38.09812 -37.41700 -36.05247 -35.33004 -34.81481 -34.11710 -32.74702 -31.85908 -30.35532 -27.41915 -26.34133 -26.18766 -24.95134 -22.65160 -21.23557 -20.46730 -20.16020 -19.03767 -18.58981 -17.91535 -17.08474 -16.59990 -16.34026 -15.92238 -15.65965 -15.39801 -15.06766 -14.72360 -14.26965 -14.09030 -13.95146 -13.63765 -13.57004 -13.16785 -13.10114 -12.85546 -12.63134 -12.33035 -12.31256 -12.22385 -12.13375 -11.91124 -11.78391 -11.64693 -11.33347 -10.91112 -10.73447 -10.61192 -10.36472 -10.04512 -10.02779 -9.99820 -9.72794 -9.60337 -9.54862 -8.77943 -8.67316 -7.06479 -6.04955 -3.44285 0.37310 2.59555 2.69362 3.24598 3.34695 3.41447 3.42582 3.44276 4.28328 4.44032 4.58788 4.71946 4.76622 5.04124 5.10662 5.11700 5.13532 5.20221 5.30173 5.37734 5.39964 5.42847 5.62445 5.63036 5.87888 5.98217 6.00673 6.18439 6.22453 6.27301 6.35062 6.43501 6.55517 6.60189 6.66228 6.72349 6.82025 6.85848 6.94251 7.77171 7.85542 8.23181 8.35453 8.82414 9.61789 9.98508 11.10025 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.017450 B = 0.003165 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.205214 B = 8843.960003 C = 9204.424818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -1.132 6.132 3 S 2.798 3.202 4 O -0.977 6.977 5 O -0.977 6.977 6 N -1.114 6.114 7 C 0.098 3.902 8 C 0.510 3.490 9 O -0.548 6.548 10 N -0.697 5.697 11 C 0.133 3.867 12 H 0.082 0.918 13 C -0.122 4.122 14 C -0.132 4.132 15 C 0.124 3.876 16 N -0.602 5.602 17 C -0.266 4.266 18 H 0.093 0.907 19 C 0.029 3.971 20 N -0.906 5.906 21 Si 0.883 3.117 22 H -0.290 1.290 23 H -0.305 1.305 24 H -0.271 1.271 25 C 0.163 3.837 26 H 0.045 0.955 27 C -0.137 4.137 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.418 0.582 32 H 0.426 0.574 33 H 0.095 0.905 34 H 0.109 0.891 35 H 0.414 0.586 36 H 0.064 0.936 37 H 0.056 0.944 38 H 0.062 0.938 39 H 0.052 0.948 40 H 0.073 0.927 41 H 0.025 0.975 42 H 0.263 0.737 43 H 0.042 0.958 44 H 0.067 0.933 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.389 3.457 -12.921 15.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.893 5.893 3 S 2.803 3.197 4 O -0.960 6.960 5 O -0.960 6.960 6 N -0.878 5.878 7 C -0.032 4.032 8 C 0.294 3.706 9 O -0.426 6.426 10 N -0.349 5.349 11 C 0.027 3.973 12 H 0.100 0.900 13 C -0.161 4.161 14 C -0.171 4.171 15 C -0.001 4.001 16 N -0.327 5.327 17 C -0.394 4.394 18 H 0.111 0.889 19 C -0.171 4.171 20 N -0.549 5.549 21 Si 0.714 3.286 22 H -0.217 1.217 23 H -0.233 1.233 24 H -0.196 1.196 25 C 0.056 3.944 26 H 0.062 0.938 27 C -0.194 4.194 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.100 0.900 31 H 0.251 0.749 32 H 0.263 0.737 33 H 0.113 0.887 34 H 0.127 0.873 35 H 0.251 0.749 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.091 0.909 41 H 0.043 0.957 42 H 0.073 0.927 43 H 0.061 0.939 44 H 0.086 0.914 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.055 4.412 -13.689 16.484 hybrid contribution -0.774 -0.545 1.574 1.837 sum -8.829 3.867 -12.115 15.481 Atomic orbital electron populations 1.21442 0.78536 1.04126 1.01974 1.55699 1.16344 1.25235 1.92033 1.01563 0.73062 0.72574 0.72536 1.93633 1.79177 1.68838 1.54376 1.93646 1.31624 1.83926 1.86781 1.55593 1.73800 1.37401 1.21052 1.21044 1.02658 0.95724 0.83769 1.20287 0.77779 0.88784 0.83795 1.90656 1.47426 1.21993 1.82551 1.45959 1.65042 1.16871 1.07047 1.21549 0.96306 0.91592 0.87868 0.90011 1.21786 0.96514 0.97846 0.99928 1.21955 0.98529 0.96689 0.99946 1.21365 0.84608 1.00127 0.93992 1.44491 1.07440 1.10815 1.69988 1.18903 1.11340 1.00878 1.08284 0.88930 1.25314 0.97945 0.96162 0.97664 1.69804 1.47050 1.05189 1.32819 0.86972 0.78691 0.78693 0.84289 1.21734 1.23322 1.19631 1.20749 0.92318 0.89413 0.91942 0.93759 1.21800 0.96330 1.00118 1.01199 0.92068 0.91580 0.90022 0.74856 0.73669 0.88700 0.87279 0.74925 0.91696 0.92478 0.91881 0.92929 0.90916 0.95728 0.92718 0.93890 0.91434 0.92281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.49 11.16 59.85 0.67 1.16 16 2 N -1.13 -8.04 6.24 -16.64 -0.10 -8.14 16 3 S 2.80 29.31 6.19 -107.50 -0.67 28.64 16 4 O -0.98 -13.14 17.86 -57.17 -1.02 -14.16 16 5 O -0.98 -13.31 17.59 -57.17 -1.01 -14.32 16 6 N -1.11 -11.42 5.99 -11.66 -0.07 -11.49 16 7 C 0.10 1.02 6.73 -5.20 -0.03 0.99 16 8 C 0.51 6.94 7.87 -10.99 -0.09 6.85 16 9 O -0.55 -8.90 15.39 5.55 0.09 -8.81 16 10 N -0.70 -9.90 3.47 -53.69 -0.19 -10.08 16 11 C 0.13 2.03 2.32 -67.81 -0.16 1.88 16 12 H 0.08 1.26 7.58 -51.93 -0.39 0.87 16 13 C -0.12 -1.81 5.58 -26.68 -0.15 -1.96 16 14 C -0.13 -2.10 5.93 -26.61 -0.16 -2.26 16 15 C 0.12 2.43 4.20 -3.71 -0.02 2.41 16 16 N -0.60 -12.33 2.40 -164.77 -0.40 -12.73 16 17 C -0.27 -6.46 9.06 -15.06 -0.14 -6.60 16 18 H 0.09 2.36 6.40 -52.49 -0.34 2.03 16 19 C 0.03 0.76 5.24 -17.43 -0.09 0.67 16 20 N -0.91 -25.74 13.97 55.49 0.78 -24.96 16 21 Si 0.88 21.02 24.34 -169.99 -4.14 16.88 16 22 H -0.29 -6.69 6.62 56.52 0.37 -6.32 16 23 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 24 H -0.27 -6.39 6.63 56.52 0.37 -6.02 16 25 C 0.16 2.81 3.19 -67.60 -0.22 2.59 16 26 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 27 C -0.14 -2.27 7.73 37.16 0.29 -1.98 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.40 8.10 -51.93 -0.42 -0.02 16 30 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.42 2.29 8.96 -34.47 -0.31 1.98 16 32 H 0.43 4.56 7.70 -34.47 -0.27 4.29 16 33 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.11 1.08 7.74 -51.93 -0.40 0.68 16 35 H 0.41 6.06 7.78 -40.82 -0.32 5.74 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.06 1.01 7.53 -51.93 -0.39 0.62 16 39 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.07 1.57 4.62 -51.92 -0.24 1.34 16 41 H 0.02 0.49 7.03 -51.93 -0.36 0.13 16 42 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 43 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.07 1.23 7.67 -51.93 -0.40 0.83 16 45 H 0.06 0.99 6.39 -51.93 -0.33 0.66 16 LS Contribution 363.75 15.07 5.48 5.48 Total: -1.00 -33.45 363.75 -8.07 -41.53 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -6.74 Total: 8.41 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: -0.09 Total: 3.75 kcal Atomic # 7 Polarization: -67.42 SS G_CDS: 0.02 Total: -67.40 kcal Atomic # 8 Polarization: -35.35 SS G_CDS: -1.94 Total: -37.29 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.14 Total: 16.88 kcal Atomic # 16 Polarization: 29.31 SS G_CDS: -0.67 Total: 28.64 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.45 -8.07 -41.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507371597.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.575 kcal (2) G-P(sol) polarization free energy of solvation -33.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds