Wall clock time and date at job start Tue Mar 31 2020 17:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 S 1.65598 * 119.99930 * 2 1 4 4 O 1.42106 * 106.40406 * 178.54090 * 3 2 1 5 5 O 1.42098 * 106.40579 * 311.46420 * 3 2 1 6 6 N 1.65603 * 107.21885 * 65.00094 * 3 2 1 7 7 C 1.46507 * 119.99586 * 64.99939 * 6 3 2 8 8 C 1.50710 * 109.46830 * 165.00346 * 7 6 3 9 9 O 1.21279 * 119.99559 * 359.97438 * 8 7 6 10 10 N 1.34768 * 119.99953 * 179.97438 * 8 7 6 11 11 C 1.46492 * 120.00058 * 179.97438 * 10 8 7 12 12 H 1.09000 * 109.50037 * 34.93816 * 11 10 8 13 13 C 1.53039 * 109.49975 * 274.83542 * 11 10 8 14 14 C 1.53037 * 109.54120 * 178.68059 * 13 11 10 15 15 C 1.53197 * 109.31079 * 61.36648 * 14 13 11 16 16 N 1.46917 * 108.77701 * 305.36580 * 15 14 13 17 17 C 1.36940 * 120.63299 * 233.62919 * 16 15 14 18 18 H 1.07998 * 119.99800 * 150.14066 * 17 16 15 19 19 C 1.38807 * 119.99840 * 330.13984 * 17 16 15 20 20 N 1.31627 * 120.00292 * 344.50876 * 19 17 16 21 21 Si 1.86804 * 120.00024 * 164.50545 * 19 17 16 22 22 H 1.48494 * 109.46640 * 60.00298 * 21 19 17 23 23 H 1.48499 * 109.46870 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47252 * 300.00117 * 21 19 17 25 25 C 1.46931 * 118.74023 * 53.60669 * 16 15 14 26 26 H 1.09000 * 109.58429 * 66.17694 * 25 16 15 27 27 C 1.53000 * 109.58840 * 186.60512 * 25 16 15 28 28 H 1.08995 * 109.47286 * 60.00251 * 1 2 3 29 29 H 1.08998 * 109.47001 * 299.99645 * 1 2 3 30 30 H 1.09007 * 109.46807 * 179.97438 * 1 2 3 31 31 H 0.97000 * 120.00507 * 180.02562 * 2 1 3 32 32 H 0.96993 * 120.00163 * 245.00215 * 6 3 2 33 33 H 1.09003 * 109.46977 * 284.99726 * 7 6 3 34 34 H 1.08991 * 109.47196 * 45.00579 * 7 6 3 35 35 H 0.97005 * 120.00070 * 359.97438 * 10 8 7 36 36 H 1.08994 * 109.46332 * 298.70375 * 13 11 10 37 37 H 1.09005 * 109.45627 * 58.66290 * 13 11 10 38 38 H 1.09001 * 109.49897 * 301.41574 * 14 13 11 39 39 H 1.09003 * 109.49942 * 181.31970 * 14 13 11 40 40 H 1.09002 * 109.58797 * 185.57555 * 15 14 13 41 41 H 1.09005 * 109.69832 * 65.22604 * 15 14 13 42 42 H 0.96994 * 120.00421 * 179.97438 * 20 19 17 43 43 H 1.09003 * 109.46620 * 179.29211 * 27 25 16 44 44 H 1.09000 * 109.46948 * 299.28638 * 27 25 16 45 45 H 1.08991 * 109.46958 * 59.28887 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 3.6738 1.1003 0.0347 5 8 1.7120 2.2330 -1.0215 6 7 1.9592 2.1929 1.4336 7 6 2.3999 1.5974 2.6975 8 6 2.3104 2.6258 3.7956 9 8 1.9177 3.7459 3.5466 10 7 2.6668 2.3007 5.0540 11 6 2.5804 3.3005 6.1212 12 1 1.7206 3.9470 5.9453 13 6 3.8584 4.1422 6.1374 14 6 3.7554 5.2083 7.2305 15 6 3.6098 4.5240 8.5934 16 7 2.4671 3.6021 8.5400 17 6 1.4634 3.6805 9.4683 18 1 0.4574 3.3921 9.2014 19 6 1.7390 4.1307 10.7521 20 7 2.9839 4.1915 11.1752 21 14 0.3430 4.6502 11.8794 22 1 -0.5754 3.5027 12.0910 23 1 0.8981 5.0868 13.1857 24 1 -0.4033 5.7736 11.2578 25 6 2.4215 2.5946 7.4715 26 1 3.2333 1.8802 7.6080 27 6 1.0782 1.8633 7.5131 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 1.9501 -0.8400 -0.0004 32 1 1.4718 3.0315 1.4365 33 1 1.7609 0.7487 2.9416 34 1 3.4314 1.2592 2.5996 35 1 2.9806 1.4047 5.2531 36 1 4.7148 3.4983 6.3377 37 1 3.9868 4.6261 5.1691 38 1 2.8849 5.8373 7.0444 39 1 4.6561 5.8222 7.2260 40 1 3.4370 5.2760 9.3633 41 1 4.5182 3.9673 8.8239 42 1 3.1765 4.5064 12.0721 43 1 1.0416 1.1252 6.7118 44 1 0.9672 1.3618 8.4744 45 1 0.2692 2.5819 7.3825 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507371598.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:43 Heat of formation + Delta-G solvation = -93.353334 kcal Electronic energy + Delta-G solvation = -27712.828930 eV Core-core repulsion = 23699.656611 eV Total energy + Delta-G solvation = -4013.172320 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.151 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.98388 -37.85958 -37.52652 -36.16496 -35.45453 -34.94951 -34.36750 -32.63901 -31.75417 -29.57678 -27.40768 -26.42322 -25.95560 -24.99982 -22.25884 -20.76652 -20.47838 -20.25272 -19.50351 -18.64843 -17.98213 -17.19371 -16.60077 -16.26441 -16.04775 -15.63450 -15.30672 -14.96678 -14.68023 -14.22490 -13.93592 -13.81743 -13.64228 -13.43524 -13.28252 -13.16393 -12.74198 -12.60448 -12.42399 -12.37551 -12.33383 -12.02740 -11.76264 -11.60001 -11.18002 -10.96001 -10.80012 -10.64174 -10.36270 -10.23278 -10.13677 -10.12170 -10.09715 -9.96177 -9.68414 -9.42900 -8.79312 -8.49897 -6.71943 -5.84191 -3.29378 0.24938 2.47429 2.58152 3.21186 3.25697 3.34902 3.41216 3.42812 4.16067 4.39905 4.47410 4.59852 4.85007 4.93765 5.00098 5.04912 5.23887 5.30573 5.33107 5.44970 5.49415 5.55552 5.73025 5.90778 6.01252 6.14678 6.25769 6.32598 6.42912 6.46737 6.54472 6.63857 6.70044 6.70529 6.79045 6.91875 6.99658 7.35027 7.57623 7.62394 7.76698 8.21727 8.40273 9.15187 9.77758 10.34158 11.24484 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.025987 B = 0.002451 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.216624 B =11419.802210 C =11940.092661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -1.132 6.132 3 S 2.798 3.202 4 O -0.978 6.978 5 O -0.974 6.974 6 N -1.114 6.114 7 C 0.099 3.901 8 C 0.509 3.491 9 O -0.534 6.534 10 N -0.714 5.714 11 C 0.130 3.870 12 H 0.087 0.913 13 C -0.118 4.118 14 C -0.140 4.140 15 C 0.170 3.830 16 N -0.582 5.582 17 C -0.255 4.255 18 H 0.070 0.930 19 C 0.006 3.994 20 N -0.901 5.901 21 Si 0.902 3.098 22 H -0.282 1.282 23 H -0.291 1.291 24 H -0.283 1.283 25 C 0.167 3.833 26 H 0.029 0.971 27 C -0.136 4.136 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.081 0.919 31 H 0.417 0.583 32 H 0.427 0.573 33 H 0.094 0.906 34 H 0.108 0.892 35 H 0.399 0.601 36 H 0.055 0.945 37 H 0.050 0.950 38 H 0.056 0.944 39 H 0.052 0.948 40 H 0.087 0.913 41 H 0.020 0.980 42 H 0.255 0.745 43 H 0.038 0.962 44 H 0.064 0.936 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.294 -10.753 -18.548 21.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.893 5.893 3 S 2.802 3.198 4 O -0.961 6.961 5 O -0.957 6.957 6 N -0.879 5.879 7 C -0.032 4.032 8 C 0.293 3.707 9 O -0.411 6.411 10 N -0.364 5.364 11 C 0.024 3.976 12 H 0.105 0.895 13 C -0.156 4.156 14 C -0.180 4.180 15 C 0.044 3.956 16 N -0.305 5.305 17 C -0.385 4.385 18 H 0.087 0.913 19 C -0.193 4.193 20 N -0.545 5.545 21 Si 0.732 3.268 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.210 1.210 25 C 0.059 3.941 26 H 0.046 0.954 27 C -0.194 4.194 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.100 0.900 31 H 0.250 0.750 32 H 0.265 0.735 33 H 0.112 0.888 34 H 0.126 0.874 35 H 0.232 0.768 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.105 0.895 41 H 0.038 0.962 42 H 0.065 0.935 43 H 0.057 0.943 44 H 0.083 0.917 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.995 -9.553 -19.211 21.547 hybrid contribution -0.702 -0.351 1.121 1.369 sum -2.697 -9.905 -18.089 20.799 Atomic orbital electron populations 1.21460 0.78415 1.04138 1.02151 1.55708 1.16407 1.25159 1.92070 1.01595 0.73057 0.72585 0.72564 1.93641 1.31661 1.83990 1.86823 1.93643 1.79082 1.68740 1.54283 1.55615 1.73944 1.37429 1.20925 1.21057 1.02421 0.95711 0.83974 1.20286 0.77836 0.88912 0.83712 1.90704 1.46463 1.21822 1.82098 1.46089 1.66293 1.16058 1.07988 1.21863 0.98864 0.89979 0.86877 0.89464 1.21767 0.97121 0.97945 0.98797 1.22181 1.00446 0.97480 0.97881 1.20830 0.89036 0.93020 0.92707 1.44019 1.24066 1.33352 1.29042 1.19102 0.88572 1.41280 0.89520 0.91281 1.25090 0.96062 1.01661 0.96485 1.70014 1.17327 1.49501 1.17677 0.86379 0.81686 0.78825 0.79907 1.20871 1.21636 1.20951 1.20568 0.95943 0.90536 0.87007 0.95397 1.21816 0.97567 0.99194 1.00793 0.91475 0.91978 0.90010 0.74966 0.73469 0.88783 0.87450 0.76754 0.92643 0.93146 0.92514 0.92947 0.89495 0.96205 0.93534 0.94341 0.91722 0.92672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.38 11.16 59.85 0.67 1.04 16 2 N -1.13 -6.26 6.24 -16.63 -0.10 -6.36 16 3 S 2.80 25.87 6.18 -107.50 -0.66 25.21 16 4 O -0.98 -11.84 17.61 -57.17 -1.01 -12.84 16 5 O -0.97 -12.33 17.86 -57.17 -1.02 -13.35 16 6 N -1.11 -10.19 5.99 -11.65 -0.07 -10.26 16 7 C 0.10 0.83 6.73 -5.18 -0.03 0.79 16 8 C 0.51 6.42 7.87 -10.98 -0.09 6.34 16 9 O -0.53 -8.89 15.39 5.56 0.09 -8.80 16 10 N -0.71 -8.89 4.57 -53.69 -0.25 -9.14 16 11 C 0.13 2.17 2.00 -67.81 -0.14 2.03 16 12 H 0.09 1.70 7.58 -51.93 -0.39 1.31 16 13 C -0.12 -2.02 5.46 -26.69 -0.15 -2.16 16 14 C -0.14 -2.68 6.08 -26.61 -0.16 -2.84 16 15 C 0.17 3.89 5.28 -3.71 -0.02 3.87 16 16 N -0.58 -13.63 2.99 -164.77 -0.49 -14.12 16 17 C -0.26 -6.58 8.58 -15.06 -0.13 -6.71 16 18 H 0.07 1.74 6.23 -52.49 -0.33 1.41 16 19 C 0.01 0.16 4.94 -17.43 -0.09 0.08 16 20 N -0.90 -25.23 11.23 55.49 0.62 -24.61 16 21 Si 0.90 21.05 29.58 -169.99 -5.03 16.03 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 C 0.17 3.14 3.03 -67.59 -0.21 2.94 16 26 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 27 C -0.14 -2.33 7.84 37.16 0.29 -2.04 16 28 H 0.07 0.34 8.10 -51.93 -0.42 -0.08 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.08 0.19 8.14 -51.92 -0.42 -0.23 16 31 H 0.42 1.49 8.96 -34.46 -0.31 1.19 16 32 H 0.43 4.33 7.70 -34.47 -0.27 4.06 16 33 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.11 0.77 7.75 -51.93 -0.40 0.36 16 35 H 0.40 3.74 8.61 -40.82 -0.35 3.39 16 36 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.09 2.25 6.15 -51.93 -0.32 1.93 16 41 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 43 H 0.04 0.51 7.78 -51.93 -0.40 0.11 16 44 H 0.06 1.20 7.67 -51.93 -0.40 0.80 16 45 H 0.05 1.00 7.40 -51.93 -0.38 0.62 16 LS Contribution 373.45 15.07 5.63 5.63 Total: -1.00 -35.15 373.45 -9.25 -44.40 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -6.91 Total: 4.89 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -0.04 Total: 3.34 kcal Atomic # 7 Polarization: -64.20 SS G_CDS: -0.29 Total: -64.49 kcal Atomic # 8 Polarization: -33.05 SS G_CDS: -1.94 Total: -35.00 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.03 Total: 16.03 kcal Atomic # 16 Polarization: 25.87 SS G_CDS: -0.66 Total: 25.21 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.15 -9.25 -44.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507371598.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.948 kcal (2) G-P(sol) polarization free energy of solvation -35.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds