Wall clock time and date at job start Tue Mar 31 2020 17:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 S 1.65594 * 120.00673 * 2 1 4 4 O 1.42107 * 106.39885 * 311.45886 * 3 2 1 5 5 O 1.42098 * 106.40751 * 178.54078 * 3 2 1 6 6 N 1.65599 * 107.21868 * 64.99545 * 3 2 1 7 7 C 1.46494 * 119.99886 * 65.00557 * 6 3 2 8 8 C 1.50704 * 109.47341 * 165.00115 * 7 6 3 9 9 O 1.21282 * 119.99606 * 359.97438 * 8 7 6 10 10 N 1.34779 * 120.00376 * 179.97438 * 8 7 6 11 11 C 1.46497 * 120.00000 * 179.97438 * 10 8 7 12 12 H 1.08997 * 109.52438 * 324.92363 * 11 10 8 13 13 C 1.53043 * 109.49594 * 85.00351 * 11 10 8 14 14 C 1.53038 * 109.52489 * 181.31045 * 13 11 10 15 15 C 1.53193 * 109.31111 * 298.63687 * 14 13 11 16 16 N 1.46926 * 108.77371 * 54.63976 * 15 14 13 17 17 C 1.36935 * 120.62940 * 126.41276 * 16 15 14 18 18 H 1.08007 * 120.00042 * 209.50576 * 17 16 15 19 19 C 1.38807 * 120.00149 * 29.51223 * 17 16 15 20 20 N 1.31616 * 120.00413 * 15.61498 * 19 17 16 21 21 Si 1.86807 * 119.99951 * 195.61833 * 19 17 16 22 22 H 1.48499 * 109.47121 * 94.71863 * 21 19 17 23 23 H 1.48497 * 109.46941 * 214.71938 * 21 19 17 24 24 H 1.48501 * 109.47134 * 334.71705 * 21 19 17 25 25 C 1.46924 * 118.73856 * 306.38819 * 16 15 14 26 26 H 1.09002 * 109.58763 * 293.82432 * 25 16 15 27 27 C 1.52998 * 109.59035 * 173.54032 * 25 16 15 28 28 H 1.08995 * 109.47423 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46940 * 300.00400 * 1 2 3 30 30 H 1.08997 * 109.46710 * 59.99939 * 1 2 3 31 31 H 0.97008 * 119.99423 * 179.97438 * 2 1 3 32 32 H 0.97005 * 119.99946 * 245.00625 * 6 3 2 33 33 H 1.09000 * 109.47492 * 45.00181 * 7 6 3 34 34 H 1.09003 * 109.47353 * 284.99817 * 7 6 3 35 35 H 0.97000 * 119.99805 * 0.02562 * 10 8 7 36 36 H 1.09002 * 109.46106 * 61.29585 * 13 11 10 37 37 H 1.08998 * 109.45806 * 301.31792 * 13 11 10 38 38 H 1.08996 * 109.50437 * 58.59024 * 14 13 11 39 39 H 1.09005 * 109.49876 * 178.69206 * 14 13 11 40 40 H 1.08997 * 109.58864 * 174.42553 * 15 14 13 41 41 H 1.09002 * 109.59043 * 294.85264 * 15 14 13 42 42 H 0.97001 * 120.00448 * 179.97438 * 20 19 17 43 43 H 1.09000 * 109.47223 * 59.99519 * 27 25 16 44 44 H 1.08990 * 109.47451 * 180.02562 * 27 25 16 45 45 H 1.09005 * 109.46948 * 300.00296 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2931 1.4340 0.0000 4 8 1.7122 2.2328 -1.0217 5 8 3.6739 1.1001 0.0347 6 7 1.9593 2.1929 1.4335 7 6 2.3999 1.5975 2.6974 8 6 2.3105 2.6259 3.7954 9 8 1.9178 3.7461 3.5464 10 7 2.6669 2.3009 5.0539 11 6 2.5804 3.3009 6.1210 12 1 2.8278 4.2838 5.7201 13 6 1.1584 3.3230 6.6863 14 6 1.0588 4.3901 7.7788 15 6 2.0258 4.0434 8.9153 16 7 3.3739 3.8774 8.3550 17 6 4.4325 4.5811 8.8642 18 1 5.2630 4.8446 8.2259 19 6 4.4384 4.9557 10.2007 20 7 3.6038 4.3898 11.0465 21 14 5.6311 6.2631 10.7991 22 1 4.9587 7.5871 10.7916 23 1 6.0695 5.9383 12.1802 24 1 6.8131 6.3030 9.9011 25 6 3.5646 2.9418 7.2384 26 1 3.3757 1.9236 7.5785 27 6 4.9989 3.0506 6.7171 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 1.9499 -0.8402 0.0004 32 1 1.4720 3.0316 1.4363 33 1 3.4315 1.2592 2.5997 34 1 1.7609 0.7489 2.9416 35 1 2.9813 1.4051 5.2529 36 1 0.9205 2.3469 7.1093 37 1 0.4537 3.5542 5.8876 38 1 1.3206 5.3627 7.3624 39 1 0.0400 4.4214 8.1650 40 1 2.0317 4.8496 9.6488 41 1 1.7115 3.1150 9.3922 42 1 3.6082 4.6513 11.9806 43 1 5.6962 2.8056 7.5183 44 1 5.1381 2.3562 5.8887 45 1 5.1842 4.0681 6.3729 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507371599.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:47 Heat of formation + Delta-G solvation = -93.285664 kcal Electronic energy + Delta-G solvation = -27709.911158 eV Core-core repulsion = 23696.741773 eV Total energy + Delta-G solvation = -4013.169385 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.151 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.98536 -37.86366 -37.52321 -36.16054 -35.46084 -34.95164 -34.36914 -32.64612 -31.74894 -29.57521 -27.40430 -26.43217 -25.95742 -24.99980 -22.26263 -20.76669 -20.47552 -20.25657 -19.51327 -18.64280 -17.98284 -17.19527 -16.57752 -16.28820 -16.04892 -15.66401 -15.30291 -14.94199 -14.64970 -14.26071 -13.88775 -13.82395 -13.76666 -13.33538 -13.28227 -13.18048 -12.76375 -12.60189 -12.41896 -12.37394 -12.32716 -12.03130 -11.76765 -11.59198 -11.16702 -10.95773 -10.80755 -10.61554 -10.36796 -10.23325 -10.14253 -10.12086 -10.06673 -9.96436 -9.69178 -9.42701 -8.79703 -8.50037 -6.72405 -5.83842 -3.28635 0.24954 2.47468 2.57943 3.21201 3.25815 3.35522 3.43288 3.44099 4.16186 4.40006 4.47874 4.58907 4.84206 4.94379 4.98767 5.04135 5.23723 5.29076 5.33524 5.45156 5.48200 5.55363 5.71428 5.89679 6.00970 6.15102 6.26976 6.35276 6.42439 6.45749 6.53232 6.63149 6.68822 6.70332 6.77806 6.93868 7.00847 7.34450 7.57414 7.61882 7.78197 8.21562 8.40461 9.15710 9.78168 10.34139 11.24850 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.026816 B = 0.002438 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.892564 B =11481.208771 C =11938.173815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -1.132 6.132 3 S 2.798 3.202 4 O -0.974 6.974 5 O -0.977 6.977 6 N -1.114 6.114 7 C 0.099 3.901 8 C 0.509 3.491 9 O -0.534 6.534 10 N -0.714 5.714 11 C 0.129 3.871 12 H 0.087 0.913 13 C -0.116 4.116 14 C -0.141 4.141 15 C 0.169 3.831 16 N -0.582 5.582 17 C -0.253 4.253 18 H 0.071 0.929 19 C 0.005 3.995 20 N -0.902 5.902 21 Si 0.902 3.098 22 H -0.287 1.287 23 H -0.291 1.291 24 H -0.278 1.278 25 C 0.168 3.832 26 H 0.028 0.972 27 C -0.138 4.138 28 H 0.081 0.919 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.417 0.583 32 H 0.427 0.573 33 H 0.108 0.892 34 H 0.094 0.906 35 H 0.399 0.601 36 H 0.054 0.946 37 H 0.049 0.951 38 H 0.056 0.944 39 H 0.052 0.948 40 H 0.088 0.912 41 H 0.019 0.981 42 H 0.254 0.746 43 H 0.064 0.936 44 H 0.039 0.961 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.012 -12.230 -17.639 22.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.894 5.894 3 S 2.802 3.198 4 O -0.957 6.957 5 O -0.960 6.960 6 N -0.879 5.879 7 C -0.032 4.032 8 C 0.293 3.707 9 O -0.411 6.411 10 N -0.364 5.364 11 C 0.024 3.976 12 H 0.105 0.895 13 C -0.155 4.155 14 C -0.180 4.180 15 C 0.044 3.956 16 N -0.305 5.305 17 C -0.383 4.383 18 H 0.089 0.911 19 C -0.194 4.194 20 N -0.546 5.546 21 Si 0.732 3.268 22 H -0.214 1.214 23 H -0.218 1.218 24 H -0.203 1.203 25 C 0.060 3.940 26 H 0.046 0.954 27 C -0.195 4.195 28 H 0.100 0.900 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.250 0.750 32 H 0.265 0.735 33 H 0.126 0.874 34 H 0.112 0.888 35 H 0.232 0.768 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.106 0.894 41 H 0.037 0.963 42 H 0.064 0.936 43 H 0.084 0.916 44 H 0.058 0.942 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.746 -11.043 -18.305 22.417 hybrid contribution 0.342 -0.023 0.914 0.976 sum -6.404 -11.066 -17.391 21.585 Atomic orbital electron populations 1.21454 0.78457 1.04108 1.02121 1.55718 1.16385 1.25182 1.92074 1.01606 0.73065 0.72583 0.72563 1.93644 1.79095 1.68742 1.54265 1.93643 1.31619 1.83966 1.86799 1.55615 1.73946 1.37416 1.20932 1.21054 1.02466 0.95664 0.83979 1.20290 0.77899 0.88912 0.83644 1.90705 1.46322 1.21766 1.82290 1.46089 1.66232 1.16144 1.07965 1.21859 0.96723 0.92116 0.86913 0.89452 1.21756 0.95951 0.99628 0.98130 1.22187 0.99808 0.98178 0.97865 1.20837 0.82157 1.00178 0.92427 1.44041 1.04710 1.46140 1.35620 1.19183 0.99731 1.27627 0.91742 0.91137 1.25081 0.98676 0.99911 0.95710 1.70024 1.39702 1.42039 1.02830 0.86277 0.80734 0.81835 0.77937 1.21436 1.21786 1.20329 1.20558 0.92385 0.93270 0.87825 0.95427 1.21828 0.97061 1.00965 0.99654 0.90026 0.92032 0.91476 0.74961 0.73482 0.87391 0.88843 0.76753 0.92710 0.93214 0.92497 0.92975 0.89413 0.96254 0.93624 0.91650 0.94234 0.92673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.36 11.16 59.85 0.67 1.03 16 2 N -1.13 -6.18 6.24 -16.63 -0.10 -6.28 16 3 S 2.80 25.90 6.18 -107.50 -0.66 25.23 16 4 O -0.97 -12.34 17.86 -57.17 -1.02 -13.36 16 5 O -0.98 -11.92 17.61 -57.17 -1.01 -12.92 16 6 N -1.11 -10.17 5.99 -11.66 -0.07 -10.24 16 7 C 0.10 0.82 6.73 -5.20 -0.03 0.79 16 8 C 0.51 6.42 7.86 -10.98 -0.09 6.33 16 9 O -0.53 -8.88 15.39 5.56 0.09 -8.79 16 10 N -0.71 -8.88 4.59 -53.70 -0.25 -9.13 16 11 C 0.13 2.16 2.00 -67.83 -0.14 2.03 16 12 H 0.09 1.72 7.58 -51.93 -0.39 1.33 16 13 C -0.12 -1.93 5.46 -26.69 -0.15 -2.08 16 14 C -0.14 -2.65 6.08 -26.61 -0.16 -2.81 16 15 C 0.17 3.87 5.28 -3.71 -0.02 3.85 16 16 N -0.58 -13.68 2.99 -164.79 -0.49 -14.17 16 17 C -0.25 -6.58 8.58 -15.06 -0.13 -6.71 16 18 H 0.07 1.80 6.23 -52.48 -0.33 1.48 16 19 C 0.01 0.14 4.94 -17.43 -0.09 0.05 16 20 N -0.90 -25.28 11.21 55.49 0.62 -24.66 16 21 Si 0.90 21.24 29.58 -169.99 -5.03 16.22 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 C 0.17 3.17 3.02 -67.62 -0.20 2.97 16 26 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 27 C -0.14 -2.43 7.84 37.16 0.29 -2.14 16 28 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.07 0.33 8.10 -51.93 -0.42 -0.09 16 31 H 0.42 1.47 8.96 -34.47 -0.31 1.16 16 32 H 0.43 4.31 7.70 -34.47 -0.27 4.04 16 33 H 0.11 0.78 7.75 -51.93 -0.40 0.38 16 34 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.40 3.73 8.60 -40.82 -0.35 3.38 16 36 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.09 2.26 6.12 -51.93 -0.32 1.95 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.25 6.91 8.31 -40.82 -0.34 6.58 16 43 H 0.06 1.25 7.63 -51.93 -0.40 0.85 16 44 H 0.04 0.56 7.81 -51.93 -0.41 0.15 16 45 H 0.05 1.04 7.44 -51.93 -0.39 0.65 16 LS Contribution 373.44 15.07 5.63 5.63 Total: -1.00 -35.29 373.44 -9.26 -44.55 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -6.91 Total: 4.62 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: -0.04 Total: 3.31 kcal Atomic # 7 Polarization: -64.19 SS G_CDS: -0.29 Total: -64.48 kcal Atomic # 8 Polarization: -33.13 SS G_CDS: -1.94 Total: -35.07 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.22 kcal Atomic # 16 Polarization: 25.90 SS G_CDS: -0.66 Total: 25.23 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.29 -9.26 -44.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507371599.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.738 kcal (2) G-P(sol) polarization free energy of solvation -35.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds